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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE E.COLI RIHA PYRIMIDINE NUCLEOSIDASE A IMINORIBITOL-BASED INHIBITOR
Keywords OPEN (ALPHA, BETA) STRUCTURE, GLYCOSIDASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3G5I     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 305 2322 0
2  Protein    B 295 2246 0
3  Protein    C 293 2230 0
4  Protein    D 304 2321 0
5  Ligand    A 3 0 21
6  Ligand    B 2 0 17
7  Ligand    C 2 0 16
8  Ligand    D 2 0 17
9 Water     510 0 510
total       1716 9119 581
Proteins
Unit 1 ALA2 LEU3 PRO4 ILE5 LEU6 LEU7 ASP8 CYS9 ASP10 PRO11 GLY12 HIS13 ASP14 ASP15 ALA16 ILE17 ALA18 ILE19 VAL20 LEU21 ALA22 LEU23 ALA24 SER25 PRO26 GLU27 LEU28 ASP29 VAL30 LYS31 ALA32 ILE33 THR34 SER35 SER36 ALA37 GLY38 ASN39 GLN40 THR41 PRO42 GLU43 LYS44 THR45 LEU46 ARG47 ASN48 VAL49 LEU50 ARG51 MET52 LEU53 THR54 LEU55 LEU56 ASN57 ARG58 THR59 ASP60 ILE61 PRO62 VAL63 ALA64 GLY65 GLY66 ALA67 VAL68 LYS69 PRO70 LEU71 MET72 ARG73 GLU74 LEU75 ILE76 ILE77 ALA78 ASP79 ASN80 VAL81 HIS82 GLY83 GLU84 SER85 GLY86 LEU87 ASP88 GLY89 PRO90 ALA91 LEU92 PRO93 GLU94 PRO95 THR96 PHE97 ALA98 PRO99 GLN100 ASN101 CYS102 THR103 ALA104 VAL105 GLU106 LEU107 MET108 ALA109 LYS110 THR111 LEU112 ARG113 GLU114 SER115 ALA116 GLU117 PRO118 VAL119 THR120 ILE121 VAL122 SER123 THR124 GLY125 PRO126 GLN127 THR128 ASN129 VAL130 ALA131 LEU132 LEU133 LEU134 ASN135 SER136 HIS137 PRO138 GLU139 LEU140 HIS141 SER142 LYS143 ILE144 ALA145 ARG146 ILE147 VAL148 ILE149 MET150 GLY151 GLY152 ALA153 MET154 GLY155 LEU156 GLY157 ASN158 TRP159 THR160 PRO161 ALA162 ALA163 GLU164 PHE165 ASN166 ILE167 TYR168 VAL169 ASP170 PRO171 GLU172 ALA173 ALA174 GLU175 ILE176 VAL177 PHE178 GLN179 SER180 GLY181 ILE182 PRO183 VAL184 VAL185 MET186 ALA187 GLY188 LEU189 ASP190 VAL191 THR192 HIS193 LYS194 ALA195 GLN196 ILE197 HIS198 VAL199 GLU200 ASP201 THR202 GLU203 ARG204 PHE205 ARG206 ALA207 ILE208 GLY209 ASN210 PRO211 VAL212 SER213 THR214 ILE215 VAL216 ALA217 GLU218 LEU219 LEU220 ASP221 PHE222 PHE223 LEU224 GLU230 LYS231 TRP232 GLY233 PHE234 VAL235 GLY236 ALA237 PRO238 LEU239 HIS240 ASP241 PRO242 CYS243 THR244 ILE245 ALA246 TRP247 LEU248 LEU249 LYS250 PRO251 GLU252 LEU253 PHE254 THR255 SER256 VAL257 GLU258 ARG259 TRP260 VAL261 GLY262 VAL263 GLU264 THR265 GLN266 GLY267 LYS268 TYR269 THR270 GLN271 GLY272 MET273 THR274 VAL275 VAL276 ASP277 TYR278 TYR279 TYR280 LEU281 THR282 GLY283 ASN284 LYS285 PRO286 ASN287 ALA288 THR289 VAL290 MET291 VAL292 ASP293 VAL294 ASP295 ARG296 GLN297 GLY298 PHE299 VAL300 ASP301 LEU302 LEU303 ALA304 ASP305 ARG306 LEU307 LYS308 PHE309 TYR310 ALA311
Unit 2 SER1 ALA2 LEU3 PRO4 ILE5 LEU6 LEU7 ASP8 CYS9 ASP10 PRO11 GLY12 HIS13 ASP14 ASP15 ALA16 ILE17 ALA18 ILE19 VAL20 LEU21 ALA22 LEU23 ALA24 SER25 PRO26 GLU27 LEU28 ASP29 VAL30 LYS31 ALA32 ILE33 THR34 SER35 SER36 ALA37 GLY38 ASN39 GLN40 THR41 PRO42 GLU43 LYS44 THR45 LEU46 ARG47 ASN48 VAL49 LEU50 ARG51 MET52 LEU53 THR54 LEU55 LEU56 ASN57 ARG58 THR59 ASP60 ILE61 PRO62 VAL63 ALA64 GLY65 GLY66 ALA67 VAL68 LYS69 PRO70 LEU71 MET72 ARG73 GLU74 LEU75 GLY86 LEU87 ASP88 GLY89 PRO90 ALA91 LEU92 PRO93 GLU94 PRO95 THR96 PHE97 ALA98 PRO99 GLN100 ASN101 CYS102 THR103 ALA104 VAL105 GLU106 LEU107 MET108 ALA109 LYS110 THR111 LEU112 ARG113 GLU114 SER115 ALA116 GLU117 PRO118 VAL119 THR120 ILE121 VAL122 SER123 THR124 GLY125 PRO126 GLN127 THR128 ASN129 VAL130 ALA131 LEU132 LEU133 LEU134 ASN135 SER136 HIS137 PRO138 GLU139 LEU140 HIS141 SER142 LYS143 ILE144 ALA145 ARG146 ILE147 VAL148 ILE149 MET150 GLY151 GLY152 ALA153 MET154 GLY155 LEU156 GLY157 ASN158 TRP159 THR160 PRO161 ALA162 ALA163 GLU164 PHE165 ASN166 ILE167 TYR168 VAL169 ASP170 PRO171 GLU172 ALA173 ALA174 GLU175 ILE176 VAL177 PHE178 GLN179 SER180 GLY181 ILE182 PRO183 VAL184 VAL185 MET186 ALA187 GLY188 LEU189 ASP190 VAL191 THR192 HIS193 LYS194 ALA195 GLN196 ILE197 HIS198 VAL199 GLU200 ASP201 THR202 GLU203 ARG204 PHE205 ARG206 ALA207 ILE208 GLY209 ASN210 PRO211 VAL212 SER213 THR214 ILE215 VAL216 ALA217 GLU218 LEU219 LEU220 ASP221 PHE222 PHE223 LEU224 LYS231 TRP232 GLY233 PHE234 VAL235 GLY236 ALA237 PRO238 LEU239 HIS240 ASP241 PRO242 CYS243 THR244 ILE245 ALA246 TRP247 LEU248 LEU249 LYS250 PRO251 GLU252 LEU253 PHE254 THR255 SER256 VAL257 GLU258 ARG259 TRP260 VAL261 GLY262 VAL263 GLU264 THR265 GLN266 GLY267 LYS268 TYR269 THR270 GLN271 GLY272 MET273 THR274 VAL275 VAL276 ASP277 TYR278 TYR279 TYR280 LEU281 THR282 GLY283 ASN284 LYS285 PRO286 ASN287 ALA288 THR289 VAL290 MET291 VAL292 ASP293 VAL294 ASP295 ARG296 GLN297 GLY298 PHE299 VAL300 ASP301 LEU302 LEU303 ALA304 ASP305 ARG306 LEU307 LYS308 PHE309 TYR310 ALA311
Unit 3 ALA2 LEU3 PRO4 ILE5 LEU6 LEU7 ASP8 CYS9 ASP10 PRO11 GLY12 HIS13 ASP14 ASP15 ALA16 ILE17 ALA18 ILE19 VAL20 LEU21 ALA22 LEU23 ALA24 SER25 PRO26 GLU27 LEU28 ASP29 VAL30 LYS31 ALA32 ILE33 THR34 SER35 SER36 ALA37 GLY38 ASN39 GLN40 THR41 PRO42 GLU43 LYS44 THR45 LEU46 ARG47 ASN48 VAL49 LEU50 ARG51 MET52 LEU53 THR54 LEU55 LEU56 ASN57 ARG58 THR59 ASP60 ILE61 PRO62 VAL63 ALA64 GLY65 GLY66 ALA67 VAL68 LYS69 PRO70 LEU71 MET72 ARG73 GLU74 LEU75 GLY86 LEU87 ASP88 GLY89 PRO90 ALA91 LEU92 PRO93 GLU94 PRO95 THR96 PHE97 ALA98 PRO99 GLN100 ASN101 CYS102 THR103 ALA104 VAL105 GLU106 LEU107 MET108 ALA109 LYS110 THR111 LEU112 ARG113 GLU114 SER115 ALA116 GLU117 PRO118 VAL119 THR120 ILE121 VAL122 SER123 THR124 GLY125 PRO126 GLN127 THR128 ASN129 VAL130 ALA131 LEU132 LEU133 LEU134 ASN135 SER136 HIS137 PRO138 GLU139 LEU140 HIS141 SER142 LYS143 ILE144 ALA145 ARG146 ILE147 VAL148 ILE149 MET150 GLY151 GLY152 ALA153 MET154 GLY155 LEU156 GLY157 ASN158 TRP159 THR160 PRO161 ALA162 ALA163 GLU164 PHE165 ASN166 ILE167 TYR168 VAL169 ASP170 PRO171 GLU172 ALA173 ALA174 GLU175 ILE176 VAL177 PHE178 GLN179 SER180 GLY181 ILE182 PRO183 VAL184 VAL185 MET186 ALA187 GLY188 LEU189 ASP190 VAL191 THR192 HIS193 LYS194 ALA195 GLN196 ILE197 HIS198 VAL199 GLU200 ASP201 THR202 GLU203 ARG204 PHE205 ARG206 ALA207 ILE208 GLY209 ASN210 PRO211 VAL212 SER213 THR214 ILE215 VAL216 ALA217 GLU218 LEU219 LEU220 ASP221 PHE222 GLU230 LYS231 TRP232 GLY233 PHE234 VAL235 GLY236 ALA237 PRO238 LEU239 HIS240 ASP241 PRO242 CYS243 THR244 ILE245 ALA246 TRP247 LEU248 LEU249 LYS250 PRO251 GLU252 LEU253 PHE254 THR255 SER256 VAL257 GLU258 ARG259 TRP260 VAL261 GLY262 VAL263 GLU264 THR265 GLN266 GLY267 LYS268 TYR269 THR270 GLN271 GLY272 MET273 THR274 VAL275 VAL276 ASP277 TYR278 TYR279 TYR280 LEU281 THR282 GLY283 ASN284 LYS285 PRO286 ASN287 ALA288 THR289 VAL290 MET291 VAL292 ASP293 VAL294 ASP295 ARG296 GLN297 GLY298 PHE299 VAL300 ASP301 LEU302 LEU303 ALA304 ASP305 ARG306 LEU307 LYS308 PHE309 TYR310 ALA311
Unit 4 GLY0 SER1 ALA2 LEU3 PRO4 ILE5 LEU6 LEU7 ASP8 CYS9 ASP10 PRO11 GLY12 HIS13 ASP14 ASP15 ALA16 ILE17 ALA18 ILE19 VAL20 LEU21 ALA22 LEU23 ALA24 SER25 PRO26 GLU27 LEU28 ASP29 VAL30 LYS31 ALA32 ILE33 THR34 SER35 SER36 ALA37 GLY38 ASN39 GLN40 THR41 PRO42 GLU43 LYS44 THR45 LEU46 ARG47 ASN48 VAL49 LEU50 ARG51 MET52 LEU53 THR54 LEU55 LEU56 ASN57 ARG58 THR59 ASP60 ILE61 PRO62 VAL63 ALA64 GLY65 GLY66 ALA67 VAL68 LYS69 PRO70 LEU71 MET72 ARG73 GLU74 LEU75 ILE76 SER85 GLY86 LEU87 ASP88 GLY89 PRO90 ALA91 LEU92 PRO93 GLU94 PRO95 THR96 PHE97 ALA98 PRO99 GLN100 ASN101 CYS102 THR103 ALA104 VAL105 GLU106 LEU107 MET108 ALA109 LYS110 THR111 LEU112 ARG113 GLU114 SER115 ALA116 GLU117 PRO118 VAL119 THR120 ILE121 VAL122 SER123 THR124 GLY125 PRO126 GLN127 THR128 ASN129 VAL130 ALA131 LEU132 LEU133 LEU134 ASN135 SER136 HIS137 PRO138 GLU139 LEU140 HIS141 SER142 LYS143 ILE144 ALA145 ARG146 ILE147 VAL148 ILE149 MET150 GLY151 GLY152 ALA153 MET154 GLY155 LEU156 GLY157 ASN158 TRP159 THR160 PRO161 ALA162 ALA163 GLU164 PHE165 ASN166 ILE167 TYR168 VAL169 ASP170 PRO171 GLU172 ALA173 ALA174 GLU175 ILE176 VAL177 PHE178 GLN179 SER180 GLY181 ILE182 PRO183 VAL184 VAL185 MET186 ALA187 GLY188 LEU189 ASP190 VAL191 THR192 HIS193 LYS194 ALA195 GLN196 ILE197 HIS198 VAL199 GLU200 ASP201 THR202 GLU203 ARG204 PHE205 ARG206 ALA207 ILE208 GLY209 ASN210 PRO211 VAL212 SER213 THR214 ILE215 VAL216 ALA217 GLU218 LEU219 LEU220 ASP221 PHE222 PHE223 LEU224 GLU225 TYR226 HIS227 LYS228 ASP229 GLU230 LYS231 TRP232 GLY233 PHE234 VAL235 GLY236 ALA237 PRO238 LEU239 HIS240 ASP241 PRO242 CYS243 THR244 ILE245 ALA246 TRP247 LEU248 LEU249 LYS250 PRO251 GLU252 LEU253 PHE254 THR255 SER256 VAL257 GLU258 ARG259 TRP260 VAL261 GLY262 VAL263 GLU264 THR265 GLN266 GLY267 LYS268 TYR269 THR270 GLN271 GLY272 MET273 THR274 VAL275 VAL276 ASP277 TYR278 TYR279 TYR280 LEU281 THR282 GLY283 ASN284 LYS285 PRO286 ASN287 ALA288 THR289 VAL290 MET291 VAL292 ASP293 VAL294 ASP295 ARG296 GLN297 GLY298 PHE299 VAL300 ASP301 LEU302 LEU303 ALA304 ASP305 ARG306 LEU307 LYS308 PHE309 TYR310 ALA311
Ligands
Unit 5 CA501 DNB502 BME1102
Unit 6 CA501 DNB502
Unit 7 CA501 DNB502
Unit 8 CA501 DNB502
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany