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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE MAMMALIAN COPII-COAT PROTEIN SEC23A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND TO THE TRA SIGNAL SEQUENCE OF VESICULAR STOMATITIS VIRUS GLYCOPROTEIN
Keywords COPII COAT, TRANSPORT SIGNAL SEQUENCE, VESICLE, DISEASE MUTA ENDOPLASMIC RETICULUM, ER-GOLGI TRANSPORT, GOLGI APPARATUS, MEMBRANE, PROTEIN TRANSPORT, TRANSPORT, PHOSPHOPROTEIN, TRANSMEMBRANE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3EGD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN TRANSPORT PROTEIN SEC23A  A 711 5645 0
2  Protein   PROTEIN TRANSPORT PROTEIN SEC24A  B 731 5780 0
3  Protein   VESICLE-TRAFFICKING PROTEIN SEC22B  C 137 1104 0
4  Protein   10 RESIDUE PEPTIDE FROM VSV GLYCOPROTEIN  D 7 60 0
5  Ligand   PROTEIN TRANSPORT PROTEIN SEC23A  A 1 0 1
6  Ligand   PROTEIN TRANSPORT PROTEIN SEC24A  B 1 0 1
7 Water     163 0 163
total       1751 12589 165
Proteins
Unit 1 THR3 TYR4 LEU5 GLU6 PHE7 ILE8 GLN9 GLN10 ASN11 GLU12 GLU13 ARG14 ASP15 GLY16 VAL17 ARG18 PHE19 SER20 TRP21 ASN22 VAL23 TRP24 PRO25 SER26 SER27 ARG28 LEU29 GLU30 ALA31 THR32 ARG33 MET34 VAL35 VAL36 PRO37 VAL38 ALA39 ALA40 LEU41 PHE42 THR43 PRO44 LEU45 LYS46 GLU47 ARG48 PRO49 ASP50 LEU51 PRO52 PRO53 ILE54 GLN55 TYR56 GLU57 PRO58 VAL59 LEU60 CYS61 SER62 ARG63 THR64 THR65 CYS66 ARG67 ALA68 VAL69 LEU70 ASN71 PRO72 LEU73 CYS74 GLN75 VAL76 ASP77 TYR78 ARG79 ALA80 LYS81 LEU82 TRP83 ALA84 CYS85 ASN86 PHE87 CYS88 TYR89 GLN90 ARG91 ASN92 GLN93 PHE94 PRO95 PRO96 SER97 TYR98 ALA99 GLY100 ILE101 SER102 GLU103 LEU104 ASN105 GLN106 PRO107 ALA108 GLU109 LEU110 LEU111 PRO112 GLN113 PHE114 SER115 SER116 ILE117 GLU118 TYR119 VAL120 VAL121 LEU122 ARG123 GLY124 PRO125 GLN126 MET127 PRO128 LEU129 ILE130 PHE131 LEU132 TYR133 VAL134 VAL135 ASP136 THR137 CYS138 MET139 GLU140 ASP141 GLU142 ASP143 LEU144 GLN145 ALA146 LEU147 LYS148 GLU149 SER150 MET151 GLN152 MET153 SER154 LEU155 SER156 LEU157 LEU158 PRO159 PRO160 THR161 ALA162 LEU163 VAL164 GLY165 LEU166 ILE167 THR168 PHE169 GLY170 ARG171 MET172 VAL173 GLN174 VAL175 HIS176 GLU177 LEU178 GLY179 CYS180 GLU181 GLY182 ILE183 SER184 LYS185 SER186 TYR187 VAL188 PHE189 ARG190 GLY191 THR192 LYS193 ASP194 LEU195 SER196 ALA197 LYS198 GLN199 LEU200 GLN201 GLU202 MET203 LEU204 GLY205 PRO223 PRO224 PRO225 SER226 ASN227 ARG228 PHE229 LEU230 GLN231 PRO232 VAL233 GLN234 LYS235 ILE236 ASP237 MET238 ASN239 LEU240 THR241 ASP242 LEU243 LEU244 GLY245 GLU246 LEU247 GLN248 ARG249 ASP250 PRO251 TRP252 PRO253 VAL254 PRO255 GLN256 GLY257 LYS258 ARG259 PRO260 LEU261 ARG262 SER263 SER264 GLY265 VAL266 ALA267 LEU268 SER269 ILE270 ALA271 VAL272 GLY273 LEU274 LEU275 GLU276 CYS277 THR278 PHE279 PRO280 ASN281 THR282 GLY283 ALA284 ARG285 ILE286 MET287 MET288 PHE289 ILE290 GLY291 GLY292 PRO293 ALA294 THR295 GLN296 GLY297 PRO298 GLY299 MET300 VAL301 VAL302 GLY303 ASP304 GLU305 LEU306 LYS307 THR308 PRO309 ILE310 ARG311 SER312 TRP313 HIS314 ASP315 ILE316 ASP317 LYS318 ASP319 ASN320 ALA321 LYS322 TYR323 VAL324 LYS325 LYS326 GLY327 THR328 LYS329 HIS330 PHE331 GLU332 ALA333 LEU334 ALA335 ASN336 ARG337 ALA338 ALA339 THR340 THR341 GLY342 HIS343 VAL344 ILE345 ASP346 ILE347 TYR348 ALA349 CYS350 ALA351 LEU352 ASP353 GLN354 THR355 GLY356 LEU357 LEU358 GLU359 MET360 LYS361 CYS362 CYS363 PRO364 ASN365 LEU366 THR367 GLY368 GLY369 TYR370 MET371 VAL372 MET373 GLY374 ASP375 SER376 PHE377 ASN378 THR379 SER380 LEU381 PHE382 LYS383 GLN384 THR385 PHE386 GLN387 ARG388 VAL389 PHE390 THR391 LYS392 ASP393 MET394 HIS395 GLY396 GLN397 PHE398 LYS399 MET400 GLY401 PHE402 GLY403 GLY404 THR405 LEU406 GLU407 ILE408 LYS409 THR410 SER411 ARG412 GLU413 ILE414 LYS415 ILE416 SER417 GLY418 ALA419 ILE420 GLY421 PRO422 CYS423 VAL424 SER425 LEU426 ASN427 SER428 LYS429 GLY430 PRO431 CYS432 VAL433 SER434 GLU435 ASN436 GLU437 ILE438 GLY439 THR440 GLY441 GLY442 THR443 CYS444 GLN445 TRP446 LYS447 ILE448 CYS449 GLY450 LEU451 SER452 PRO453 THR454 THR455 THR456 LEU457 ALA458 ILE459 TYR460 PHE461 GLU462 VAL463 VAL464 GLY474 GLY475 ARG476 GLY477 ALA478 ILE479 GLN480 PHE481 VAL482 THR483 GLN484 TYR485 GLN486 HIS487 SER488 SER489 GLY490 GLN491 ARG492 ARG493 ILE494 ARG495 VAL496 THR497 THR498 ILE499 ALA500 ARG501 ASN502 TRP503 ALA504 ASP505 ALA506 GLN507 THR508 GLN509 ILE510 GLN511 ASN512 ILE513 ALA514 ALA515 SER516 PHE517 ASP518 GLN519 GLU520 ALA521 ALA522 ALA523 ILE524 LEU525 MET526 ALA527 ARG528 LEU529 ALA530 ILE531 TYR532 ARG533 ALA534 GLU535 THR536 GLU537 ASP541 VAL542 LEU543 ARG544 TRP545 LEU546 ASP547 ARG548 GLN549 LEU550 ILE551 ARG552 LEU553 CYS554 GLN555 LYS556 PHE557 GLY558 GLU559 TYR560 HIS561 LYS562 ASP563 ASP564 PRO565 SER566 SER567 PHE568 ARG569 PHE570 SER571 GLU572 THR573 PHE574 SER575 LEU576 TYR577 PRO578 GLN579 PHE580 MET581 PHE582 HIS583 LEU584 ARG585 ARG586 SER587 SER588 PHE589 LEU590 GLN591 VAL592 PHE593 ASN594 ASN595 SER596 PRO597 ASP598 GLU599 SER600 SER601 TYR602 TYR603 ARG604 HIS605 HIS606 PHE607 MET608 ARG609 GLN610 ASP611 LEU612 THR613 GLN614 SER615 LEU616 ILE617 MET618 ILE619 GLN620 PRO621 ILE622 LEU623 TYR624 ALA625 TYR626 SER627 PHE628 SER629 GLY630 PRO631 PRO632 GLU633 PRO634 VAL635 LEU636 LEU637 ASP638 SER639 SER640 SER641 ILE642 LEU643 ALA644 ASP645 ARG646 ILE647 LEU648 LEU649 MET650 ASP651 THR652 PHE653 PHE654 GLN655 ILE656 LEU657 ILE658 TYR659 HIS660 GLY661 GLU662 THR663 ILE664 ALA665 GLN666 TRP667 ARG668 LYS669 SER670 GLY671 TYR672 GLN673 ASP674 MET675 PRO676 GLU677 TYR678 GLU679 ASN680 PHE681 ARG682 HIS683 LEU684 LEU685 GLN686 ALA687 PRO688 VAL689 ASP690 ASP691 ALA692 GLN693 GLU694 ILE695 LEU696 HIS697 SER698 ARG699 PHE700 PRO701 MET702 PRO703 ARG704 TYR705 ILE706 ASP707 THR708 GLU709 HIS710 GLY711 GLY712 SER713 GLN714 ALA715 ARG716 PHE717 LEU718 LEU719 SER720 LYS721 VAL722 ASN723 ASP746 VAL747 SER748 LEU749 GLN750 VAL751 PHE752 MET753 ASP754 HIS755 LEU756 LYS757 LYS758 LEU759 ALA760 VAL761 SER762 SER763 ALA764
Unit 2 GLU346 GLY347 LEU348 ARG349 VAL350 VAL351 ASN352 LEU353 LEU354 GLN355 GLU356 ARG357 ASN358 MET359 LEU360 PRO361 SER362 THR363 PRO364 LEU365 LYS366 PRO367 PRO368 VAL369 PRO370 ASN371 LEU372 HIS373 GLU374 ASP375 ILE376 GLN377 LYS378 LEU379 ASN380 CYS381 ASN382 PRO383 GLU384 LEU385 PHE386 ARG387 CYS388 THR389 LEU390 THR391 SER392 ILE393 PRO394 GLN395 THR396 GLN397 ALA398 LEU399 LEU400 ASN401 LYS402 ALA403 LYS404 LEU405 PRO406 LEU407 GLY408 LEU409 LEU410 LEU411 HIS412 PRO413 PHE414 LYS415 ASP416 LEU417 VAL418 GLN419 LEU420 PRO421 VAL422 VAL423 THR424 SER425 SER426 THR427 ILE428 VAL429 ARG430 CYS431 ARG432 SER433 CYS434 ARG435 THR436 TYR437 ILE438 ASN439 PRO440 PHE441 VAL442 SER443 PHE444 LEU445 ASP446 GLN447 ARG448 ARG449 TRP450 LYS451 CYS452 ASN453 LEU454 CYS455 TYR456 ARG457 VAL458 ASN459 ASP460 VAL461 PRO462 GLU463 GLU464 PHE465 LEU466 GLU476 PRO477 HIS478 ARG479 ARG480 PRO481 GLU482 VAL483 GLN484 ASN485 ALA486 THR487 ILE488 GLU489 PHE490 MET491 ALA492 PRO493 SER494 GLU495 TYR496 MET497 LEU498 ARG499 PRO500 PRO501 GLN502 PRO503 PRO504 VAL505 TYR506 LEU507 PHE508 VAL509 PHE510 ASP511 VAL512 SER513 HIS514 ASN515 ALA516 VAL517 GLU518 THR519 GLY520 TYR521 LEU522 ASN523 SER524 VAL525 CYS526 GLN527 SER528 LEU529 LEU530 ASP531 ASN532 LEU533 ASP534 LEU535 LEU536 PRO537 GLY538 ASN539 THR540 ARG541 THR542 LYS543 ILE544 GLY545 PHE546 ILE547 THR548 PHE549 ASP550 SER551 THR552 ILE553 HIS554 PHE555 TYR556 GLY557 LEU558 GLN559 GLU560 SER561 LEU562 SER563 GLN564 PRO565 GLN566 MET567 LEU568 ILE569 VAL570 SER571 ASP572 ILE573 GLU574 ASP575 VAL576 PHE577 ILE578 PRO579 MET580 PRO581 GLU582 ASN583 LEU584 LEU585 VAL586 ASN587 LEU588 ASN589 GLU590 SER591 LYS592 GLU593 LEU594 VAL595 GLN596 ASP597 LEU598 LEU599 LYS600 THR601 LEU602 PRO603 GLN604 MET605 PHE606 THR607 LYS608 THR609 LEU610 GLU611 THR612 GLN613 SER614 ALA615 LEU616 GLY617 PRO618 ALA619 LEU620 GLN621 ALA622 ALA623 PHE624 LYS625 LEU626 MET627 SER628 PRO629 THR630 GLY631 GLY632 ARG633 MET634 SER635 VAL636 PHE637 GLN638 THR639 GLN640 LEU641 PRO642 THR643 LEU644 GLY645 VAL646 GLY647 ALA648 LEU649 LYS650 PRO651 ARG652 GLU653 GLU654 PRO655 ASN656 HIS657 ARG658 SER659 SER660 ALA661 LYS662 MET666 THR667 PRO668 SER669 THR670 ASP671 PHE672 TYR673 LYS674 LYS675 LEU676 ALA677 LEU678 ASP679 CYS680 SER681 GLY682 GLN683 GLN684 VAL685 ALA686 VAL687 ASP688 LEU689 PHE690 LEU691 LEU692 SER693 GLY694 GLN695 TYR696 SER697 ASP698 LEU699 ALA700 SER701 LEU702 GLY703 CYS704 ILE705 SER706 ARG707 TYR708 SER709 ALA710 GLY711 SER712 VAL713 TYR714 TYR715 TYR716 PRO717 SER718 TYR719 HIS720 HIS721 GLN722 HIS723 ASN724 PRO725 VAL726 GLN727 VAL728 GLN729 LYS730 LEU731 GLN732 LYS733 GLU734 LEU735 GLN736 ARG737 TYR738 LEU739 THR740 ARG741 LYS742 ILE743 GLY744 PHE745 GLU746 ALA747 VAL748 MET749 ARG750 ILE751 ARG752 CYS753 THR754 LYS755 GLY756 LEU757 SER758 ILE759 HIS760 THR761 PHE762 HIS763 GLY764 ASN765 PHE766 PHE767 VAL768 ARG769 SER770 THR771 ASP772 LEU773 LEU774 SER775 LEU776 PRO777 ASN778 VAL779 ASN780 PRO781 ASP782 ALA783 GLY784 TYR785 ALA786 VAL787 GLN788 MET789 SER790 VAL791 GLU792 GLU793 SER794 LEU795 THR796 ASP797 THR798 GLN799 LEU800 VAL801 SER802 PHE803 GLN804 SER805 ALA806 LEU807 LEU808 TYR809 THR810 SER811 SER812 LYS813 GLY814 GLU815 ARG816 ARG817 ILE818 ARG819 VAL820 HIS821 THR822 LEU823 CYS824 LEU825 PRO826 VAL827 VAL828 SER829 THR830 LEU831 ASN832 ASP833 VAL834 PHE835 LEU836 GLY837 ALA838 ASP839 VAL840 GLN841 ALA842 ILE843 SER844 GLY845 LEU846 LEU847 ALA848 ASN849 MET850 ALA851 VAL852 ASP853 ARG854 SER855 MET856 THR857 ALA858 SER859 LEU860 SER861 ASP862 ALA863 ARG864 ASP865 ALA866 LEU867 VAL868 ASN869 ALA870 VAL871 ILE872 ASP873 SER874 LEU875 SER876 ALA877 TYR878 ARG879 SER880 SER881 VAL882 PRO888 GLY889 LEU890 MET891 VAL892 PRO893 PHE894 SER895 LEU896 ARG897 LEU898 PHE899 PRO900 LEU901 PHE902 VAL903 LEU904 ALA905 LEU906 LEU907 LYS908 GLN909 LYS910 SER911 PHE912 GLN913 THR914 GLY915 THR916 ASN917 ALA918 ARG919 LEU920 ASP921 GLU922 ARG923 ILE924 PHE925 ALA926 MET927 CYS928 GLN929 VAL930 LYS931 ASN932 GLN933 PRO934 LEU935 VAL936 TYR937 LEU938 MET939 LEU940 THR941 THR942 HIS943 PRO944 SER945 LEU946 TYR947 ARG948 VAL949 ASP950 ASN951 LEU952 SER953 ASP954 GLU955 GLY956 ALA957 LEU958 ASN959 ILE960 SER961 ASP962 ARG963 THR964 ILE965 PRO966 GLN967 PRO968 PRO969 ILE970 LEU971 GLN972 LEU973 SER974 VAL975 GLU976 LYS977 LEU978 SER979 ARG980 ASP981 GLY982 ALA983 PHE984 LEU985 MET986 ASP987 ALA988 GLY989 SER990 VAL991 LEU992 MET993 LEU994 TRP995 VAL996 GLY997 LYS998 ASN999 CYS1000 THR1001 GLN1002 ASN1003 PHE1004 LEU1005 SER1006 GLN1007 VAL1008 LEU1009 GLY1010 VAL1011 GLN1012 ASN1013 TYR1014 ALA1015 SER1016 ILE1017 PRO1018 GLN1019 PRO1020 MET1021 THR1022 ASP1023 LEU1024 PRO1025 GLU1026 LEU1027 ASP1028 THR1029 PRO1030 GLU1031 SER1032 ALA1033 ARG1034 ILE1035 ILE1036 ALA1037 PHE1038 ILE1039 SER1040 TRP1041 LEU1042 ARG1043 GLU1044 GLN1045 ARG1046 PRO1047 PHE1048 PHE1049 PRO1050 ILE1051 LEU1052 TYR1053 VAL1054 ILE1055 ALA1056 ASP1057 GLU1058 SER1059 PRO1060 MET1061 LYS1062 ALA1063 ASN1064 PHE1065 LEU1066 GLN1067 ASN1068 MET1069 ILE1070 GLU1071 ASP1072 ARG1073 THR1074 GLU1075 SER1076 ALA1077 LEU1078 SER1079 TYR1080 TYR1081 GLU1082 PHE1083 LEU1084 LEU1085 HIS1086 ILE1087 GLN1088 GLN1089 GLN1090 VAL1091 ASN1092 LYS1093
Unit 3 MET1 VAL2 LEU3 LEU4 THR5 MET6 ILE7 ALA8 ARG9 VAL10 ALA11 ASP12 GLY13 LEU14 PRO15 LEU16 ALA17 ALA18 SER19 MET20 GLN21 GLU22 ASP23 ASP29 LEU30 GLN31 GLN32 TYR33 GLN34 SER35 GLN36 ALA37 LYS38 GLN39 LEU40 PHE41 ARG42 LYS43 LEU44 ASN45 GLU46 GLN47 SER48 PRO49 THR50 ARG51 CYS52 THR53 LEU54 GLU55 ALA56 GLY57 ALA58 MET59 THR60 PHE61 HIS62 TYR63 ILE64 ILE65 GLU66 GLN67 GLY68 VAL69 CYS70 TYR71 LEU72 VAL73 LEU74 CYS75 GLU76 ALA77 ALA78 PHE79 PRO80 LYS81 LYS82 LEU83 ALA84 PHE85 ALA86 TYR87 LEU88 GLU89 ASP90 LEU91 HIS92 SER93 GLU94 PHE95 ASP96 GLU97 GLN98 HIS99 GLY100 LYS101 LYS102 VAL103 PRO104 THR105 VAL106 SER107 ARG108 PRO109 TYR110 SER111 PHE112 ILE113 GLU114 PHE115 ASP116 THR117 PHE118 ILE119 GLN120 LYS121 THR122 LYS123 LYS124 LEU125 TYR126 ILE127 ASP128 SER129 ARG130 ALA131 ARG132 ILE148 MET149 VAL150 ALA151 ASN152 ILE153 GLU154 GLU155 VAL156 LEU157
Unit 4 THR502 ASP503 ILE504 GLU505 MET506 ASN507 ARG508
Ligands
Unit 5 ZN765
Unit 6 ZN1094
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany