3FKB - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF NDPK H122G AND TENOFOVIR-DIPHOSPHATE
• Keywords: AN HEXAMER STRUCTURE, ATP-BINDING, KINASE, MAGNESIUM, METAL- NUCLEOTIDE METABOLISM, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3FKB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	A	150	1140	0
2	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	B	150	1140	0
3	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	C	150	1140	0
4	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	D	149	1133	0
5	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	E	149	1133	0
6	Protein	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	F	150	1140	0
7	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	A	3	0	28
8	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	B	3	0	28
9	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	C	3	0	30
10	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	D	4	0	38
11	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	E	2	0	24
12	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC	F	4	0	32
13	Water			1278	0	1278
total				2195	6826	1458

Proteins

Unit 1	VAL 6 ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155
Unit 2	VAL 6 ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155
Unit 3	VAL 6 ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155
Unit 4	ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155
Unit 5	ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155
Unit 6	VAL 6 ASN 7 LYS 8 GLU 9 ARG 10 THR 11 PHE 12 LEU 13 ALA 14 VAL 15 LYS 16 PRO 17 ASP 18 GLY 19 VAL 20 ALA 21 ARG 22 GLY 23 LEU 24 VAL 25 GLY 26 GLU 27 ILE 28 ILE 29 ALA 30 ARG 31 TYR 32 GLU 33 LYS 34 LYS 35 GLY 36 PHE 37 VAL 38 LEU 39 VAL 40 GLY 41 LEU 42 LYS 43 GLN 44 LEU 45 VAL 46 PRO 47 THR 48 LYS 49 ASP 50 LEU 51 ALA 52 GLU 53 SER 54 HIS 55 TYR 56 ALA 57 GLU 58 HIS 59 LYS 60 GLU 61 ARG 62 PRO 63 PHE 64 PHE 65 GLY 66 GLY 67 LEU 68 VAL 69 SER 70 PHE 71 ILE 72 THR 73 SER 74 GLY 75 PRO 76 VAL 77 VAL 78 ALA 79 MET 80 VAL 81 PHE 82 GLU 83 GLY 84 LYS 85 GLY 86 VAL 87 VAL 88 ALA 89 SER 90 ALA 91 ARG 92 LEU 93 MET 94 ILE 95 GLY 96 VAL 97 THR 98 ASN 99 PRO 100 LEU 101 ALA 102 SER 103 ALA 104 PRO 105 GLY 106 SER 107 ILE 108 ARG 109 GLY 110 ASP 111 PHE 112 GLY 113 VAL 114 ASP 115 VAL 116 GLY 117 ARG 118 ASN 119 ILE 120 ILE 121 GLY 122 GLY 123 SER 124 ASP 125 SER 126 VAL 127 GLU 128 SER 129 ALA 130 ASN 131 ARG 132 GLU 133 ILE 134 ALA 135 LEU 136 TRP 137 PHE 138 LYS 139 PRO 140 GLU 141 GLU 142 LEU 143 LEU 144 THR 145 GLU 146 VAL 147 LYS 148 PRO 149 ASN 150 PRO 151 ASN 152 LEU 153 TYR 154 GLU 155

Ligands

Unit 7	MG 156 EDO 157 TNM 160
Unit 8	MG 156 EDO 157 TNM 160
Unit 9	MG 156 GOL 157 TNM 160
Unit 10	MG 156 GOL 157 EDO 158 TNV 160
Unit 11	MG 156 TNM 160
Unit 12	MG 156 EDO 157 EDO 158 TNM 160