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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE S. POMBE RAT1-RAI1 COMPLEX
Keywords PROTEIN-PROTEIN COMPLEX, EXONUCLEASE, HYDROLASE, MRNA PROCES NUCLEASE, NUCLEUS, RRNA PROCESSING, TRANSCRIPTION, TRANSCRI REGULATION, TRANSCRIPTION TERMINATION, PHOSPHOPROTEIN, HYDR PROTEIN BINDING COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3FQD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   5'-3' EXORIBONUCLEASE 2  A 682 5430 120
2  Protein   PROTEIN DIN1  B 332 2633 88
3  Ligand   PROTEIN DIN1  B 2 0 7
4 Water     648 0 648
total       1664 8063 863

Proteins
Unit 1 ALA0 SER0A MSE1 GLY2 VAL3 PRO4 ALA5 LEU6 PHE7 ARG8 LEU9 LEU10 SER11 ARG12 LYS13 PHE14 ALA15 LYS16 VAL17 ILE18 THR19 PRO20 VAL21 ILE22 GLU23 ALA24 PRO25 THR26 GLU27 LYS28 LEU29 PRO30 ASP31 GLY32 THR33 GLU34 ILE35 GLU36 PRO37 ASP38 LEU39 SER40 LEU41 PRO42 ASN43 PRO44 ASN45 GLY46 VAL47 GLU48 CYS49 ASP50 ASN51 LEU52 TYR53 LEU54 ASP55 MSE56 ASN57 GLY58 ILE59 VAL60 HIS61 PRO62 CYS63 SER64 HIS65 PRO66 GLU67 ASP68 ARG69 PRO70 ALA71 PRO72 GLU73 THR74 GLU75 ASP76 GLU77 MSE78 MSE79 VAL80 ALA81 VAL82 PHE83 GLU84 TYR85 THR86 ASP87 ARG88 ILE89 LEU90 ALA91 MSE92 VAL93 ARG94 PRO95 ARG96 GLN97 LEU98 LEU99 PHE100 ILE101 ALA102 ILE103 ASP104 GLY105 VAL106 ALA107 PRO108 ARG109 ALA110 LYS111 MSE112 ASN113 GLN114 GLN115 ARG116 SER117 ARG118 ARG119 PHE120 ARG121 SER122 SER123 ARG124 GLU125 ALA126 ALA127 LEU128 LYS129 GLU130 GLU131 GLU132 LEU133 GLN134 ALA135 PHE136 ILE137 GLU138 GLU139 ALA140 LYS141 GLN142 GLN143 GLY144 ILE145 PRO146 ILE147 ASP148 GLU149 ASN150 ALA151 THR152 LYS153 LYS154 LYS155 SER156 TRP157 ASP158 SER159 ASN160 CYS161 ILE162 THR163 PRO164 GLY165 THR166 PRO167 PHE168 MSE169 ASP170 THR171 LEU172 ALA173 LYS174 SER175 LEU176 ARG177 TYR178 TYR179 ILE180 ILE181 ASN182 LYS183 LEU184 ASN185 SER186 ASP187 PRO188 CYS189 TRP190 ARG191 ASN192 VAL193 ARG194 PHE195 ILE196 LEU197 SER198 ASP199 ALA200 SER201 VAL202 PRO203 GLY204 GLU205 GLY206 GLU207 HIS208 LYS209 ILE210 MSE211 GLU212 PHE213 ILE214 ARG215 SER216 GLN217 ARG218 VAL219 LYS220 PRO221 GLU222 TYR223 ASP224 PRO225 ASN226 THR227 HIS228 HIS229 VAL230 VAL231 TYR232 GLY233 LEU234 ASP235 ALA236 ASP237 LEU238 ILE239 MSE240 LEU241 GLY242 LEU243 ALA244 THR245 HIS246 GLU247 PRO248 HIS249 PHE250 ARG251 VAL252 LEU253 ARG254 GLU255 ASP256 VAL257 PHE258 LYS268 GLU269 GLU270 ARG271 LEU272 GLY273 ILE274 LYS275 ARG276 LEU277 ASP278 ASP279 LYS290 PRO291 PHE292 ILE293 TRP294 LEU295 ASN296 VAL297 SER298 ILE299 LEU300 ARG301 GLU302 TYR303 LEU304 GLU305 VAL306 GLU307 LEU308 TYR309 VAL310 PRO311 ASN312 LEU313 PRO314 PHE315 PRO316 PHE317 ASP318 LEU319 GLU320 ARG321 ALA322 ILE323 ASP324 ASP325 TRP326 VAL327 PHE328 PHE329 ILE330 PHE331 PHE332 VAL333 GLY334 ASN335 ASP336 PHE337 LEU338 PRO339 HIS340 LEU341 PRO342 SER343 LEU344 ASP345 ILE346 ARG347 ASP348 GLY349 ALA350 VAL351 GLU352 ARG353 LEU354 THR355 GLU356 ILE357 TRP358 ARG359 ALA360 SER361 LEU362 PRO363 HIS364 MSE365 GLY366 GLY367 TYR368 LEU369 THR370 LEU371 ASP372 GLY373 SER374 VAL375 ASN376 LEU377 ALA378 ARG379 ALA380 GLU381 VAL382 ILE383 LEU384 SER385 ALA386 VAL387 GLY388 ASN389 GLN390 GLU391 ASP392 ASP393 ILE394 PHE395 LYS396 ARG397 LEU398 LYS399 GLN400 GLN401 GLU402 ASP403 ARG404 ARG405 ASN406 ASP582 THR583 VAL584 ARG585 LEU586 TYR587 GLU588 PRO589 GLY590 TYR591 ARG592 GLU593 ARG594 TYR595 TYR596 GLU597 GLN598 LYS599 PHE600 HIS601 ILE602 SER603 PRO604 ASP605 GLU606 PRO607 GLU608 LYS609 ILE610 ARG611 GLU612 ALA613 VAL614 LYS615 HIS616 TYR617 VAL618 HIS619 GLY620 LEU621 CYS622 TRP623 VAL624 LEU625 LEU626 TYR627 TYR628 TYR629 GLN630 GLY631 CYS632 PRO633 SER634 TRP635 THR636 TRP637 TYR638 TYR639 PRO640 TYR641 HIS642 TYR643 ALA644 PRO645 PHE646 ALA647 ALA648 ASP649 PHE650 LYS651 ASP652 LEU653 ALA654 SER655 ILE656 ASP657 VAL658 LYS659 PHE660 GLU661 LEU662 ASN663 GLN664 PRO665 PHE666 LYS667 PRO668 TYR669 GLU670 GLN671 LEU672 LEU673 GLY674 VAL675 LEU676 PRO677 ALA678 ALA679 SER680 LYS681 ASN682 ASN683 LEU684 PRO685 GLU686 LYS687 LEU688 GLN689 THR690 LEU691 MSE692 THR693 ASP694 GLU695 ASN696 SER697 GLU698 ILE699 ILE700 ASP701 PHE702 TYR703 PRO704 GLU705 ASN706 PHE707 THR708 ILE709 ASP710 LEU711 ASN712 GLY713 LYS714 LYS715 PHE716 GLU717 TRP718 GLN719 GLY720 VAL721 ALA722 LEU723 LEU724 PRO725 PHE726 ILE727 ASP728 GLU729 ASN730 ARG731 LEU732 LEU733 ASN734 ALA735 VAL736 SER737 LYS738 ILE739 TYR740 PRO741 GLN742 LEU743 THR744 GLU745 GLU746 GLU747 SER748 LYS749 ARG750 ASN751 GLU752 ASP753 GLY754 SER755 THR756 LEU757 LEU758 PHE759 ILE760 SER761 GLU762 HIS763 HIS764 PRO765 MSE766 PHE767 SER768 GLU769 LEU770 VAL771 LYS772 GLN773 LEU774 TYR775 SER776 LYS777 LYS778 ARG779 GLN780 GLY781 LYS782 PRO783 LEU784 LYS785 LEU786 SER787 GLY788 LYS789 MSE790 ALA791 HIS792 GLY793 LEU794 PHE795 GLY796 LYS797 VAL798 ASN799 THR800 ASN801 ASP802 SER803 VAL804 ILE805 PRO806 ASN807 VAL808 SER809 VAL810 GLN811 CYS812 PRO813 ILE814 ASP815 VAL816 THR817 SER818 ALA819 ASP820 ALA821 LEU822 GLN823 LYS824 TYR825 GLY826 SER827 ILE828 ASP829 ASP830 ASN831 GLN832 SER833 ILE834 SER835 LEU836 VAL837 PHE838 GLU839 VAL840 PRO841 LYS842 SER843 HIS844 PHE845 VAL846 HIS847 LYS848 SER849 MSE850 LEU851 LEU852 ARG853 GLY854 VAL855 LYS856 MSE857 PRO858 ASN859 ARG860 VAL861 LEU862 THR863 PRO864 GLU865 ASP866 ILE867 ASN868 GLN869 VAL870 ARG871 ALA872 GLU873 ARG874
Unit 2 MSE1 LEU2 ARG3 GLU4 PHE5 SER6 PHE7 TYR8 ASP9 VAL10 PRO11 PRO12 ALA13 HIS14 VAL15 PRO16 PRO17 VAL18 SER19 GLU20 PRO21 LEU22 GLU23 ILE24 ALA25 CYS26 TYR27 SER28 LEU29 SER30 ARG31 ASP32 ARG33 GLU34 LEU35 LEU36 LEU37 ASP38 ASP39 SER40 LYS41 LEU42 SER43 TYR44 TYR45 TYR46 PRO47 PRO48 PRO49 LEU50 PHE51 SER52 ASP53 LEU54 ASN55 THR56 GLY57 PHE58 PRO59 ASN60 ARG61 PHE62 HIS63 PRO64 PRO65 LYS66 SER67 ASP68 PRO69 ASP70 PRO71 ILE72 SER73 ILE74 VAL75 LYS76 ASP77 VAL78 LEU79 MSE80 THR81 LYS82 GLY83 ILE84 GLN85 MSE86 ASN87 SER88 SER89 PHE90 LEU91 THR92 TRP93 ARG94 GLY95 LEU96 ILE97 THR98 LYS99 ILE100 MSE101 CYS102 ALA103 PRO104 LEU105 ASP106 PRO107 ARG108 ASN109 HIS110 TRP111 GLU112 THR113 TYR114 LEU115 VAL116 MSE117 ASP118 PRO119 THR120 SER121 GLY122 ILE123 ILE124 MSE125 MSE126 GLU127 GLU128 ARG129 THR130 ARG131 SER132 GLU133 THR134 SER135 TYR136 ALA137 ASN138 GLN139 ASP140 ARG141 MSE142 CYS143 TYR144 TRP145 GLY146 TYR147 LYS148 PHE149 GLU150 ALA151 ILE152 SER153 THR154 LEU155 PRO156 GLU157 ILE158 TRP159 ASP160 ALA161 CYS162 SER163 ARG164 ASP165 GLN166 ILE167 GLU168 GLN169 ARG170 ASP171 ASN172 GLN173 ASP174 VAL175 VAL176 PRO177 ASP178 GLU179 GLN180 TYR181 CYS182 SER183 ILE184 VAL185 LYS186 ILE187 ASN188 ILE189 GLY190 LYS191 SER192 LYS193 LEU194 ILE195 LEU196 ALA197 GLY198 GLU199 VAL200 ASP201 CYS202 ILE203 TRP204 ASP205 LYS206 LYS207 PRO208 CYS209 SER210 GLU231 ASN232 PRO233 ASN234 LEU235 HIS236 TYR237 VAL238 GLU239 LEU240 LYS241 THR242 SER243 LYS244 LYS245 TYR246 PRO247 LEU248 GLU249 ASN250 TYR251 GLY252 MSE253 ARG254 LYS255 LYS256 LEU257 LEU258 LYS259 TYR260 TRP261 ALA262 GLN263 SER264 PHE265 LEU266 LEU267 GLY268 ILE269 GLY270 ARG271 ILE272 ILE273 ILE274 GLY275 PHE276 ARG277 ASP278 ASP279 ASN280 GLY281 ILE282 LEU283 ILE284 GLU285 MSE286 LYS287 GLU288 LEU289 PHE290 THR291 HIS292 GLN293 ILE294 PRO295 LYS296 MSE297 LEU298 ARG299 PRO300 TYR301 PHE302 LYS303 PRO304 ASN305 ASP306 TRP307 THR308 PRO309 ASN310 ARG311 LEU312 LEU313 VAL314 VAL315 LEU316 GLU317 HIS318 ALA319 LEU320 GLU321 TRP322 ILE323 LYS324 GLN325 THR326 VAL327 LYS328 GLN329 HIS330 PRO331 PRO332 SER333 THR334 GLU335 PHE336 THR337 LEU338 SER339 TYR340 THR341 GLY342 GLY343 SER344 LYS345 LEU346 VAL347 LEU348 ARG349 GLN350 ILE351 ILE352

Ligands
Unit 3 MG1000 GOL1001

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany