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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH REGULAT AND D155871
Keywords PHOSPHODIESTERASE, PDE4D, UCR2, ALTERNATIVE SPLICING, CAMP, CYTOPLASM, CYTOSKELETON, HYDROLASE, MEMBRANE, METAL-BINDING PHOSPHOPROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3G4G     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  A 338 2725 0
2  Protein   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  B 336 2712 0
3  Protein   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  C 339 2739 0
4  Protein   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  D 337 2716 0
5  Ligand   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  A 4 0 31
6  Ligand   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  B 4 0 31
7  Ligand   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  C 4 0 31
8  Ligand   CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D  D 4 0 31
9 Water     167 0 167
total       1533 10892 291

Proteins
Unit 1 ASN191 GLN192 VAL193 SER194 GLU195 PHE196 ILE197 SER198 ASN199 THR200 PHE201 LEU202 ASP203 GLU255 ASP256 VAL257 LEU258 ALA259 LYS260 GLU261 LEU262 GLU263 ASP264 VAL265 ASN266 LYS267 TRP268 GLY269 LEU270 HIS271 VAL272 PHE273 ARG274 ILE275 ALA276 GLU277 LEU278 SER279 GLY280 ASN281 ARG282 PRO283 LEU284 THR285 VAL286 ILE287 MET288 HIS289 THR290 ILE291 PHE292 GLN293 GLU294 ARG295 ASP296 LEU297 LEU298 LYS299 THR300 PHE301 LYS302 ILE303 PRO304 VAL305 ASP306 THR307 LEU308 ILE309 THR310 TYR311 LEU312 MET313 THR314 LEU315 GLU316 ASP317 HIS318 TYR319 HIS320 ALA321 ASP322 VAL323 ALA324 TYR325 HIS326 ASN327 ASN328 ILE329 HIS330 ALA331 ALA332 ASP333 VAL334 VAL335 GLN336 SER337 THR338 HIS339 VAL340 LEU341 LEU342 SER343 THR344 PRO345 ALA346 LEU347 GLU348 ALA349 VAL350 PHE351 THR352 ASP353 LEU354 GLU355 ILE356 LEU357 ALA358 ALA359 ILE360 PHE361 ALA362 SER363 ALA364 ILE365 HIS366 ASP367 VAL368 ASP369 HIS370 PRO371 GLY372 VAL373 SER374 ASN375 GLN376 PHE377 LEU378 ILE379 ASN380 THR381 ASN382 SER383 GLU384 LEU385 ALA386 LEU387 MET388 TYR389 ASN390 ASP391 SER392 SER393 VAL394 LEU395 GLU396 ASN397 HIS398 HIS399 LEU400 ALA401 VAL402 GLY403 PHE404 LYS405 LEU406 LEU407 GLN408 GLU409 GLU410 ASN411 CYS412 ASP413 ILE414 PHE415 GLN416 ASN417 LEU418 THR419 LYS420 LYS421 GLN422 ARG423 GLN424 SER425 LEU426 ARG427 LYS428 MET429 VAL430 ILE431 ASP432 ILE433 VAL434 LEU435 ALA436 THR437 ASP438 MET439 SER440 LYS441 HIS442 MET443 ASN444 LEU445 LEU446 ALA447 ASP448 LEU449 LYS450 THR451 MET452 VAL453 GLU454 THR455 LYS456 LYS457 VAL458 THR459 SER460 SER461 GLY462 VAL463 LEU464 LEU465 LEU466 ASP467 ASN468 TYR469 SER470 ASP471 ARG472 ILE473 GLN474 VAL475 LEU476 GLN477 ASN478 MET479 VAL480 HIS481 CYS482 ALA483 ASP484 LEU485 SER486 ASN487 PRO488 THR489 LYS490 PRO491 LEU492 GLN493 LEU494 TYR495 ARG496 GLN497 TRP498 THR499 ASP500 ARG501 ILE502 MET503 GLU504 GLU505 PHE506 PHE507 ARG508 GLN509 GLY510 ASP511 ARG512 GLU513 ARG514 GLU515 ARG516 GLY517 MET518 GLU519 ILE520 SER521 PRO522 MET523 CYS524 ASP525 LYS526 HIS527 ASN528 ALA529 SER530 VAL531 GLU532 LYS533 SER534 GLN535 VAL536 GLY537 PHE538 ILE539 ASP540 TYR541 ILE542 VAL543 HIS544 PRO545 LEU546 TRP547 GLU548 THR549 TRP550 ALA551 ASP552 LEU553 VAL554 HIS555 PRO556 ASP557 ALA558 GLN559 ASP560 ILE561 LEU562 ASP563 THR564 LEU565 GLU566 ASP567 ASN568 ARG569 GLU570 TRP571 TYR572 GLN573 SER574 THR575 ILE576 PRO577 GLN578 ALA579
Unit 2 ASN191 GLN192 VAL193 SER194 GLU195 PHE196 ILE197 SER198 ASN199 THR200 PHE201 LEU202 ASP203 ASP256 VAL257 LEU258 ALA259 LYS260 GLU261 LEU262 GLU263 ASP264 VAL265 ASN266 LYS267 TRP268 GLY269 LEU270 HIS271 VAL272 PHE273 ARG274 ILE275 ALA276 GLU277 LEU278 SER279 GLY280 ASN281 ARG282 PRO283 LEU284 THR285 VAL286 ILE287 MET288 HIS289 THR290 ILE291 PHE292 GLN293 GLU294 ARG295 ASP296 LEU297 LEU298 LYS299 THR300 PHE301 LYS302 ILE303 PRO304 VAL305 ASP306 THR307 LEU308 ILE309 THR310 TYR311 LEU312 MET313 THR314 LEU315 GLU316 ASP317 HIS318 TYR319 HIS320 ALA321 ASP322 VAL323 ALA324 TYR325 HIS326 ASN327 ASN328 ILE329 HIS330 ALA331 ALA332 ASP333 VAL334 VAL335 GLN336 SER337 THR338 HIS339 VAL340 LEU341 LEU342 SER343 THR344 PRO345 ALA346 LEU347 GLU348 ALA349 VAL350 PHE351 THR352 ASP353 LEU354 GLU355 ILE356 LEU357 ALA358 ALA359 ILE360 PHE361 ALA362 SER363 ALA364 ILE365 HIS366 ASP367 VAL368 ASP369 HIS370 PRO371 GLY372 VAL373 SER374 ASN375 GLN376 PHE377 LEU378 ILE379 ASN380 THR381 ASN382 SER383 GLU384 LEU385 ALA386 LEU387 MET388 TYR389 ASN390 ASP391 SER392 SER393 VAL394 LEU395 GLU396 ASN397 HIS398 HIS399 LEU400 ALA401 VAL402 GLY403 PHE404 LYS405 LEU406 LEU407 GLN408 GLU409 GLU410 ASN411 CYS412 ASP413 ILE414 PHE415 GLN416 ASN417 LEU418 THR419 LYS420 LYS421 GLN422 ARG423 GLN424 SER425 LEU426 ARG427 LYS428 MET429 VAL430 ILE431 ASP432 ILE433 VAL434 LEU435 ALA436 THR437 ASP438 MET439 SER440 LYS441 HIS442 MET443 ASN444 LEU445 LEU446 ALA447 ASP448 LEU449 LYS450 THR451 MET452 VAL453 GLU454 THR455 LYS456 LYS457 VAL458 THR459 SER460 SER461 GLY462 VAL463 LEU464 LEU465 LEU466 ASP467 ASN468 TYR469 SER470 ASP471 ARG472 ILE473 GLN474 VAL475 LEU476 GLN477 ASN478 MET479 VAL480 HIS481 CYS482 ALA483 ASP484 LEU485 SER486 ASN487 PRO488 THR489 LYS490 PRO491 LEU492 GLN493 LEU494 TYR495 ARG496 GLN497 TRP498 THR499 ASP500 ARG501 ILE502 MET503 GLU504 GLU505 PHE506 PHE507 ARG508 GLN509 GLY510 ASP511 ARG512 GLU513 ARG514 GLU515 ARG516 GLY517 MET518 GLU519 ILE520 SER521 PRO522 MET523 CYS524 ASP525 LYS526 HIS527 ASN528 ALA529 SER530 VAL531 GLU532 LYS533 SER534 GLN535 VAL536 GLY537 PHE538 ILE539 ASP540 TYR541 ILE542 VAL543 HIS544 PRO545 LEU546 TRP547 GLU548 THR549 TRP550 ALA551 ASP552 LEU553 VAL554 HIS555 PRO556 ASP557 ALA558 GLN559 ASP560 ILE561 LEU562 ASP563 THR564 LEU565 GLU566 ASP567 ASN568 ARG569 GLU570 TRP571 TYR572 GLN573 SER574 THR575 ILE576 PRO577 GLN578
Unit 3 ASN191 GLN192 VAL193 SER194 GLU195 PHE196 ILE197 SER198 ASN199 THR200 PHE201 LEU202 ASP203 GLU255 ASP256 VAL257 LEU258 ALA259 LYS260 GLU261 LEU262 GLU263 ASP264 VAL265 ASN266 LYS267 TRP268 GLY269 LEU270 HIS271 VAL272 PHE273 ARG274 ILE275 ALA276 GLU277 LEU278 SER279 GLY280 ASN281 ARG282 PRO283 LEU284 THR285 VAL286 ILE287 MET288 HIS289 THR290 ILE291 PHE292 GLN293 GLU294 ARG295 ASP296 LEU297 LEU298 LYS299 THR300 PHE301 LYS302 ILE303 PRO304 VAL305 ASP306 THR307 LEU308 ILE309 THR310 TYR311 LEU312 MET313 THR314 LEU315 GLU316 ASP317 HIS318 TYR319 HIS320 ALA321 ASP322 VAL323 ALA324 TYR325 HIS326 ASN327 ASN328 ILE329 HIS330 ALA331 ALA332 ASP333 VAL334 VAL335 GLN336 SER337 THR338 HIS339 VAL340 LEU341 LEU342 SER343 THR344 PRO345 ALA346 LEU347 GLU348 ALA349 VAL350 PHE351 THR352 ASP353 LEU354 GLU355 ILE356 LEU357 ALA358 ALA359 ILE360 PHE361 ALA362 SER363 ALA364 ILE365 HIS366 ASP367 VAL368 ASP369 HIS370 PRO371 GLY372 VAL373 SER374 ASN375 GLN376 PHE377 LEU378 ILE379 ASN380 THR381 ASN382 SER383 GLU384 LEU385 ALA386 LEU387 MET388 TYR389 ASN390 ASP391 SER392 SER393 VAL394 LEU395 GLU396 ASN397 HIS398 HIS399 LEU400 ALA401 VAL402 GLY403 PHE404 LYS405 LEU406 LEU407 GLN408 GLU409 GLU410 ASN411 CYS412 ASP413 ILE414 PHE415 GLN416 ASN417 LEU418 THR419 LYS420 LYS421 GLN422 ARG423 GLN424 SER425 LEU426 ARG427 LYS428 MET429 VAL430 ILE431 ASP432 ILE433 VAL434 LEU435 ALA436 THR437 ASP438 MET439 SER440 LYS441 HIS442 MET443 ASN444 LEU445 LEU446 ALA447 ASP448 LEU449 LYS450 THR451 MET452 VAL453 GLU454 THR455 LYS456 LYS457 VAL458 THR459 SER460 SER461 GLY462 VAL463 LEU464 LEU465 LEU466 ASP467 ASN468 TYR469 SER470 ASP471 ARG472 ILE473 GLN474 VAL475 LEU476 GLN477 ASN478 MET479 VAL480 HIS481 CYS482 ALA483 ASP484 LEU485 SER486 ASN487 PRO488 THR489 LYS490 PRO491 LEU492 GLN493 LEU494 TYR495 ARG496 GLN497 TRP498 THR499 ASP500 ARG501 ILE502 MET503 GLU504 GLU505 PHE506 PHE507 ARG508 GLN509 GLY510 ASP511 ARG512 GLU513 ARG514 GLU515 ARG516 GLY517 MET518 GLU519 ILE520 SER521 PRO522 MET523 CYS524 ASP525 LYS526 HIS527 ASN528 ALA529 SER530 VAL531 GLU532 LYS533 SER534 GLN535 VAL536 GLY537 PHE538 ILE539 ASP540 TYR541 ILE542 VAL543 HIS544 PRO545 LEU546 TRP547 GLU548 THR549 TRP550 ALA551 ASP552 LEU553 VAL554 HIS555 PRO556 ASP557 ALA558 GLN559 ASP560 ILE561 LEU562 ASP563 THR564 LEU565 GLU566 ASP567 ASN568 ARG569 GLU570 TRP571 TYR572 GLN573 SER574 THR575 ILE576 PRO577 GLN578 ALA579 HIS580
Unit 4 ASN191 GLN192 VAL193 SER194 GLU195 PHE196 ILE197 SER198 ASN199 THR200 PHE201 LEU202 ASP203 GLU255 ASP256 VAL257 LEU258 ALA259 LYS260 GLU261 LEU262 GLU263 ASP264 VAL265 ASN266 LYS267 TRP268 GLY269 LEU270 HIS271 VAL272 PHE273 ARG274 ILE275 ALA276 GLU277 LEU278 SER279 GLY280 ASN281 ARG282 PRO283 LEU284 THR285 VAL286 ILE287 MET288 HIS289 THR290 ILE291 PHE292 GLN293 GLU294 ARG295 ASP296 LEU297 LEU298 LYS299 THR300 PHE301 LYS302 ILE303 PRO304 VAL305 ASP306 THR307 LEU308 ILE309 THR310 TYR311 LEU312 MET313 THR314 LEU315 GLU316 ASP317 HIS318 TYR319 HIS320 ALA321 ASP322 VAL323 ALA324 TYR325 HIS326 ASN327 ASN328 ILE329 HIS330 ALA331 ALA332 ASP333 VAL334 VAL335 GLN336 SER337 THR338 HIS339 VAL340 LEU341 LEU342 SER343 THR344 PRO345 ALA346 LEU347 GLU348 ALA349 VAL350 PHE351 THR352 ASP353 LEU354 GLU355 ILE356 LEU357 ALA358 ALA359 ILE360 PHE361 ALA362 SER363 ALA364 ILE365 HIS366 ASP367 VAL368 ASP369 HIS370 PRO371 GLY372 VAL373 SER374 ASN375 GLN376 PHE377 LEU378 ILE379 ASN380 THR381 ASN382 SER383 GLU384 LEU385 ALA386 LEU387 MET388 TYR389 ASN390 ASP391 SER392 SER393 VAL394 LEU395 GLU396 ASN397 HIS398 HIS399 LEU400 ALA401 VAL402 GLY403 PHE404 LYS405 LEU406 LEU407 GLN408 GLU409 GLU410 ASN411 CYS412 ASP413 ILE414 PHE415 GLN416 ASN417 LEU418 THR419 LYS420 LYS421 GLN422 ARG423 GLN424 SER425 LEU426 ARG427 LYS428 MET429 VAL430 ILE431 ASP432 ILE433 VAL434 LEU435 ALA436 THR437 ASP438 MET439 SER440 LYS441 HIS442 MET443 ASN444 LEU445 LEU446 ALA447 ASP448 LEU449 LYS450 THR451 MET452 VAL453 GLU454 THR455 LYS456 LYS457 VAL458 THR459 SER460 SER461 GLY462 VAL463 LEU464 LEU465 LEU466 ASP467 ASN468 TYR469 SER470 ASP471 ARG472 ILE473 GLN474 VAL475 LEU476 GLN477 ASN478 MET479 VAL480 HIS481 CYS482 ALA483 ASP484 LEU485 SER486 ASN487 PRO488 THR489 LYS490 PRO491 LEU492 GLN493 LEU494 TYR495 ARG496 GLN497 TRP498 THR499 ASP500 ARG501 ILE502 MET503 GLU504 GLU505 PHE506 PHE507 ARG508 GLN509 GLY510 ASP511 ARG512 GLU513 ARG514 GLU515 ARG516 GLY517 MET518 GLU519 ILE520 SER521 PRO522 MET523 CYS524 ASP525 LYS526 HIS527 ASN528 ALA529 SER530 VAL531 GLU532 LYS533 SER534 GLN535 VAL536 GLY537 PHE538 ILE539 ASP540 TYR541 ILE542 VAL543 HIS544 PRO545 LEU546 TRP547 GLU548 THR549 TRP550 ALA551 ASP552 LEU553 VAL554 HIS555 PRO556 ASP557 ALA558 GLN559 ASP560 ILE561 LEU562 ASP563 THR564 LEU565 GLU566 ASP567 ASN568 ARG569 GLU570 TRP571 TYR572 GLN573 SER574 THR575 ILE576 PRO577 GLN578

Ligands
Unit 5 CA4 ZN801 MG802 D71901
Unit 6 CA1 ZN803 MG804 D71902
Unit 7 CA2 ZN805 MG806 D71903
Unit 8 CA3 ZN807 MG808 D71904

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany