Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HETERODIMERIC VACCINIA VIRUS MRNA POLYADENYLATE POLYMERASE COMPLEX WITH UU AND 3'-DEOXY ATP
Keywords POLYADENYLATE POLYMERASE, TRANSLOCATION, SINGLE TRANDED RNA POLYMERASE, RNA PROTEIN COMPLEX, PROCESSIVITY, HETERODIMER, NUCLEOTIDYLTRANSFERASE, POXVIRUS; METHYLTRANSFERASE, MRNA C MRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSCRIPTION, TRANSFERASE, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3ER9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 288 2382 0
2  Protein   POLY(A) POLYMERASE CATALYTIC SUBUNIT  B 445 3627 0
3  RNA    D 2 40 0
4  Ligand    A 3 0 18
5  Ligand   POLY(A) POLYMERASE CATALYTIC SUBUNIT  B 3 0 32
6 Water     317 0 317
total       1058 6049 367
Proteins
Unit 1 MET1 ASP2 VAL3 VAL4 SER5 LEU6 ASP7 LYS8 PRO9 PHE10 MET11 TYR12 PHE13 GLU14 GLU15 ILE16 ASP17 ASN18 GLU19 LEU20 ASP21 TYR22 GLU23 PRO24 GLU25 SER26 LYS33 LEU34 PRO35 TYR36 GLN37 GLY38 GLN39 LEU40 LYS41 LEU42 LEU43 LEU44 GLY45 GLU46 LEU47 PHE48 PHE49 LEU50 SER51 LYS52 LEU53 GLN54 ARG55 HIS56 GLY57 ILE58 LEU59 ASP60 GLY61 ALA62 THR63 VAL64 VAL65 TYR66 ILE67 GLY68 SER69 ALA70 PRO71 GLY72 THR73 HIS74 ILE75 ARG76 TYR77 LEU78 ARG79 ASP80 HIS81 PHE82 TYR83 ASN84 LEU85 GLY86 VAL87 ILE88 ILE89 LYS90 TRP91 MET92 LEU93 ILE94 ASP95 GLY96 ARG97 HIS98 HIS99 ASP100 PRO101 ILE102 LEU103 ASN104 GLY105 LEU106 ARG107 ASP108 VAL109 THR110 LEU111 VAL112 THR113 ARG114 PHE115 VAL116 ASP117 GLU118 GLU119 TYR120 LEU121 ARG122 SER123 ILE124 LYS125 LYS126 GLN127 LEU128 HIS129 PRO130 SER131 LYS132 ILE133 ILE134 LEU135 ILE136 SER137 ASP138 VAL139 ALA140 SER141 GLY145 ASN146 GLU147 PRO148 SER149 THR150 ALA151 ASP152 LEU153 LEU154 SER155 ASN156 TYR157 ALA158 LEU159 GLN160 ASN161 VAL162 MET163 ILE164 SER165 ILE166 LEU167 ASN168 PRO169 VAL170 ALA171 SER172 SER173 LEU174 LYS175 TRP176 ARG177 CYS178 PRO179 PHE180 PRO181 ASP182 GLN183 TRP184 ILE185 LYS186 ASP187 PHE188 TYR189 ILE190 PRO191 HIS192 GLY193 ASN194 LYS195 MET196 LEU197 GLN198 PRO199 PHE200 ALA201 PRO202 SER203 TYR204 SER205 ALA206 GLU207 MET208 ARG209 LEU210 LEU211 SER212 ILE213 TYR214 THR215 GLY216 GLU217 ASN218 MET219 ARG220 LEU221 THR222 ARG223 VAL224 THR225 LYS226 SER227 ASP228 ALA229 VAL230 ASN231 TYR232 GLU233 LYS234 LYS235 MET236 TYR237 TYR238 LEU239 ASN240 LYS241 ILE242 VAL243 ARG244 ASN245 LYS246 VAL247 VAL248 VAL249 ASN250 PHE251 ASP252 TYR253 PRO254 ASN255 GLN256 GLU257 TYR258 ASP259 TYR260 PHE261 HIS262 MET263 TYR264 PHE265 MET266 LEU267 ARG268 THR269 VAL270 TYR271 CYS272 ASN273 LYS274 THR275 PHE276 PRO277 THR278 THR279 LYS280 ALA281 LYS282 VAL283 LEU284 PHE285 LEU286 GLN287 GLN288 SER289 ILE290 PHE291 ARG292 PHE293 LEU294 ASN295 ILE296 PRO297
Unit 2 ASN12 ILE13 THR14 LEU15 LYS16 ILE17 ILE18 GLU19 THR20 TYR21 LEU22 GLY23 ARG24 VAL25 PRO26 SER27 VAL28 ASN29 GLU30 TYR31 HIS32 MET33 LEU34 LYS35 SER36 GLN37 ALA38 ARG39 ASN40 ILE41 GLN42 LYS43 ILE44 THR45 VAL46 PHE47 ASN48 LYS49 ASP50 ILE51 PHE52 VAL53 SER54 LEU55 VAL56 LYS57 LYS58 ASN59 LYS60 LYS61 ARG62 PHE63 PHE64 SER65 ASP66 VAL67 ASN68 THR69 SER70 ALA71 SER72 GLU73 ILE74 LYS75 ASP76 ARG77 ILE78 LEU79 SER80 TYR81 PHE82 SER83 LYS84 GLN85 THR86 GLN87 THR88 TYR89 ASN90 ILE91 GLY92 LYS93 LEU94 PHE95 THR96 ILE97 ILE98 GLU99 LEU100 GLN101 SER102 VAL103 LEU104 VAL105 THR106 THR107 TYR108 THR109 ASP110 ILE111 LEU112 GLY113 VAL114 LEU115 THR116 ILE117 ASN130 VAL131 THR132 SER133 MET134 GLU135 GLU136 LEU137 ALA138 ARG139 ASP140 MET141 LEU142 ASN143 SER144 MET145 ASN146 VAL147 ALA148 VAL149 VAL161 SER162 SER163 LEU164 VAL165 LYS166 ASN167 VAL168 ASN169 LYS170 LEU171 MET172 GLU173 GLU174 TYR175 LEU176 ARG177 ARG178 HIS179 ASN180 LYS181 SER182 CYS183 ILE184 CYS185 TYR186 GLY187 SER188 TYR189 SER190 LEU191 TYR192 LEU193 ILE194 ASN195 PRO196 ASN197 ILE198 ARG199 TYR200 GLY201 ASP202 ILE203 ASP204 ILE205 LEU206 GLN207 THR208 ASN209 SER210 ARG211 THR212 PHE213 LEU214 ILE215 ASP216 LEU217 ALA218 PHE219 LEU220 ILE221 LYS222 PHE223 ILE224 THR225 GLY226 ASN227 ASN228 ILE229 ILE230 LEU231 SER232 LYS233 ILE234 PRO235 TYR236 LEU237 ARG238 ASN239 TYR240 MET241 VAL242 ILE243 LYS244 ASP245 GLU246 ASN247 ASP248 ASN249 HIS250 ILE251 ILE252 ASP253 SER254 PHE255 ASN256 ILE257 ARG258 GLN259 ASP260 THR261 MET262 ASN263 VAL264 VAL265 PRO266 LYS267 ILE268 PHE269 ILE270 ASP271 ASN272 ILE273 TYR274 ILE275 VAL276 ASP277 PRO278 THR279 PHE280 GLN281 LEU282 LEU283 ASN284 MET285 ILE286 LYS287 MET288 PHE289 SER290 GLN291 ILE292 ASP293 ARG294 LEU295 GLU296 ASP297 LEU298 SER299 LYS300 ASP301 PRO302 GLU303 LYS304 PHE305 ASN306 ALA307 ARG308 MET309 ALA310 THR311 MET312 LEU313 GLU314 TYR315 VAL316 ARG317 TYR318 THR319 HIS320 GLY321 ILE322 VAL323 PHE324 ASP325 GLY326 LYS327 ARG328 ASN329 ASN330 MET331 PRO332 MET333 LYS334 CYS335 ILE336 ILE337 ASP338 GLU339 ASN340 ASN341 ARG342 ILE343 VAL344 THR345 VAL346 THR347 THR348 LYS349 ASP350 TYR351 PHE352 SER353 PHE354 LYS355 LYS356 CYS357 LEU358 VAL359 TYR360 LEU361 ASP362 GLU363 ASN364 VAL365 LEU366 SER367 SER368 ASP369 ILE370 LEU371 ASP372 LEU373 ASN374 ALA375 ASP376 THR377 SER378 CYS379 ASP380 PHE381 GLU382 SER383 VAL384 THR385 ASN386 SER387 VAL388 TYR389 LEU390 ILE391 HIS392 ASP393 ASN394 ILE395 MET396 TYR397 THR398 TYR399 PHE400 SER401 ASN402 THR403 ILE404 LEU405 LEU406 SER407 ASP408 LYS409 GLY410 LYS411 VAL412 HIS413 GLU414 ILE415 SER416 ALA417 ARG418 GLY419 LEU420 CYS421 ALA422 HIS423 ILE424 LEU425 LEU426 TYR427 GLN428 MET429 LEU430 THR431 SER432 GLY433 GLU434 TYR435 LYS436 GLN437 CYS438 LEU439 SER440 ASP441 LEU442 LEU443 ASN444 SER445 MET446 MET447 ASN448 ARG449 ASP450 LYS451 ILE452 PRO453 ILE454 TYR455 SER456 HIS457 THR458 GLU459 ARG460 ASP461 LYS462 LYS463 PRO464 GLY465 ARG466 HIS467 GLY468 PHE469 ILE470 ASN471 ILE472 GLU473 LYS474 ASP475 ILE476 ILE477 VAL478 PHE479
Nucleic acids
Unit 3 U600 U601
Ligands
Unit 4 GOL880 GOL890 GOL900
Unit 5 3AT800 CA901 CA902
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany