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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AN IN VITRO EVOLVED TETRACYCLINE APTAME ARTIFICIAL RIBOSWITCH
Keywords TETRACYCLINE, APTAMER, RIBOSWITCH, ANTIBIOTIC, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 91 703 24
2  RNA    B 65 1380 0
3  Ligand   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 1 0 1
4  Ligand   TETRACYCLINE APTAMER AND ARTIFICIAL RIBOSWITCH  B 12 0 44
5 Water     146 0 146
total       315 2083 215

Proteins
Unit 1 THR201 ARG202 PRO203 ASN204 HIS205 THR206 ILE207 TYR208 ILE209 ASN210 ASN211 LEU212 ASN213 GLU214 LYS215 ILE216 LYS217 LYS218 ASP219 GLU220 LEU221 LYS222 LYS223 SER224 LEU225 HIS226 ALA227 ILE228 PHE229 SER230 ARG231 PHE232 GLY233 GLN234 ILE235 LEU236 ASP237 ILE238 LEU239 VAL240 SER241 ARG242 SER243 LEU244 LYS245 MSE246 ARG247 GLY248 GLN249 ALA250 PHE251 VAL252 ILE253 PHE254 LYS255 GLU256 VAL257 SER258 SER259 ALA260 THR261 ASN262 ALA263 LEU264 ARG265 SER266 MSE267 GLN268 GLY269 PHE270 PRO271 PHE272 TYR273 ASP274 LYS275 PRO276 MSE277 ARG278 ILE279 GLN280 TYR281 ALA282 LYS283 THR284 ASP285 SER286 ASP287 ILE288 ILE289 ALA290 LYS291

Nucleic acids
Unit 2 G1 A2 G3 G4 G5 A6 G7 A8 G9 G10 U11 G12 A13 A14 G15 A16 A17 U18 A19 C20 G21 A22 C23 C24 A25 C26 C27 U28 A29 G30 G31 U32 A33 C34 C35 A36 U37 U38 G39 C40 A41 C42 U43 C44 C45 G46 G47 U48 A49 C50 C51 U52 A53 A54 A55 A56 C57 A58 U59 A60 C61 C62 C63 U64 C65

Ligands
Unit 3 MG510
Unit 4 MG501 MG502 MG503 MG504 MG505 MG506 MG507 MG508 MG509 MG511 MG512 CTC601

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany