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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A. AEOLICUS KSGA IN COMPLEX WITH RNA AN
Keywords KSGA, ROSSMANN-LIKE FOLD, RNA METHYLTRANSFERASE, MTASE, RNA, ANTIBIOTIC RESISTANCE, METHYLTRANSFERASE, RNA-BINDING, RRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSFERASE, TRANSFERA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIMETHYLADENOSINE TRANSFERASE  A 246 1985 0
2  RNA    C 22 474 0
3  RNA    D 22 474 0
4  Ligand   DIMETHYLADENOSINE TRANSFERASE  A 1 0 26
5  Ligand   5'-R(P*AP*AP*CP*CP*GP*UP*AP*GP*GP*GP*GP*AP*AP*CP* P*GP*GP*UP*U)-3'  D 1 0 1
6 Water     36 0 36
total       328 2933 63

Proteins
Unit 1 MET1 VAL2 ARG3 LEU4 LYS5 LYS6 SER7 PHE8 GLY9 GLN10 HIS11 LEU12 LEU13 VAL14 SER15 GLU16 GLY17 VAL18 LEU19 LYS20 LYS21 ILE22 ALA23 GLU24 GLU25 LEU26 ASN27 ILE28 GLU29 GLU30 GLY31 ASN32 THR33 VAL34 VAL35 GLU36 VAL37 GLY38 GLY39 GLY40 THR41 GLY42 ASN43 LEU44 THR45 LYS46 VAL47 LEU48 LEU49 GLN50 HIS51 PRO52 LEU53 LYS54 LYS55 LEU56 TYR57 VAL58 ILE59 GLU60 LEU61 ASP62 ARG63 GLU64 MET65 VAL66 GLU67 ASN68 LEU69 LYS70 SER71 ILE72 GLY73 ASP74 GLU75 ARG76 LEU77 GLU78 VAL79 ILE80 ASN81 GLU82 ASP83 ALA84 SER85 LYS86 PHE87 PRO88 PHE89 CYS90 SER91 LEU92 GLY93 LYS94 GLU95 LEU96 LYS97 VAL98 VAL99 GLY100 ASN101 LEU102 PRO103 TYR104 ASN105 VAL106 ALA107 SER108 LEU109 ILE110 ILE111 GLU112 ASN113 THR114 VAL115 TYR116 ASN117 LYS118 ASP119 CYS120 VAL121 PRO122 LEU123 ALA124 VAL125 PHE126 MET127 VAL128 GLN129 LYS130 GLU131 VAL132 ALA133 GLU134 LYS135 LEU136 GLN137 GLY138 LYS139 LYS140 ASP141 THR142 GLY143 TRP144 LEU145 SER146 VAL147 PHE148 VAL149 ARG150 THR151 PHE152 TYR153 ASP154 VAL155 ASN156 TYR157 VAL158 MET159 THR160 VAL161 PRO162 PRO163 ARG164 PHE165 PHE166 VAL167 PRO168 PRO169 PRO170 LYS171 VAL172 GLN173 SER174 ALA175 VAL176 ILE177 LYS178 LEU179 VAL180 LYS181 ASN182 GLU183 LYS184 PHE185 PRO186 VAL187 LYS188 ASP189 LEU190 LYS191 ASN192 TYR193 LYS194 LYS195 PHE196 LEU197 THR198 LYS199 ILE200 PHE201 GLN202 ASN203 ARG204 ARG205 LYS206 VAL207 LEU208 ARG209 LYS210 LYS211 ILE212 PRO213 GLU214 GLU215 LEU216 LEU217 LYS218 GLU219 ALA220 GLY221 ILE222 ASN223 PRO224 ASP225 ALA226 ARG227 VAL228 GLU229 GLN230 LEU231 SER232 LEU233 GLU234 ASP235 PHE236 PHE237 LYS238 LEU239 TYR240 ARG241 LEU242 ILE243 GLU244 ASP245 SER246

Nucleic acids
Unit 2 A1507 A1508 C1509 C1510 G1511 U1512 A1513 G1514 G1515 G1516 G1517 A1518 A1519 C1520 C1521 U1522 G1523 C1524 G1525 G1526 U1527 U1528
Unit 3 A1507 A1508 C1509 C1510 G1511 U1512 A1513 G1514 G1515 G1516 G1517 A1518 A1519 C1520 C1521 U1522 G1523 C1524 G1525 G1526 U1527 U1528

Ligands
Unit 4 SAH501
Unit 5 K500

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany