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Title | CRYSTAL STRUCTURE OF THE HUMAN TLR4-HUMAN MD-2-E.COLI LPS RA | |
Keywords | LEUCINE RICH REPEAT, GLYCOPROTEIN, IMMUNE RESPONSE, INFLAMMA RESPONSE, INNATE IMMUNITY, MEMBRANE, RECEPTOR, TRANSMEMBRAN SECRETED, IMMUNE SYSTEM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3FXI | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | TOLL-LIKE RECEPTOR 4 | A | 601 | 4803 | 0 |
2 | Protein | TOLL-LIKE RECEPTOR 4 | B | 601 | 4803 | 0 |
3 | Protein | LYMPHOCYTE ANTIGEN 96 | C | 140 | 1133 | 0 |
4 | Protein | LYMPHOCYTE ANTIGEN 96 | D | 140 | 1133 | 0 |
5 | Ligand | E | 7 | 0 | 92 | |
6 | Ligand | F | 2 | 0 | 28 | |
7 | Ligand | G | 2 | 0 | 28 | |
8 | Ligand | H | 7 | 0 | 92 | |
9 | Ligand | I | 2 | 0 | 28 | |
10 | Ligand | J | 2 | 0 | 28 | |
11 | Ligand | TOLL-LIKE RECEPTOR 4 | A | 14 | 0 | 151 |
12 | Ligand | TOLL-LIKE RECEPTOR 4 | B | 14 | 0 | 151 |
13 | Ligand | LYMPHOCYTE ANTIGEN 96 | C | 1 | 0 | 14 |
14 | Ligand | LYMPHOCYTE ANTIGEN 96 | D | 1 | 0 | 14 |
15 | Water | 2 | 0 | 2 | ||
total | 1536 | 11872 | 628 |
Unit 1 | GLU27 PRO28 CYS29 VAL30 GLU31 VAL32 VAL33 PRO34 ASN35 ILE36 THR37 TYR38 GLN39 CYS40 MET41 GLU42 LEU43 ASN44 PHE45 TYR46 LYS47 ILE48 PRO49 ASP50 ASN51 LEU52 PRO53 PHE54 SER55 THR56 LYS57 ASN58 LEU59 ASP60 LEU61 SER62 PHE63 ASN64 PRO65 LEU66 ARG67 HIS68 LEU69 GLY70 SER71 TYR72 SER73 PHE74 PHE75 SER76 PHE77 PRO78 GLU79 LEU80 GLN81 VAL82 LEU83 ASP84 LEU85 SER86 ARG87 CYS88 GLU89 ILE90 GLN91 THR92 ILE93 GLU94 ASP95 GLY96 ALA97 TYR98 GLN99 SER100 LEU101 SER102 HIS103 LEU104 SER105 THR106 LEU107 ILE108 LEU109 THR110 GLY111 ASN112 PRO113 ILE114 GLN115 SER116 LEU117 ALA118 LEU119 GLY120 ALA121 PHE122 SER123 GLY124 LEU125 SER126 SER127 LEU128 GLN129 LYS130 LEU131 VAL132 ALA133 VAL134 GLU135 THR136 ASN137 LEU138 ALA139 SER140 LEU141 GLU142 ASN143 PHE144 PRO145 ILE146 GLY147 HIS148 LEU149 LYS150 THR151 LEU152 LYS153 GLU154 LEU155 ASN156 VAL157 ALA158 HIS159 ASN160 LEU161 ILE162 GLN163 SER164 PHE165 LYS166 LEU167 PRO168 GLU169 TYR170 PHE171 SER172 ASN173 LEU174 THR175 ASN176 LEU177 GLU178 HIS179 LEU180 ASP181 LEU182 SER183 SER184 ASN185 LYS186 ILE187 GLN188 SER189 ILE190 TYR191 CYS192 THR193 ASP194 LEU195 ARG196 VAL197 LEU198 HIS199 GLN200 MET201 PRO202 LEU203 LEU204 ASN205 LEU206 SER207 LEU208 ASP209 LEU210 SER211 LEU212 ASN213 PRO214 MET215 ASN216 PHE217 ILE218 GLN219 PRO220 GLY221 ALA222 PHE223 LYS224 GLU225 ILE226 ARG227 LEU228 HIS229 LYS230 LEU231 THR232 LEU233 ARG234 ASN235 ASN236 PHE237 ASP238 SER239 LEU240 ASN241 VAL242 MET243 LYS244 THR245 CYS246 ILE247 GLN248 GLY249 LEU250 ALA251 GLY252 LEU253 GLU254 VAL255 HIS256 ARG257 LEU258 VAL259 LEU260 GLY261 GLU262 PHE263 ARG264 ASN265 GLU266 GLY267 ASN268 LEU269 GLU270 LYS271 PHE272 ASP273 LYS274 SER275 ALA276 LEU277 GLU278 GLY279 LEU280 CYS281 ASN282 LEU283 THR284 ILE285 GLU286 GLU287 PHE288 ARG289 LEU290 ALA291 TYR292 LEU293 ASP294 TYR295 TYR296 LEU297 ASP298 ASP299 ILE300 ILE301 ASP302 LEU303 PHE304 ASN305 CYS306 LEU307 THR308 ASN309 VAL310 SER311 SER312 PHE313 SER314 LEU315 VAL316 SER317 VAL318 THR319 ILE320 GLU321 ARG322 VAL323 LYS324 ASP325 PHE326 SER327 TYR328 ASN329 PHE330 GLY331 TRP332 GLN333 HIS334 LEU335 GLU336 LEU337 VAL338 ASN339 CYS340 LYS341 PHE342 GLY343 GLN344 PHE345 PRO346 THR347 LEU348 LYS349 LEU350 LYS351 SER352 LEU353 LYS354 ARG355 LEU356 THR357 PHE358 THR359 SER360 ASN361 LYS362 GLY363 GLY364 ASN365 ALA366 PHE367 SER368 GLU369 VAL370 ASP371 LEU372 PRO373 SER374 LEU375 GLU376 PHE377 LEU378 ASP379 LEU380 SER381 ARG382 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627 |
Unit 2 | GLU27 PRO28 CYS29 VAL30 GLU31 VAL32 VAL33 PRO34 ASN35 ILE36 THR37 TYR38 GLN39 CYS40 MET41 GLU42 LEU43 ASN44 PHE45 TYR46 LYS47 ILE48 PRO49 ASP50 ASN51 LEU52 PRO53 PHE54 SER55 THR56 LYS57 ASN58 LEU59 ASP60 LEU61 SER62 PHE63 ASN64 PRO65 LEU66 ARG67 HIS68 LEU69 GLY70 SER71 TYR72 SER73 PHE74 PHE75 SER76 PHE77 PRO78 GLU79 LEU80 GLN81 VAL82 LEU83 ASP84 LEU85 SER86 ARG87 CYS88 GLU89 ILE90 GLN91 THR92 ILE93 GLU94 ASP95 GLY96 ALA97 TYR98 GLN99 SER100 LEU101 SER102 HIS103 LEU104 SER105 THR106 LEU107 ILE108 LEU109 THR110 GLY111 ASN112 PRO113 ILE114 GLN115 SER116 LEU117 ALA118 LEU119 GLY120 ALA121 PHE122 SER123 GLY124 LEU125 SER126 SER127 LEU128 GLN129 LYS130 LEU131 VAL132 ALA133 VAL134 GLU135 THR136 ASN137 LEU138 ALA139 SER140 LEU141 GLU142 ASN143 PHE144 PRO145 ILE146 GLY147 HIS148 LEU149 LYS150 THR151 LEU152 LYS153 GLU154 LEU155 ASN156 VAL157 ALA158 HIS159 ASN160 LEU161 ILE162 GLN163 SER164 PHE165 LYS166 LEU167 PRO168 GLU169 TYR170 PHE171 SER172 ASN173 LEU174 THR175 ASN176 LEU177 GLU178 HIS179 LEU180 ASP181 LEU182 SER183 SER184 ASN185 LYS186 ILE187 GLN188 SER189 ILE190 TYR191 CYS192 THR193 ASP194 LEU195 ARG196 VAL197 LEU198 HIS199 GLN200 MET201 PRO202 LEU203 LEU204 ASN205 LEU206 SER207 LEU208 ASP209 LEU210 SER211 LEU212 ASN213 PRO214 MET215 ASN216 PHE217 ILE218 GLN219 PRO220 GLY221 ALA222 PHE223 LYS224 GLU225 ILE226 ARG227 LEU228 HIS229 LYS230 LEU231 THR232 LEU233 ARG234 ASN235 ASN236 PHE237 ASP238 SER239 LEU240 ASN241 VAL242 MET243 LYS244 THR245 CYS246 ILE247 GLN248 GLY249 LEU250 ALA251 GLY252 LEU253 GLU254 VAL255 HIS256 ARG257 LEU258 VAL259 LEU260 GLY261 GLU262 PHE263 ARG264 ASN265 GLU266 GLY267 ASN268 LEU269 GLU270 LYS271 PHE272 ASP273 LYS274 SER275 ALA276 LEU277 GLU278 GLY279 LEU280 CYS281 ASN282 LEU283 THR284 ILE285 GLU286 GLU287 PHE288 ARG289 LEU290 ALA291 TYR292 LEU293 ASP294 TYR295 TYR296 LEU297 ASP298 ASP299 ILE300 ILE301 ASP302 LEU303 PHE304 ASN305 CYS306 LEU307 THR308 ASN309 VAL310 SER311 SER312 PHE313 SER314 LEU315 VAL316 SER317 VAL318 THR319 ILE320 GLU321 ARG322 VAL323 LYS324 ASP325 PHE326 SER327 TYR328 ASN329 PHE330 GLY331 TRP332 GLN333 HIS334 LEU335 GLU336 LEU337 VAL338 ASN339 CYS340 LYS341 PHE342 GLY343 GLN344 PHE345 PRO346 THR347 LEU348 LYS349 LEU350 LYS351 SER352 LEU353 LYS354 ARG355 LEU356 THR357 PHE358 THR359 SER360 ASN361 LYS362 GLY363 GLY364 ASN365 ALA366 PHE367 SER368 GLU369 VAL370 ASP371 LEU372 PRO373 SER374 LEU375 GLU376 PHE377 LEU378 ASP379 LEU380 SER381 ARG382 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627 |
Unit 3 | GLN19 LYS20 GLN21 TYR22 TRP23 VAL24 CYS25 ASN26 SER27 SER28 ASP29 ALA30 SER31 ILE32 SER33 TYR34 THR35 TYR36 CYS37 ASP38 LYS39 MET40 GLN41 TYR42 PRO43 ILE44 SER45 ILE46 ASN47 VAL48 ASN49 PRO50 CYS51 ILE52 GLU53 LEU54 LYS55 GLY56 SER57 LYS58 GLY59 LEU60 LEU61 HIS62 ILE63 PHE64 TYR65 ILE66 PRO67 ARG68 ARG69 ASP70 LEU71 LYS72 GLN73 LEU74 TYR75 PHE76 ASN77 LEU78 TYR79 ILE80 THR81 VAL82 ASN83 THR84 MET85 ASN86 LEU87 PRO88 LYS89 ARG90 LYS91 GLU92 VAL93 ILE94 CYS95 ARG96 GLY97 SER98 ASP99 ASP100 ASP101 TYR102 SER103 PHE104 CYS105 ARG106 ALA107 LEU108 LYS109 GLY110 GLU111 THR112 VAL113 ASN114 THR115 THR116 ILE117 SER118 PHE119 SER120 PHE121 LYS122 GLY123 ILE124 LYS125 PHE126 SER127 LYS128 GLY129 LYS130 TYR131 LYS132 CYS133 VAL134 VAL135 GLU136 ALA137 ILE138 SER139 GLY140 SER141 PRO142 GLU143 GLU144 MET145 LEU146 PHE147 CYS148 LEU149 GLU150 PHE151 VAL152 ILE153 LEU154 HIS155 GLN156 PRO157 ASN158 |
Unit 4 | GLN19 LYS20 GLN21 TYR22 TRP23 VAL24 CYS25 ASN26 SER27 SER28 ASP29 ALA30 SER31 ILE32 SER33 TYR34 THR35 TYR36 CYS37 ASP38 LYS39 MET40 GLN41 TYR42 PRO43 ILE44 SER45 ILE46 ASN47 VAL48 ASN49 PRO50 CYS51 ILE52 GLU53 LEU54 LYS55 GLY56 SER57 LYS58 GLY59 LEU60 LEU61 HIS62 ILE63 PHE64 TYR65 ILE66 PRO67 ARG68 ARG69 ASP70 LEU71 LYS72 GLN73 LEU74 TYR75 PHE76 ASN77 LEU78 TYR79 ILE80 THR81 VAL82 ASN83 THR84 MET85 ASN86 LEU87 PRO88 LYS89 ARG90 LYS91 GLU92 VAL93 ILE94 CYS95 ARG96 GLY97 SER98 ASP99 ASP100 ASP101 TYR102 SER103 PHE104 CYS105 ARG106 ALA107 LEU108 LYS109 GLY110 GLU111 THR112 VAL113 ASN114 THR115 THR116 ILE117 SER118 PHE119 SER120 PHE121 LYS122 GLY123 ILE124 LYS125 PHE126 SER127 LYS128 GLY129 LYS130 TYR131 LYS132 CYS133 VAL134 VAL135 GLU136 ALA137 ILE138 SER139 GLY140 SER141 PRO142 GLU143 GLU144 MET145 LEU146 PHE147 CYS148 LEU149 GLU150 PHE151 VAL152 ILE153 LEU154 HIS155 GLN156 PRO157 ASN158 |
Unit 5 | PA11 PA12 KDO3 GMH4 GMH5 GMH6 KDO7 |
Unit 6 | NAG1 NAG2 |
Unit 7 | NAG1 NAG2 |
Unit 8 | PA11 GCS2 KDO3 GMH4 GMH5 GMH6 KDO7 |
Unit 9 | NAG1 NAG2 |
Unit 10 | NAG1 NAG2 |
Unit 11 | NAG711 NAG721 NAG741 FTT1003 FTT1004 FTT1005 FTT1006 DAO1007 MYR1008 PO41010 PO41011 PO41017 PO41018 MG2001 |
Unit 12 | NAG811 NAG821 NAG841 FTT1003 FTT1004 FTT1005 FTT1006 DAO1007 MYR1008 PO41010 PO41011 PO41017 PO41018 MG2001 |
Unit 13 | NAG751 |
Unit 14 | NAG851 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |