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Sequence, Chains, Asymmetric and Biological Units

Title MICROTUBULE BINDING DOMAIN FROM MOUSE CYTOPLASMIC DYNEIN AS WITH SERYL-TRNA SYNTHETASE
Keywords DYNEIN, MICROTUBULE BINDING DOMAIN, COILED COIL, FUSION PROT LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3ERR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FUSION PROTEIN OF MICROTUBULE BINDING DOMAIN FROM CYTOPLASMIC DYNEIN AND SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS  A 527 4210 0
2  Protein   FUSION PROTEIN OF MICROTUBULE BINDING DOMAIN FROM CYTOPLASMIC DYNEIN AND SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS  B 527 4210 0
3  Ligand   FUSION PROTEIN OF MICROTUBULE BINDING DOMAIN FROM CYTOPLASMIC DYNEIN AND SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS  A 1 0 23
4  Ligand   FUSION PROTEIN OF MICROTUBULE BINDING DOMAIN FROM CYTOPLASMIC DYNEIN AND SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS  B 1 0 23
5 Water     123 0 123
total       1179 8420 169

Proteins
Unit 1 ASP3 LEU4 LYS5 ARG6 LEU7 ARG8 GLN9 GLU10 PRO11 GLU12 VAL13 PHE14 HIS15 ARG16 ALA17 ILE18 ARG19 GLU20 LYS21 GLY22 VAL23 ALA24 LEU25 ASP26 LEU27 GLU28 ALA29 LEU30 LEU31 ALA32 VAL33 ASP34 LEU94 GLU95 ALA96 LEU97 LEU98 LEU99 GLN100 VAL101 PRO102 LEU103 PRO104 PRO105 TRP106 PRO107 GLY108 ALA109 PRO110 VAL111 GLY112 GLY113 GLU114 GLU115 ALA116 ASN117 ARG118 GLU119 ILE120 LYS121 ARG122 VAL123 GLY124 GLY125 PRO126 PRO127 GLU128 PHE129 SER130 PHE131 PRO132 PRO133 LEU134 ASP135 HIS136 VAL137 ALA138 LEU139 MET140 GLU141 LYS142 ASN143 GLY144 TRP145 TRP146 GLU147 PRO148 ARG149 ILE150 SER151 GLN152 VAL153 SER154 GLY155 SER156 ARG157 SER158 TYR159 ALA160 LEU161 LYS162 GLY163 ASP164 LEU165 ALA166 LEU167 TYR168 GLU169 LEU170 ALA171 LEU172 LEU173 ARG174 PHE175 ALA176 MET177 ASP178 PHE179 MET180 ALA181 ARG182 ARG183 GLY184 PHE185 LEU186 PRO187 MET188 THR189 LEU190 PRO191 SER192 TYR193 ALA194 ARG195 GLU196 LYS197 ALA198 PHE199 LEU200 GLY201 THR202 GLY203 HIS204 PHE205 PRO206 ALA207 TYR208 ARG209 ASP210 GLN211 VAL212 TRP213 ALA214 ILE215 ALA216 GLU217 THR218 ASP219 LEU220 TYR221 LEU222 THR223 GLY224 THR225 ALA226 GLU227 VAL228 VAL229 LEU230 ASN231 ALA232 LEU233 HIS234 SER235 GLY236 GLU237 ILE238 LEU239 PRO240 TYR241 GLU242 ALA243 LEU244 PRO245 LEU246 ARG247 TYR248 ALA249 GLY250 TYR251 ALA252 PRO253 ALA254 PHE255 ARG256 SER257 GLU258 ALA259 GLY260 SER261 PHE262 GLY263 LYS264 ASP265 VAL266 ARG267 GLY268 LEU269 MET270 ARG271 VAL272 HIS273 GLN274 PHE275 HIS276 LYS277 VAL278 GLU279 GLN280 TYR281 VAL282 LEU283 THR284 GLU285 ALA286 SER287 LEU288 GLU289 ALA290 SER291 ASP292 ARG293 ALA294 PHE295 GLN296 GLU297 LEU298 LEU299 GLU300 ASN301 ALA302 GLU303 GLU304 ILE305 LEU306 ARG307 LEU308 LEU309 GLU310 LEU311 PRO312 TYR313 ARG314 LEU315 VAL316 GLU317 VAL318 ALA319 THR320 GLY321 ASP322 MET323 GLY324 PRO325 GLY326 LYS327 TRP328 ARG329 GLN330 VAL331 ASP332 ILE333 GLU334 VAL335 TYR336 LEU337 PRO338 SER339 GLU340 GLY341 ARG342 TYR343 ARG344 GLU345 THR346 HIS347 SER348 CYS349 SER350 ALA351 LEU352 LEU353 ASP354 TRP355 GLN356 ALA357 ARG358 ARG359 ALA360 ASN361 LEU362 ARG363 TYR364 ARG365 ASP366 PRO367 GLU368 GLY369 ARG370 VAL371 ARG372 TYR373 ALA374 TYR375 THR376 LEU377 ASN378 ASN379 THR380 ALA381 LEU382 ALA383 THR384 PRO385 ARG386 ILE387 LEU388 ALA389 MET390 LEU391 LEU392 GLU393 ASN394 HIS395 GLN396 LEU397 GLN398 ASP399 GLY400 ARG401 VAL402 ARG403 VAL404 PRO405 GLN406 ALA407 LEU408 ILE409 PRO410 TYR411 MET412 GLY413 LYS414 GLU415 VAL416 LEU417 GLU418 PRO419 GLY420 GLU3260 GLN3261 LEU3262 HIS3263 LYS3264 GLN3265 GLN3266 GLU3267 VAL3268 ILE3269 ALA3270 ASP3271 LYS3272 GLN3273 MET3274 SER3275 VAL3276 LYS3277 GLU3278 ASP3279 LEU3280 ASP3281 LYS3282 VAL3283 GLU3284 PRO3285 ALA3286 VAL3287 ILE3288 GLU3289 ALA3290 GLN3291 ASN3292 ALA3293 VAL3294 LYS3295 SER3296 ILE3297 LYS3298 LYS3299 GLN3300 HIS3301 LEU3302 VAL3303 GLU3304 VAL3305 ARG3306 SER3307 MET3308 ALA3309 ASN3310 PRO3311 PRO3312 ALA3313 ALA3314 VAL3315 LYS3316 LEU3317 ALA3318 LEU3319 GLU3320 SER3321 ILE3322 ALA3323 LEU3324 LEU3325 LEU3326 GLY3327 GLU3328 SER3329 THR3330 THR3331 ASP3332 TRP3333 LYS3334 GLN3335 ILE3336 ARG3337 SER3338 ILE3339 ILE3340 MET3341 ARG3342 GLU3343 ASN3344 PHE3345 ILE3346 PRO3347 THR3348 ILE3349 VAL3350 ASN3351 PHE3352 SER3353 ALA3354 GLU3355 GLU3356 ILE3357 SER3358 ASP3359 ALA3360 ILE3361 ARG3362 GLU3363 LYS3364 MET3365 LYS3366 LYS3367 ASN3368 TYR3369 MET3370 SER3371 ASN3372 PRO3373 SER3374 TYR3375 ASN3376 TYR3377 GLU3378 ILE3379 VAL3380 ASN3381 ARG3382 ALA3383 SER3384 LEU3385 ALA3386 ALA3387 GLY3388 PRO3389 MET3390 VAL3391 LYS3392 TRP3393 ALA3394 ILE3395 ALA3396 GLN3397 LEU3398 ASN3399 TYR3400 ALA3401 ASP3402 MET3403 LEU3404 LYS3405 ARG3406 VAL3407 GLU3408 PRO3409 LEU3410 ARG3411 ASN3412 GLU3413 LEU3414 GLN3415 LYS3416 LEU3417 GLU3418 ASP3419 ASP3420 ALA3421 LYS3422 ASP3423 ASN3424 GLN3425 GLN3426 LYS3427
Unit 2 ASP3 LEU4 LYS5 ARG6 LEU7 ARG8 GLN9 GLU10 PRO11 GLU12 VAL13 PHE14 HIS15 ARG16 ALA17 ILE18 ARG19 GLU20 LYS21 GLY22 VAL23 ALA24 LEU25 ASP26 LEU27 GLU28 ALA29 LEU30 LEU31 ALA32 VAL33 ASP34 LEU94 GLU95 ALA96 LEU97 LEU98 LEU99 GLN100 VAL101 PRO102 LEU103 PRO104 PRO105 TRP106 PRO107 GLY108 ALA109 PRO110 VAL111 GLY112 GLY113 GLU114 GLU115 ALA116 ASN117 ARG118 GLU119 ILE120 LYS121 ARG122 VAL123 GLY124 GLY125 PRO126 PRO127 GLU128 PHE129 SER130 PHE131 PRO132 PRO133 LEU134 ASP135 HIS136 VAL137 ALA138 LEU139 MET140 GLU141 LYS142 ASN143 GLY144 TRP145 TRP146 GLU147 PRO148 ARG149 ILE150 SER151 GLN152 VAL153 SER154 GLY155 SER156 ARG157 SER158 TYR159 ALA160 LEU161 LYS162 GLY163 ASP164 LEU165 ALA166 LEU167 TYR168 GLU169 LEU170 ALA171 LEU172 LEU173 ARG174 PHE175 ALA176 MET177 ASP178 PHE179 MET180 ALA181 ARG182 ARG183 GLY184 PHE185 LEU186 PRO187 MET188 THR189 LEU190 PRO191 SER192 TYR193 ALA194 ARG195 GLU196 LYS197 ALA198 PHE199 LEU200 GLY201 THR202 GLY203 HIS204 PHE205 PRO206 ALA207 TYR208 ARG209 ASP210 GLN211 VAL212 TRP213 ALA214 ILE215 ALA216 GLU217 THR218 ASP219 LEU220 TYR221 LEU222 THR223 GLY224 THR225 ALA226 GLU227 VAL228 VAL229 LEU230 ASN231 ALA232 LEU233 HIS234 SER235 GLY236 GLU237 ILE238 LEU239 PRO240 TYR241 GLU242 ALA243 LEU244 PRO245 LEU246 ARG247 TYR248 ALA249 GLY250 TYR251 ALA252 PRO253 ALA254 PHE255 ARG256 SER257 GLU258 ALA259 GLY260 SER261 PHE262 GLY263 LYS264 ASP265 VAL266 ARG267 GLY268 LEU269 MET270 ARG271 VAL272 HIS273 GLN274 PHE275 HIS276 LYS277 VAL278 GLU279 GLN280 TYR281 VAL282 LEU283 THR284 GLU285 ALA286 SER287 LEU288 GLU289 ALA290 SER291 ASP292 ARG293 ALA294 PHE295 GLN296 GLU297 LEU298 LEU299 GLU300 ASN301 ALA302 GLU303 GLU304 ILE305 LEU306 ARG307 LEU308 LEU309 GLU310 LEU311 PRO312 TYR313 ARG314 LEU315 VAL316 GLU317 VAL318 ALA319 THR320 GLY321 ASP322 MET323 GLY324 PRO325 GLY326 LYS327 TRP328 ARG329 GLN330 VAL331 ASP332 ILE333 GLU334 VAL335 TYR336 LEU337 PRO338 SER339 GLU340 GLY341 ARG342 TYR343 ARG344 GLU345 THR346 HIS347 SER348 CYS349 SER350 ALA351 LEU352 LEU353 ASP354 TRP355 GLN356 ALA357 ARG358 ARG359 ALA360 ASN361 LEU362 ARG363 TYR364 ARG365 ASP366 PRO367 GLU368 GLY369 ARG370 VAL371 ARG372 TYR373 ALA374 TYR375 THR376 LEU377 ASN378 ASN379 THR380 ALA381 LEU382 ALA383 THR384 PRO385 ARG386 ILE387 LEU388 ALA389 MET390 LEU391 LEU392 GLU393 ASN394 HIS395 GLN396 LEU397 GLN398 ASP399 GLY400 ARG401 VAL402 ARG403 VAL404 PRO405 GLN406 ALA407 LEU408 ILE409 PRO410 TYR411 MET412 GLY413 LYS414 GLU415 VAL416 LEU417 GLU418 PRO419 GLY420 GLU3260 GLN3261 LEU3262 HIS3263 LYS3264 GLN3265 GLN3266 GLU3267 VAL3268 ILE3269 ALA3270 ASP3271 LYS3272 GLN3273 MET3274 SER3275 VAL3276 LYS3277 GLU3278 ASP3279 LEU3280 ASP3281 LYS3282 VAL3283 GLU3284 PRO3285 ALA3286 VAL3287 ILE3288 GLU3289 ALA3290 GLN3291 ASN3292 ALA3293 VAL3294 LYS3295 SER3296 ILE3297 LYS3298 LYS3299 GLN3300 HIS3301 LEU3302 VAL3303 GLU3304 VAL3305 ARG3306 SER3307 MET3308 ALA3309 ASN3310 PRO3311 PRO3312 ALA3313 ALA3314 VAL3315 LYS3316 LEU3317 ALA3318 LEU3319 GLU3320 SER3321 ILE3322 ALA3323 LEU3324 LEU3325 LEU3326 GLY3327 GLU3328 SER3329 THR3330 THR3331 ASP3332 TRP3333 LYS3334 GLN3335 ILE3336 ARG3337 SER3338 ILE3339 ILE3340 MET3341 ARG3342 GLU3343 ASN3344 PHE3345 ILE3346 PRO3347 THR3348 ILE3349 VAL3350 ASN3351 PHE3352 SER3353 ALA3354 GLU3355 GLU3356 ILE3357 SER3358 ASP3359 ALA3360 ILE3361 ARG3362 GLU3363 LYS3364 MET3365 LYS3366 LYS3367 ASN3368 TYR3369 MET3370 SER3371 ASN3372 PRO3373 SER3374 TYR3375 ASN3376 TYR3377 GLU3378 ILE3379 VAL3380 ASN3381 ARG3382 ALA3383 SER3384 LEU3385 ALA3386 ALA3387 GLY3388 PRO3389 MET3390 VAL3391 LYS3392 TRP3393 ALA3394 ILE3395 ALA3396 GLN3397 LEU3398 ASN3399 TYR3400 ALA3401 ASP3402 MET3403 LEU3404 LYS3405 ARG3406 VAL3407 GLU3408 PRO3409 LEU3410 ARG3411 ASN3412 GLU3413 LEU3414 GLN3415 LYS3416 LEU3417 GLU3418 ASP3419 ASP3420 ALA3421 LYS3422 ASP3423 ASN3424 GLN3425 GLN3426 LYS3427

Ligands
Unit 3 AMP1507
Unit 4 AMP1508

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany