3EPH - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM
• Keywords: TRANSFERASE, ALTERNATIVE INITIATION, ATP-BINDING, CYTOPLASM, MITOCHONDRION, NUCLEOTIDE-BINDING, NUCLEUS, TRNA PROCESSING TRANSFERASE/RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3EPH	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRNA ISOPENTENYLTRANSFERASE	A	402	3339	0
2	RNA		E	69	1472	0
3	Protein	TRNA ISOPENTENYLTRANSFERASE	B	402	3339	0
4	RNA		F	69	1472	0
5	Ligand	TRNA ISOPENTENYLTRANSFERASE	A	6	0	14
6	Ligand	TRNA	E	2	0	2
7	Ligand	TRNA ISOPENTENYLTRANSFERASE	B	5	0	13
8	Ligand	TRNA	F	1	0	1
9	Water			282	0	282
total				1238	9622	312

Proteins

Unit 1

SER 13 LYS 14 LYS 15 VAL 16 ILE 17 VAL 18 ILE 19 ALA 20 GLY 21 THR 22 THR 23 GLY 24 VAL 25 GLY 26 LYS 27 SER 28 GLN 29 LEU 30 SER 31 ILE 32 GLN 33 LEU 34 ALA 35 GLN 36 LYS 37 PHE 38 ASN 39 GLY 40 GLU 41 VAL 42 ILE 43 ASN 44 SER 45 ASP 46 SER 47 MET 48 GLN 49 VAL 50 TYR 51 LYS 52 ASP 53 ILE 54 PRO 55 ILE 56 ILE 57 THR 58 ASN 59 LYS 60 HIS 61 PRO 62 LEU 63 GLN 64 GLU 65 ARG 66 GLU 67 GLY 68 ILE 69 PRO 70 HIS 71 HIS 72 VAL 73 MET 74 ASN 75 HIS 76 VAL 77 ASP 78 TRP 79 SER 80 GLU 81 GLU 82 TYR 83 TYR 84 SER 85 HIS 86 ARG 87 PHE 88 GLU 89 THR 90 GLU 91 CYS 92 MET 93 ASN 94 ALA 95 ILE 96 GLU 97 ASP 98 ILE 99 HIS 100 ARG 101 ARG 102 GLY 103 LYS 104 ILE 105 PRO 106 ILE 107 VAL 108 VAL 109 GLY 110 GLY 111 THR 112 HIS 113 TYR 114 TYR 115 LEU 116 GLN 117 THR 118 LEU 119 PHE 120 ASN 121 LYS 122 ARG 123 VAL 124 ASP 125 THR 126 LYS 127 SER 128 SER 129 GLU 130 ARG 131 LYS 132 LEU 133 THR 134 ARG 135 LYS 136 GLN 137 LEU 138 ASP 139 ILE 140 LEU 141 GLU 142 SER 143 THR 144 ASP 145 PRO 146 ASP 147 VAL 148 ILE 149 TYR 150 ASN 151 THR 152 LEU 153 VAL 154 LYS 155 CYS 156 ASP 157 PRO 158 ASP 159 ILE 160 ALA 161 THR 162 LYS 163 TYR 164 HIS 165 PRO 166 ASN 167 ASP 168 TYR 169 ARG 170 ARG 171 VAL 172 GLN 173 ARG 174 MET 175 LEU 176 GLU 177 ILE 178 TYR 179 TYR 180 LYS 181 THR 182 GLY 183 LYS 184 LYS 185 PRO 186 SER 187 GLU 188 THR 189 PHE 190 ASN 191 GLU 192 GLN 193 LYS 194 ILE 195 THR 196 LEU 197 LYS 198 PHE 199 ASP 200 THR 201 LEU 202 PHE 203 LEU 204 TRP 205 LEU 206 TYR 207 SER 208 LYS 209 PRO 210 GLU 211 PRO 212 LEU 213 PHE 214 GLN 215 ARG 216 LEU 217 ASP 218 ASP 219 ARG 220 VAL 221 ASP 222 ASP 223 MET 224 LEU 225 GLU 226 ARG 227 GLY 228 ALA 229 LEU 230 GLN 231 GLU 232 ILE 233 LYS 234 GLN 235 LEU 236 TYR 237 GLU 238 TYR 239 TYR 240 SER 241 GLN 242 ASN 243 LYS 244 PHE 245 THR 246 PRO 247 GLU 248 GLN 249 CYS 250 GLU 251 ASN 252 GLY 253 VAL 254 TRP 255 GLN 256 VAL 257 ILE 258 GLY 259 PHE 260 LYS 261 GLU 262 PHE 263 LEU 264 PRO 265 TRP 266 LEU 267 THR 268 VAL 276 LYS 277 LEU 278 GLU 279 ASP 280 CYS 281 ILE 282 GLU 283 ARG 284 MET 285 LYS 286 THR 287 ARG 288 THR 289 ARG 290 GLN 291 TYR 292 ALA 293 LYS 294 ARG 295 GLN 296 VAL 297 LYS 298 TRP 299 ILE 300 LYS 301 LYS 302 MET 303 LEU 304 ILE 305 PRO 306 ASP 307 ILE 308 LYS 309 GLY 310 ASP 311 ILE 312 TYR 313 LEU 314 LEU 315 ASP 316 ALA 317 THR 318 ASP 319 LEU 320 SER 321 GLN 322 TRP 323 ASP 324 THR 325 ASN 326 ALA 327 SER 328 GLN 329 ARG 330 ALA 331 ILE 332 ALA 333 ILE 334 SER 335 ASN 336 ASP 337 PHE 338 ILE 339 SER 340 ASN 341 ARG 342 PRO 343 ILE 344 LYS 345 GLN 346 GLU 347 ARG 348 ALA 349 PRO 350 LYS 351 ALA 352 LEU 353 GLU 354 GLU 355 LEU 356 LEU 357 SER 358 LYS 359 GLY 360 GLU 361 THR 362 THR 363 MET 364 LYS 365 LYS 366 LEU 367 ASP 368 ASP 369 TRP 370 THR 371 HIS 372 TYR 373 THR 374 CYS 375 ASN 376 VAL 377 CYS 378 ARG 379 ASN 380 ALA 381 ASP 382 GLY 383 LYS 384 ASN 385 VAL 386 VAL 387 ALA 388 ILE 389 GLY 390 GLU 391 LYS 392 TYR 393 TRP 394 LYS 395 ILE 396 HIS 397 LEU 398 GLY 399 SER 400 ARG 401 ARG 402 HIS 403 LYS 404 SER 405 ASN 406 LEU 407 LYS 408 ARG 409 ASN 410 THR 411 ARG 412 GLN 413 ALA 414 ASP 415 PHE 416 GLU 417 LYS 418 TRP 419 LYS 420 ILE 421

Unit 3

SER 13 LYS 14 LYS 15 VAL 16 ILE 17 VAL 18 ILE 19 ALA 20 GLY 21 THR 22 THR 23 GLY 24 VAL 25 GLY 26 LYS 27 SER 28 GLN 29 LEU 30 SER 31 ILE 32 GLN 33 LEU 34 ALA 35 GLN 36 LYS 37 PHE 38 ASN 39 GLY 40 GLU 41 VAL 42 ILE 43 ASN 44 SER 45 ASP 46 SER 47 MET 48 GLN 49 VAL 50 TYR 51 LYS 52 ASP 53 ILE 54 PRO 55 ILE 56 ILE 57 THR 58 ASN 59 LYS 60 HIS 61 PRO 62 LEU 63 GLN 64 GLU 65 ARG 66 GLU 67 GLY 68 ILE 69 PRO 70 HIS 71 HIS 72 VAL 73 MET 74 ASN 75 HIS 76 VAL 77 ASP 78 TRP 79 SER 80 GLU 81 GLU 82 TYR 83 TYR 84 SER 85 HIS 86 ARG 87 PHE 88 GLU 89 THR 90 GLU 91 CYS 92 MET 93 ASN 94 ALA 95 ILE 96 GLU 97 ASP 98 ILE 99 HIS 100 ARG 101 ARG 102 GLY 103 LYS 104 ILE 105 PRO 106 ILE 107 VAL 108 VAL 109 GLY 110 GLY 111 THR 112 HIS 113 TYR 114 TYR 115 LEU 116 GLN 117 THR 118 LEU 119 PHE 120 ASN 121 LYS 122 ARG 123 VAL 124 ASP 125 THR 126 LYS 127 SER 128 SER 129 GLU 130 ARG 131 LYS 132 LEU 133 THR 134 ARG 135 LYS 136 GLN 137 LEU 138 ASP 139 ILE 140 LEU 141 GLU 142 SER 143 THR 144 ASP 145 PRO 146 ASP 147 VAL 148 ILE 149 TYR 150 ASN 151 THR 152 LEU 153 VAL 154 LYS 155 CYS 156 ASP 157 PRO 158 ASP 159 ILE 160 ALA 161 THR 162 LYS 163 TYR 164 HIS 165 PRO 166 ASN 167 ASP 168 TYR 169 ARG 170 ARG 171 VAL 172 GLN 173 ARG 174 MET 175 LEU 176 GLU 177 ILE 178 TYR 179 TYR 180 LYS 181 THR 182 GLY 183 LYS 184 LYS 185 PRO 186 SER 187 GLU 188 THR 189 PHE 190 ASN 191 GLU 192 GLN 193 LYS 194 ILE 195 THR 196 LEU 197 LYS 198 PHE 199 ASP 200 THR 201 LEU 202 PHE 203 LEU 204 TRP 205 LEU 206 TYR 207 SER 208 LYS 209 PRO 210 GLU 211 PRO 212 LEU 213 PHE 214 GLN 215 ARG 216 LEU 217 ASP 218 ASP 219 ARG 220 VAL 221 ASP 222 ASP 223 MET 224 LEU 225 GLU 226 ARG 227 GLY 228 ALA 229 LEU 230 GLN 231 GLU 232 ILE 233 LYS 234 GLN 235 LEU 236 TYR 237 GLU 238 TYR 239 TYR 240 SER 241 GLN 242 ASN 243 LYS 244 PHE 245 THR 246 PRO 247 GLU 248 GLN 249 CYS 250 GLU 251 ASN 252 GLY 253 VAL 254 TRP 255 GLN 256 VAL 257 ILE 258 GLY 259 PHE 260 LYS 261 GLU 262 PHE 263 LEU 264 PRO 265 TRP 266 LEU 267 THR 268 VAL 276 LYS 277 LEU 278 GLU 279 ASP 280 CYS 281 ILE 282 GLU 283 ARG 284 MET 285 LYS 286 THR 287 ARG 288 THR 289 ARG 290 GLN 291 TYR 292 ALA 293 LYS 294 ARG 295 GLN 296 VAL 297 LYS 298 TRP 299 ILE 300 LYS 301 LYS 302 MET 303 LEU 304 ILE 305 PRO 306 ASP 307 ILE 308 LYS 309 GLY 310 ASP 311 ILE 312 TYR 313 LEU 314 LEU 315 ASP 316 ALA 317 THR 318 ASP 319 LEU 320 SER 321 GLN 322 TRP 323 ASP 324 THR 325 ASN 326 ALA 327 SER 328 GLN 329 ARG 330 ALA 331 ILE 332 ALA 333 ILE 334 SER 335 ASN 336 ASP 337 PHE 338 ILE 339 SER 340 ASN 341 ARG 342 PRO 343 ILE 344 LYS 345 GLN 346 GLU 347 ARG 348 ALA 349 PRO 350 LYS 351 ALA 352 LEU 353 GLU 354 GLU 355 LEU 356 LEU 357 SER 358 LYS 359 GLY 360 GLU 361 THR 362 THR 363 MET 364 LYS 365 LYS 366 LEU 367 ASP 368 ASP 369 TRP 370 THR 371 HIS 372 TYR 373 THR 374 CYS 375 ASN 376 VAL 377 CYS 378 ARG 379 ASN 380 ALA 381 ASP 382 GLY 383 LYS 384 ASN 385 VAL 386 VAL 387 ALA 388 ILE 389 GLY 390 GLU 391 LYS 392 TYR 393 TRP 394 LYS 395 ILE 396 HIS 397 LEU 398 GLY 399 SER 400 ARG 401 ARG 402 HIS 403 LYS 404 SER 405 ASN 406 LEU 407 LYS 408 ARG 409 ASN 410 THR 411 ARG 412 GLN 413 ALA 414 ASP 415 PHE 416 GLU 417 LYS 418 TRP 419 LYS 420 ILE 421

Nucleic acids

Unit 2	C 2 U 3 C 4 G 5 U 6 A 7 U 8 G 9 G 10 C 11 G 12 C 13 A 14 G 15 U 16 G 18 G 19 U 20 A 21 G 22 C 23 G 24 C 25 A 26 G 27 C 28 A 29 G 30 A 31 U 32 U 33 G 34 C 35 A 36 A 37 A 38 U 39 C 40 U 41 G 42 U 43 U 44 G 45 G 46 U 47 C 48 C 49 U 50 U 51 A 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 C 60 C 61 U 62 G 63 A 64 G 65 U 66 G 67 C 68 G 69 A 70 G 71
Unit 4	C 2 U 3 C 4 G 5 U 6 A 7 U 8 G 9 G 10 C 11 G 12 C 13 A 14 G 15 U 16 G 18 G 19 U 20 A 21 G 22 C 23 G 24 C 25 A 26 G 27 C 28 A 29 G 30 A 31 U 32 U 33 G 34 C 35 A 36 A 37 A 38 U 39 C 40 U 41 G 42 U 43 U 44 G 45 G 46 U 47 C 48 C 49 U 50 U 51 A 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 C 60 C 61 U 62 G 63 A 64 G 65 U 66 G 67 C 68 G 69 A 70 G 71

Ligands

Unit 5	ZN 1 MG 2 MG 4 MG 6 MG 7 PPV 422
Unit 6	MG 72 MG 73
Unit 7	ZN 1 MG 2 MG 4 MG 5 PPV 422
Unit 8	MG 72