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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE MIMIVIRUS NDK R107G MUTANT COMPLEXE DTDP
Keywords PHOSPHOTRANSFERASE NUCLEOTIDE BINDING, ATP-BINDING, KINASE, MAGNESIUM, METAL-BINDING, NUCLEOTIDE METABOLISM, NUCLEOTIDE PHOSPHOPROTEIN, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3EVW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  A 133 1058 0
2  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  B 130 1042 0
3  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  C 132 1053 0
4  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  D 132 1053 0
5  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  E 132 1053 0
6  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  F 130 1037 0
7  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  A 2 0 26
8  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  B 2 0 26
9  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  C 2 0 26
10  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  D 2 0 26
11  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  E 2 0 26
12  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  F 2 0 26
13 Water     33 0 33
total       834 6296 189
Proteins
Unit 1 ALA-1 GLY0 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129 GLU130 THR131
Unit 2 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129 GLU130
Unit 3 GLY0 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129 GLU130 THR131
Unit 4 GLY0 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129 GLU130 THR131
Unit 5 GLY0 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129 GLU130 THR131
Unit 6 GLY0 LEU1 GLN2 ARG3 THR4 LEU5 VAL6 LEU7 ILE8 LYS9 PRO10 ASP11 ALA12 PHE13 GLU14 ARG15 SER16 LEU17 VAL18 ALA19 GLU20 ILE21 MET22 GLY23 ARG24 ILE25 GLU26 LYS27 LYS28 ASN29 PHE30 LYS31 ILE32 VAL33 SER34 MET35 LYS36 PHE37 TRP38 SER39 LYS40 ALA41 PRO42 ARG43 ASN44 LEU45 ILE46 GLU47 GLN48 HIS49 TYR50 LYS51 GLU52 HIS53 SER54 GLU55 GLN56 SER57 TYR58 PHE59 ASN60 ASP61 ASN62 CYS63 ASP64 PHE65 MET66 VAL67 SER68 GLY69 PRO70 ILE71 ILE72 SER73 ILE74 VAL75 TYR76 GLU77 GLY78 THR79 ASP80 ALA81 ILE82 SER83 LYS84 ILE85 ARG86 ARG87 LEU88 GLN89 GLY90 ASN91 ILE92 LEU93 THR94 PRO95 GLY96 THR97 ILE98 ARG99 GLY100 ASP101 LEU102 ALA103 ASN104 ASP105 ILE106 GLY107 GLU108 ASN109 LEU110 ILE111 HIS112 ALA113 SER114 ASP115 SER116 GLU117 ASP118 SER119 ALA120 VAL121 ASP122 GLU123 ILE124 SER125 ILE126 TRP127 PHE128 PRO129
Ligands
Unit 7 TYD138 MG160
Unit 8 TYD138 MG161
Unit 9 TYD138 MG162
Unit 10 TYD138 MG163
Unit 11 TYD138 MG164
Unit 12 TYD138 MG165
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany