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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF Y2 I-ANII VARIANT (F13Y/S111Y)/DNA COMP CALCIUM
Keywords PROTEIN-DNA COMPLEX, ENDONUCLEASE, HYDROLASE, INTRON HOMING, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, NUCLEASE, HY DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3EH8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  A 254 2091 0
2  Protein   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  D 254 2091 0
3  Protein   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  G 254 2091 0
4  Other macromolecule   31-MER  B 31 638 0
5  Other macromolecule   31-MER  C 31 627 0
6  Other macromolecule   31-MER  E 31 638 0
7  Other macromolecule   31-MER  F 31 627 0
8  Other macromolecule   31-MER  H 31 638 0
9  Other macromolecule   31-MER  I 31 627 0
10  Ligand   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  A 2 0 2
11  Ligand   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  D 2 0 2
12  Ligand   INTRON-ENCODED DNA ENDONUCLEASE I-ANII  G 2 0 2
13 Water     67 0 67
total       1021 10068 73
Proteins
Unit 1 GLY1 SER2 ASP3 LEU4 THR5 TYR6 ALA7 TYR8 LEU9 VAL10 GLY11 LEU12 TYR13 GLU14 GLY15 ASP16 GLY17 TYR18 PHE19 SER20 ILE21 THR22 LYS23 LYS24 GLY25 LYS26 TYR27 LEU28 THR29 TYR30 GLU31 LEU32 GLY33 ILE34 GLU35 LEU36 SER37 ILE38 LYS39 ASP40 VAL41 GLN42 LEU43 ILE44 TYR45 LYS46 ILE47 LYS48 LYS49 ILE50 LEU51 GLY52 ILE53 GLY54 ILE55 VAL56 SER57 PHE58 ARG59 LYS60 ARG61 ASN62 GLU63 ILE64 GLU65 MET66 VAL67 ALA68 LEU69 ARG70 ILE71 ARG72 ASP73 LYS74 ASN75 HIS76 LEU77 LYS78 SER79 LYS80 ILE81 LEU82 PRO83 ILE84 PHE85 GLU86 LYS87 TYR88 PRO89 MET90 PHE91 SER92 ASN93 LYS94 GLN95 TYR96 ASP97 TYR98 LEU99 ARG100 PHE101 ARG102 ASN103 ALA104 LEU105 LEU106 SER107 GLY108 ILE109 ILE110 TYR111 LEU112 GLU113 ASP114 LEU115 PRO116 ASP117 TYR118 THR119 ARG120 SER121 ASP122 GLU123 PRO124 LEU125 ASN126 SER127 ILE128 GLU129 SER130 ILE131 ILE132 ASN133 THR134 SER135 TYR136 PHE137 SER138 ALA139 TRP140 LEU141 VAL142 GLY143 PHE144 ILE145 GLU146 ALA147 GLU148 GLY149 CYS150 PHE151 SER152 VAL153 TYR154 LYS155 LEU156 ASN157 LYS158 ASP159 ASP160 ASP161 TYR162 LEU163 ILE164 ALA165 SER166 PHE167 ASP168 ILE169 ALA170 GLN171 ARG172 ASP173 GLY174 ASP175 ILE176 LEU177 ILE178 SER179 ALA180 ILE181 ARG182 LYS183 TYR184 LEU185 SER186 PHE187 THR188 THR189 LYS190 VAL191 TYR192 LEU193 ASP194 LYS195 THR196 ASN197 CYS198 SER199 LYS200 LEU201 LYS202 VAL203 THR204 SER205 VAL206 ARG207 SER208 VAL209 GLU210 ASN211 ILE212 ILE213 LYS214 PHE215 LEU216 GLN217 ASN218 ALA219 PRO220 VAL221 LYS222 LEU223 LEU224 GLY225 ASN226 LYS227 LYS228 LEU229 GLN230 TYR231 LYS232 LEU233 TRP234 LEU235 LYS236 GLN237 LEU238 ARG239 LYS240 ILE241 SER242 ARG243 TYR244 SER245 GLU246 LYS247 ILE248 LYS249 ILE250 PRO251 SER252 ASN253 TYR254
Unit 2 GLY1 SER2 ASP3 LEU4 THR5 TYR6 ALA7 TYR8 LEU9 VAL10 GLY11 LEU12 TYR13 GLU14 GLY15 ASP16 GLY17 TYR18 PHE19 SER20 ILE21 THR22 LYS23 LYS24 GLY25 LYS26 TYR27 LEU28 THR29 TYR30 GLU31 LEU32 GLY33 ILE34 GLU35 LEU36 SER37 ILE38 LYS39 ASP40 VAL41 GLN42 LEU43 ILE44 TYR45 LYS46 ILE47 LYS48 LYS49 ILE50 LEU51 GLY52 ILE53 GLY54 ILE55 VAL56 SER57 PHE58 ARG59 LYS60 ARG61 ASN62 GLU63 ILE64 GLU65 MET66 VAL67 ALA68 LEU69 ARG70 ILE71 ARG72 ASP73 LYS74 ASN75 HIS76 LEU77 LYS78 SER79 LYS80 ILE81 LEU82 PRO83 ILE84 PHE85 GLU86 LYS87 TYR88 PRO89 MET90 PHE91 SER92 ASN93 LYS94 GLN95 TYR96 ASP97 TYR98 LEU99 ARG100 PHE101 ARG102 ASN103 ALA104 LEU105 LEU106 SER107 GLY108 ILE109 ILE110 TYR111 LEU112 GLU113 ASP114 LEU115 PRO116 ASP117 TYR118 THR119 ARG120 SER121 ASP122 GLU123 PRO124 LEU125 ASN126 SER127 ILE128 GLU129 SER130 ILE131 ILE132 ASN133 THR134 SER135 TYR136 PHE137 SER138 ALA139 TRP140 LEU141 VAL142 GLY143 PHE144 ILE145 GLU146 ALA147 GLU148 GLY149 CYS150 PHE151 SER152 VAL153 TYR154 LYS155 LEU156 ASN157 LYS158 ASP159 ASP160 ASP161 TYR162 LEU163 ILE164 ALA165 SER166 PHE167 ASP168 ILE169 ALA170 GLN171 ARG172 ASP173 GLY174 ASP175 ILE176 LEU177 ILE178 SER179 ALA180 ILE181 ARG182 LYS183 TYR184 LEU185 SER186 PHE187 THR188 THR189 LYS190 VAL191 TYR192 LEU193 ASP194 LYS195 THR196 ASN197 CYS198 SER199 LYS200 LEU201 LYS202 VAL203 THR204 SER205 VAL206 ARG207 SER208 VAL209 GLU210 ASN211 ILE212 ILE213 LYS214 PHE215 LEU216 GLN217 ASN218 ALA219 PRO220 VAL221 LYS222 LEU223 LEU224 GLY225 ASN226 LYS227 LYS228 LEU229 GLN230 TYR231 LYS232 LEU233 TRP234 LEU235 LYS236 GLN237 LEU238 ARG239 LYS240 ILE241 SER242 ARG243 TYR244 SER245 GLU246 LYS247 ILE248 LYS249 ILE250 PRO251 SER252 ASN253 TYR254
Unit 3 GLY1 SER2 ASP3 LEU4 THR5 TYR6 ALA7 TYR8 LEU9 VAL10 GLY11 LEU12 TYR13 GLU14 GLY15 ASP16 GLY17 TYR18 PHE19 SER20 ILE21 THR22 LYS23 LYS24 GLY25 LYS26 TYR27 LEU28 THR29 TYR30 GLU31 LEU32 GLY33 ILE34 GLU35 LEU36 SER37 ILE38 LYS39 ASP40 VAL41 GLN42 LEU43 ILE44 TYR45 LYS46 ILE47 LYS48 LYS49 ILE50 LEU51 GLY52 ILE53 GLY54 ILE55 VAL56 SER57 PHE58 ARG59 LYS60 ARG61 ASN62 GLU63 ILE64 GLU65 MET66 VAL67 ALA68 LEU69 ARG70 ILE71 ARG72 ASP73 LYS74 ASN75 HIS76 LEU77 LYS78 SER79 LYS80 ILE81 LEU82 PRO83 ILE84 PHE85 GLU86 LYS87 TYR88 PRO89 MET90 PHE91 SER92 ASN93 LYS94 GLN95 TYR96 ASP97 TYR98 LEU99 ARG100 PHE101 ARG102 ASN103 ALA104 LEU105 LEU106 SER107 GLY108 ILE109 ILE110 TYR111 LEU112 GLU113 ASP114 LEU115 PRO116 ASP117 TYR118 THR119 ARG120 SER121 ASP122 GLU123 PRO124 LEU125 ASN126 SER127 ILE128 GLU129 SER130 ILE131 ILE132 ASN133 THR134 SER135 TYR136 PHE137 SER138 ALA139 TRP140 LEU141 VAL142 GLY143 PHE144 ILE145 GLU146 ALA147 GLU148 GLY149 CYS150 PHE151 SER152 VAL153 TYR154 LYS155 LEU156 ASN157 LYS158 ASP159 ASP160 ASP161 TYR162 LEU163 ILE164 ALA165 SER166 PHE167 ASP168 ILE169 ALA170 GLN171 ARG172 ASP173 GLY174 ASP175 ILE176 LEU177 ILE178 SER179 ALA180 ILE181 ARG182 LYS183 TYR184 LEU185 SER186 PHE187 THR188 THR189 LYS190 VAL191 TYR192 LEU193 ASP194 LYS195 THR196 ASN197 CYS198 SER199 LYS200 LEU201 LYS202 VAL203 THR204 SER205 VAL206 ARG207 SER208 VAL209 GLU210 ASN211 ILE212 ILE213 LYS214 PHE215 LEU216 GLN217 ASN218 ALA219 PRO220 VAL221 LYS222 LEU223 LEU224 GLY225 ASN226 LYS227 LYS228 LEU229 GLN230 TYR231 LYS232 LEU233 TRP234 LEU235 LYS236 GLN237 LEU238 ARG239 LYS240 ILE241 SER242 ARG243 TYR244 SER245 GLU246 LYS247 ILE248 LYS249 ILE250 PRO251 SER252 ASN253 TYR254
Other macromolecules
Unit 4 DG1 DC2 DG3 DC4 DG5 DC6 DT7 DG8 DA9 DG10 DG11 DA12 DG13 DG14 DT15 DT16 DT17 DC18 DT19 DC20 DT21 DG22 DT23 DA24 DA25 DA26 DG27 DC28 DG29 DC30 DA31
Unit 5 DG1 DC2 DG3 DC4 DT5 DT6 DT7 DA8 DC9 DA10 DG11 DA12 DG13 DA14 DA15 DA16 DC17 DC18 DT19 DC20 DC21 DT22 DC23 DA24 DG25 DC26 DG27 DC28 DG29 DC30 DT31
Unit 6 DG1 DC2 DG3 DC4 DG5 DC6 DT7 DG8 DA9 DG10 DG11 DA12 DG13 DG14 DT15 DT16 DT17 DC18 DT19 DC20 DT21 DG22 DT23 DA24 DA25 DA26 DG27 DC28 DG29 DC30 DA31
Unit 7 DG1 DC2 DG3 DC4 DT5 DT6 DT7 DA8 DC9 DA10 DG11 DA12 DG13 DA14 DA15 DA16 DC17 DC18 DT19 DC20 DC21 DT22 DC23 DA24 DG25 DC26 DG27 DC28 DG29 DC30 DT31
Unit 8 DG1 DC2 DG3 DC4 DG5 DC6 DT7 DG8 DA9 DG10 DG11 DA12 DG13 DG14 DT15 DT16 DT17 DC18 DT19 DC20 DT21 DG22 DT23 DA24 DA25 DA26 DG27 DC28 DG29 DC30 DA31
Unit 9 DG1 DC2 DG3 DC4 DT5 DT6 DT7 DA8 DC9 DA10 DG11 DA12 DG13 DA14 DA15 DA16 DC17 DC18 DT19 DC20 DC21 DT22 DC23 DA24 DG25 DC26 DG27 DC28 DG29 DC30 DT31
Ligands
Unit 10 CA301 CA302
Unit 11 CA303 CA304
Unit 12 CA305 CA306
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany