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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL INSIGHT INTO RECRUITMENT OF TRANSLESION DNA POLYM TO SLIDING CLAMP PCNA
Keywords PROTEIN-PROTEIN COMPLEX, DNA DAMAGE, DNA REPAIR, DNA REPLICA DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL- MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3FDS     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE IV  A 352 2815 0
2  Protein   DNA POLYMERASE SLIDING CLAMP B  C 249 1928 0
3  Protein   DNA POLYMERASE SLIDING CLAMP C  D 241 1907 0
4  Ligand   DNA POLYMERASE IV  A 19 0 93
5  Ligand   DNA POLYMERASE SLIDING CLAMP B  C 12 0 55
6  Ligand   DNA POLYMERASE SLIDING CLAMP C  D 2 0 14
7 Water     317 0 317
total       1192 6650 479

Proteins
Unit 1 MET1 ILE2 VAL3 LEU4 PHE5 VAL6 ASP7 PHE8 ASP9 TYR10 PHE11 TYR12 ALA13 GLN14 VAL15 GLU16 GLU17 VAL18 LEU19 ASN20 PRO21 SER22 LEU23 LYS24 GLY25 LYS26 PRO27 VAL28 VAL29 VAL30 CYS31 VAL32 PHE33 SER34 GLY35 ARG36 PHE37 GLU38 ASP39 SER40 GLY41 ALA42 VAL43 ALA44 THR45 ALA46 ASN47 TYR48 GLU49 ALA50 ARG51 LYS52 PHE53 GLY54 VAL55 LYS56 ALA57 GLY58 ILE59 PRO60 ILE61 VAL62 GLU63 ALA64 LYS65 LYS66 ILE67 LEU68 PRO69 ASN70 ALA71 VAL72 TYR73 LEU74 PRO75 MET76 ARG77 LYS78 GLU79 VAL80 TYR81 GLN82 GLN83 VAL84 SER85 SER86 ARG87 ILE88 MET89 ASN90 LEU91 LEU92 ARG93 GLU94 TYR95 SER96 GLU97 LYS98 ILE99 GLU100 ILE101 ALA102 SER103 ILE104 ASP105 GLU106 ALA107 TYR108 LEU109 ASP110 ILE111 SER112 ASP113 LYS114 VAL115 ARG116 ASP117 TYR118 ARG119 GLU120 ALA121 TYR122 ASN123 LEU124 GLY125 LEU126 GLU127 ILE128 LYS129 ASN130 LYS131 ILE132 LEU133 GLU134 LYS135 GLU136 LYS137 ILE138 THR139 VAL140 THR141 VAL142 GLY143 ILE144 SER145 LYS146 ASN147 LYS148 VAL149 PHE150 ALA151 LYS152 ILE153 ALA154 ALA155 ASP156 MET157 ALA158 LYS159 PRO160 ASN161 GLY162 ILE163 LYS164 VAL165 ILE166 ASP167 ASP168 GLU169 GLU170 VAL171 LYS172 ARG173 LEU174 ILE175 ARG176 GLU177 LEU178 ASP179 ILE180 ALA181 ASP182 VAL183 PRO184 GLY185 ILE186 GLY187 ASN188 ILE189 THR190 ALA191 GLU192 LYS193 LEU194 LYS195 LYS196 LEU197 GLY198 ILE199 ASN200 LYS201 LEU202 VAL203 ASP204 THR205 LEU206 SER207 ILE208 GLU209 PHE210 ASP211 LYS212 LEU213 LYS214 GLY215 MET216 ILE217 GLY218 GLU219 ALA220 LYS221 ALA222 LYS223 TYR224 LEU225 ILE226 SER227 LEU228 ALA229 ARG230 ASP231 GLU232 TYR233 ASN234 GLU235 PRO236 ILE237 ARG238 THR239 ARG240 VAL241 ARG242 LYS243 SER244 ILE245 GLY246 ARG247 ILE248 VAL249 THR250 MET251 LYS252 ARG253 ASN254 SER255 ARG256 ASN257 LEU258 GLU259 GLU260 ILE261 LYS262 PRO263 TYR264 LEU265 PHE266 ARG267 ALA268 ILE269 GLU270 GLU271 SER272 TYR273 TYR274 LYS275 LEU276 ASP277 LYS278 ARG279 ILE280 PRO281 LYS282 ALA283 ILE284 HIS285 VAL286 VAL287 ALA288 VAL289 THR290 GLU291 ASP292 LEU293 ASP294 ILE295 VAL296 SER297 ARG298 GLY299 ARG300 THR301 PHE302 PRO303 HIS304 GLY305 ILE306 SER307 LYS308 GLU309 THR310 ALA311 TYR312 SER313 GLU314 SER315 VAL316 LYS317 LEU318 LEU319 GLN320 LYS321 ILE322 LEU323 GLU324 GLU325 ASP326 GLU327 ARG328 LYS329 ILE330 ARG331 ARG332 ILE333 GLY334 VAL335 ARG336 PHE337 SER338 LYS339 PHE340 ILE341 GLU342 ALA343 ILE344 GLY345 LEU346 ASP347 LYS348 PHE349 PHE350 ASP351 THR352
Unit 2 MET1 VAL2 LYS3 ILE4 VAL5 TYR6 PRO7 ASN8 ALA9 LYS10 ASP11 PHE12 PHE13 SER14 PHE15 ILE16 ASN17 SER18 ILE19 THR20 ASN21 VAL22 THR23 ASP24 SER25 ILE26 ILE27 LEU28 ASN29 PHE30 THR31 GLU32 ASP33 GLY34 ILE35 PHE36 SER37 ARG38 HIS39 LEU40 THR41 GLU42 ASP43 LYS44 VAL45 LEU46 MET47 ALA48 ILE49 MET50 ARG51 ILE52 PRO53 LYS54 ASP55 VAL56 LEU57 SER58 GLU59 TYR60 SER61 ILE62 ASP63 SER64 PRO65 THR66 SER67 VAL68 LYS69 LEU70 ASP71 VAL72 SER73 SER74 VAL75 LYS76 LYS77 ILE78 LEU79 SER80 LYS81 ALA82 SER83 SER84 LYS85 LYS86 ALA87 THR88 ILE89 GLU90 LEU91 THR92 GLU93 THR94 ASP95 SER96 GLY97 LEU98 LYS99 ILE100 ILE101 ILE102 ARG103 ASP104 GLU105 LYS106 SER107 GLY108 ALA109 LYS110 SER111 THR112 ILE113 TYR114 ILE115 LYS116 ALA117 GLU118 LYS119 GLY120 GLN121 VAL122 GLU123 GLN124 LEU125 THR126 GLU127 PRO128 LYS129 VAL130 ASN131 LEU132 ALA133 VAL134 ASN135 PHE136 THR137 THR138 ASP139 GLU140 SER141 VAL142 LEU143 ASN144 VAL145 ILE146 ALA147 ALA148 ASP149 VAL150 THR151 LEU152 VAL153 GLY154 GLU155 GLU156 MET157 ARG158 ILE159 SER160 THR161 GLU162 GLU163 ASP164 LYS165 ILE166 LYS167 ILE168 GLU169 ALA170 GLY171 GLU172 GLU173 GLY174 LYS175 ARG176 TYR177 VAL178 ALA179 PHE180 LEU181 MET182 LYS183 ASP184 LYS185 PRO186 LEU187 LYS188 GLU189 LEU190 SER191 ILE192 ASP193 THR194 SER195 ALA196 SER197 SER198 SER199 TYR200 SER201 ALA202 GLU203 MET204 PHE205 LYS206 ASP207 ALA208 VAL209 LYS210 GLY211 LEU212 ARG213 GLY214 PHE215 SER216 ALA217 PRO218 THR219 MET220 VAL221 SER222 PHE223 GLY224 GLU225 ASN226 LEU227 PRO228 MET229 LYS230 ILE231 ASP232 VAL233 GLU234 ALA235 VAL236 SER237 GLY238 GLY239 HIS240 MET241 ILE242 PHE243 TRP244 ILE245 ALA246 PRO247 ARG248 LEU249
Unit 3 MET1 MET2 LYS3 ALA4 LYS5 VAL6 ILE7 ASP8 ALA9 VAL10 SER11 PHE12 SER13 TYR14 ILE15 LEU16 ARG17 THR18 VAL19 GLY20 ASP21 PHE22 LEU23 SER24 GLU25 ALA26 ASN27 PHE28 ILE29 VAL30 THR31 LYS32 GLU33 GLY34 ILE35 ARG36 VAL37 SER38 GLY39 ILE40 ASP41 PRO42 SER43 ARG44 VAL45 VAL46 PHE47 LEU48 ASP49 ILE50 PHE51 LEU52 PRO53 SER54 SER55 TYR56 PHE57 GLU58 GLY59 PHE60 GLU61 VAL62 SER63 GLN64 GLU65 LYS66 GLU67 ILE68 ILE69 GLY70 PHE71 LYS72 LEU73 GLU74 ASP75 VAL76 ASN77 ASP78 ILE79 LEU80 LYS81 ARG82 VAL83 LEU84 LYS85 ASP86 ASP87 THR88 LEU89 ILE90 LEU91 SER92 SER93 ASN94 GLU95 SER96 LYS97 LEU98 THR99 LEU100 THR101 PHE102 ASP103 GLY104 GLU105 PHE106 THR107 ARG108 SER109 PHE110 GLU111 LEU112 PRO113 LEU114 ILE115 GLN116 VAL117 GLU118 SER119 THR120 GLN121 PRO122 LEU127 GLU128 PHE129 PRO130 PHE131 LYS132 ALA133 GLN134 LEU135 LEU136 THR137 ILE138 THR139 PHE140 ALA141 ASP142 ILE143 ILE144 ASP145 GLU146 LEU147 SER148 ASP149 LEU150 GLY151 GLU152 VAL153 LEU154 ASN155 ILE156 HIS157 SER158 LYS159 GLU160 ASN161 LYS162 LEU163 TYR164 PHE165 GLU166 VAL167 ILE168 GLY169 ASP170 LEU171 SER172 THR173 ALA174 LYS175 VAL176 GLU177 LEU178 SER179 THR180 ASP181 ASN182 GLY183 THR184 LEU185 LEU186 GLU187 ALA188 SER189 GLY190 ALA191 ASP192 VAL193 SER194 SER195 SER196 TYR197 GLY198 MET199 GLU200 TYR201 VAL202 ALA203 ASN204 THR205 THR206 LYS207 MET208 ARG209 ARG210 ALA211 SER212 ASP213 SER214 MET215 GLU216 LEU217 TYR218 PHE219 GLY220 SER221 GLN222 ILE223 PRO224 LEU225 LYS226 LEU227 ARG228 PHE229 LYS230 LEU231 PRO232 GLN233 GLU234 GLY235 TYR236 GLY237 ASP238 PHE239 TYR240 ILE241 ALA242 PRO243 ARG244 ALA245

Ligands
Unit 4 EDO353 EDO354 EDO355 EDO356 EDO357 EDO358 EDO359 EDO360 EDO361 EDO362 EDO363 EDO364 EDO365 EDO366 EDO367 EDO368 PEG369 1PE370 GOL371
Unit 5 EDO250 EDO251 EDO252 EDO253 EDO254 EDO255 EDO256 EDO257 EDO258 PEG259 GOL260 GOL261
Unit 6 EDO246 PGE247

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany