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Sequence, Chains, Asymmetric and Biological Units

Title CLASS II LIGASE RIBOZYME PRODUCT-TEMPLATE DUPLEX, STRUCTURE 2
Keywords RIBOZYME, LIGASE, 2'-5', 2-5, 2P5, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3FS0     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 10 217 0
2  RNA    B 11 232 0
3  Ligand   5'-R(*GP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3'  A 1 0 1
4  Ligand   5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*C)-3'  B 4 0 4
5 Water     12 0 12
total       38 449 17

Nucleic acids
Unit 1 G44 G45 U46 G47 A48 G49 G50 C51 U52 G53
Unit 2 C-6 C-5 A-4 G-3 U-2 C-1 G1 G2 A3 A4 C5

Ligands
Unit 3 MG103
Unit 4 MG104 MG108 MG109 MG140

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany