3EDX - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE W215A/E217A MUTANT OF MURINE THROMB
• Keywords: SERINE PROTEASE, ACUTE PHASE, BLOOD COAGULATION, CLEAVAGE ON BASIC RESIDUES, GAMMA-CARBOXYGLUTAMIC ACID, GLYCOPROTEIN, H KRINGLE, PROTEASE, ZYMOGEN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3EDX	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THROMBIN LIGHT CHAIN	A	42	339	0
2	Protein	THROMBIN HEAVY CHAIN	B	258	2097	0
3	Protein	THROMBIN LIGHT CHAIN	C	42	339	0
4	Protein	THROMBIN HEAVY CHAIN	D	258	2097	0
5	Protein	THROMBIN LIGHT CHAIN	E	42	339	0
6	Protein	THROMBIN HEAVY CHAIN	F	258	2097	0
7	Ligand	THROMBIN HEAVY CHAIN	B	3	0	24
8	Ligand	THROMBIN HEAVY CHAIN	D	4	0	29
9	Ligand	THROMBIN HEAVY CHAIN	F	3	0	24
10	Water			227	0	227
total				1137	7308	304

Proteins

Unit 1	CYS 1 ASP 1A ALA 1B GLU 1C GLY 1D LEU 1E GLY 1F PHE 1G THR 1H LYS 1I GLU 1J ASN 1K PHE 1L PHE 1M THR 1N HIS 1O PHE 1P GLY 2 LEU 3 ARG 4 PRO 5 LEU 6 PHE 7 GLU 8 LYS 9 LYS 10 SER 11 LEU 12 LYS 13 ASP 14 THR 14A THR 14B GLU 14C LYS 14D GLU 14E LEU 14F LEU 14G ASP 14H SER 14I TYR 14J ILE 14K ASP 14L
Unit 2	ILE 16 VAL 17 GLU 18 GLY 19 TRP 20 ASP 21 ALA 22 GLU 23 LYS 24 GLY 25 ILE 26 ALA 27 PRO 28 TRP 29 GLN 30 VAL 31 MET 32 LEU 33 PHE 34 ARG 35 LYS 36 SER 36A PRO 37 GLN 38 GLU 39 LEU 40 LEU 41 CYS 42 GLY 43 ALA 44 SER 45 LEU 46 ILE 47 SER 48 ASP 49 ARG 50 TRP 51 VAL 52 LEU 53 THR 54 ALA 55 ALA 56 HIS 57 CYS 58 ILE 59 LEU 60 TYR 60A PRO 60B PRO 60C TRP 60D ASP 60E LYS 60F ASN 60G PHE 60H THR 60I GLU 61 ASN 62 ASP 63 LEU 64 LEU 65 VAL 66 ARG 67 ILE 68 GLY 69 LYS 70 HIS 71 SER 72 ARG 73 THR 74 ARG 75 TYR 76 GLU 77 ARG 77A ASN 78 VAL 79 GLU 80 LYS 81 ILE 82 SER 83 MET 84 LEU 85 GLU 86 LYS 87 ILE 88 TYR 89 VAL 90 HIS 91 PRO 92 ARG 93 TYR 94 ASN 95 TRP 96 ARG 97 GLU 97A ASN 98 LEU 99 ASP 100 ARG 101 ASP 102 ILE 103 ALA 104 LEU 105 LEU 106 LYS 107 LEU 108 LYS 109 LYS 110 PRO 111 VAL 112 PRO 113 PHE 114 SER 115 ASP 116 TYR 117 ILE 118 HIS 119 PRO 120 VAL 121 CYS 122 LEU 123 PRO 124 ASP 125 LYS 126 GLN 127 THR 128 VAL 129 THR 129A SER 129B LEU 129C LEU 130 ARG 131 ALA 132 GLY 133 TYR 134 LYS 135 GLY 136 ARG 137 VAL 138 THR 139 GLY 140 TRP 141 GLY 142 ASN 143 LEU 144 ARG 145 GLU 146 THR 147 TRP 148 THR 149 THR 149A ASN 149B ILE 149C ASN 149D GLU 149E ILE 150 GLN 151 PRO 152 SER 153 VAL 154 LEU 155 GLN 156 VAL 157 VAL 158 ASN 159 LEU 160 PRO 161 ILE 162 VAL 163 GLU 164 ARG 165 PRO 166 VAL 167 CYS 168 LYS 169 ALA 170 SER 171 THR 172 ARG 173 ILE 174 ARG 175 ILE 176 THR 177 ASP 178 ASN 179 MET 180 PHE 181 CYS 182 ALA 183 GLY 184 PHE 184A LYS 185 VAL 186 ASN 186A ASP 186B THR 186C LYS 186D ARG 187 GLY 188 ASP 189 ALA 190 CYS 191 GLU 192 GLY 193 ASP 194 SER 195 GLY 196 GLY 197 PRO 198 PHE 199 VAL 200 MET 201 LYS 202 SER 203 PRO 204 PHE 204A ASN 204B ASN 205 ARG 206 TRP 207 TYR 208 GLN 209 MET 210 GLY 211 ILE 212 VAL 213 SER 214 ALA 215 GLY 216 ALA 217 GLY 219 CYS 220 ASP 221 ARG 221A LYS 222 GLY 223 LYS 224 TYR 225 GLY 226 PHE 227 TYR 228 THR 229 HIS 230 VAL 231 PHE 232 ARG 233 LEU 234 LYS 235 ARG 236 TRP 237 ILE 238 GLN 239 LYS 240 VAL 241 ILE 242 ASP 243 GLN 244 PHE 245 GLY 246
Unit 3	CYS 1 ASP 1A ALA 1B GLU 1C GLY 1D LEU 1E GLY 1F PHE 1G THR 1H LYS 1I GLU 1J ASN 1K PHE 1L PHE 1M THR 1N HIS 1O PHE 1P GLY 2 LEU 3 ARG 4 PRO 5 LEU 6 PHE 7 GLU 8 LYS 9 LYS 10 SER 11 LEU 12 LYS 13 ASP 14 THR 14A THR 14B GLU 14C LYS 14D GLU 14E LEU 14F LEU 14G ASP 14H SER 14I TYR 14J ILE 14K ASP 14L
Unit 4	ILE 16 VAL 17 GLU 18 GLY 19 TRP 20 ASP 21 ALA 22 GLU 23 LYS 24 GLY 25 ILE 26 ALA 27 PRO 28 TRP 29 GLN 30 VAL 31 MET 32 LEU 33 PHE 34 ARG 35 LYS 36 SER 36A PRO 37 GLN 38 GLU 39 LEU 40 LEU 41 CYS 42 GLY 43 ALA 44 SER 45 LEU 46 ILE 47 SER 48 ASP 49 ARG 50 TRP 51 VAL 52 LEU 53 THR 54 ALA 55 ALA 56 HIS 57 CYS 58 ILE 59 LEU 60 TYR 60A PRO 60B PRO 60C TRP 60D ASP 60E LYS 60F ASN 60G PHE 60H THR 60I GLU 61 ASN 62 ASP 63 LEU 64 LEU 65 VAL 66 ARG 67 ILE 68 GLY 69 LYS 70 HIS 71 SER 72 ARG 73 THR 74 ARG 75 TYR 76 GLU 77 ARG 77A ASN 78 VAL 79 GLU 80 LYS 81 ILE 82 SER 83 MET 84 LEU 85 GLU 86 LYS 87 ILE 88 TYR 89 VAL 90 HIS 91 PRO 92 ARG 93 TYR 94 ASN 95 TRP 96 ARG 97 GLU 97A ASN 98 LEU 99 ASP 100 ARG 101 ASP 102 ILE 103 ALA 104 LEU 105 LEU 106 LYS 107 LEU 108 LYS 109 LYS 110 PRO 111 VAL 112 PRO 113 PHE 114 SER 115 ASP 116 TYR 117 ILE 118 HIS 119 PRO 120 VAL 121 CYS 122 LEU 123 PRO 124 ASP 125 LYS 126 GLN 127 THR 128 VAL 129 THR 129A SER 129B LEU 129C LEU 130 ARG 131 ALA 132 GLY 133 TYR 134 LYS 135 GLY 136 ARG 137 VAL 138 THR 139 GLY 140 TRP 141 GLY 142 ASN 143 LEU 144 ARG 145 GLU 146 THR 147 TRP 148 THR 149 THR 149A ASN 149B ILE 149C ASN 149D GLU 149E ILE 150 GLN 151 PRO 152 SER 153 VAL 154 LEU 155 GLN 156 VAL 157 VAL 158 ASN 159 LEU 160 PRO 161 ILE 162 VAL 163 GLU 164 ARG 165 PRO 166 VAL 167 CYS 168 LYS 169 ALA 170 SER 171 THR 172 ARG 173 ILE 174 ARG 175 ILE 176 THR 177 ASP 178 ASN 179 MET 180 PHE 181 CYS 182 ALA 183 GLY 184 PHE 184A LYS 185 VAL 186 ASN 186A ASP 186B THR 186C LYS 186D ARG 187 GLY 188 ASP 189 ALA 190 CYS 191 GLU 192 GLY 193 ASP 194 SER 195 GLY 196 GLY 197 PRO 198 PHE 199 VAL 200 MET 201 LYS 202 SER 203 PRO 204 PHE 204A ASN 204B ASN 205 ARG 206 TRP 207 TYR 208 GLN 209 MET 210 GLY 211 ILE 212 VAL 213 SER 214 ALA 215 GLY 216 ALA 217 GLY 219 CYS 220 ASP 221 ARG 221A LYS 222 GLY 223 LYS 224 TYR 225 GLY 226 PHE 227 TYR 228 THR 229 HIS 230 VAL 231 PHE 232 ARG 233 LEU 234 LYS 235 ARG 236 TRP 237 ILE 238 GLN 239 LYS 240 VAL 241 ILE 242 ASP 243 GLN 244 PHE 245 GLY 246
Unit 5	CYS 1 ASP 1A ALA 1B GLU 1C GLY 1D LEU 1E GLY 1F PHE 1G THR 1H LYS 1I GLU 1J ASN 1K PHE 1L PHE 1M THR 1N HIS 1O PHE 1P GLY 2 LEU 3 ARG 4 PRO 5 LEU 6 PHE 7 GLU 8 LYS 9 LYS 10 SER 11 LEU 12 LYS 13 ASP 14 THR 14A THR 14B GLU 14C LYS 14D GLU 14E LEU 14F LEU 14G ASP 14H SER 14I TYR 14J ILE 14K ASP 14L
Unit 6	ILE 16 VAL 17 GLU 18 GLY 19 TRP 20 ASP 21 ALA 22 GLU 23 LYS 24 GLY 25 ILE 26 ALA 27 PRO 28 TRP 29 GLN 30 VAL 31 MET 32 LEU 33 PHE 34 ARG 35 LYS 36 SER 36A PRO 37 GLN 38 GLU 39 LEU 40 LEU 41 CYS 42 GLY 43 ALA 44 SER 45 LEU 46 ILE 47 SER 48 ASP 49 ARG 50 TRP 51 VAL 52 LEU 53 THR 54 ALA 55 ALA 56 HIS 57 CYS 58 ILE 59 LEU 60 TYR 60A PRO 60B PRO 60C TRP 60D ASP 60E LYS 60F ASN 60G PHE 60H THR 60I GLU 61 ASN 62 ASP 63 LEU 64 LEU 65 VAL 66 ARG 67 ILE 68 GLY 69 LYS 70 HIS 71 SER 72 ARG 73 THR 74 ARG 75 TYR 76 GLU 77 ARG 77A ASN 78 VAL 79 GLU 80 LYS 81 ILE 82 SER 83 MET 84 LEU 85 GLU 86 LYS 87 ILE 88 TYR 89 VAL 90 HIS 91 PRO 92 ARG 93 TYR 94 ASN 95 TRP 96 ARG 97 GLU 97A ASN 98 LEU 99 ASP 100 ARG 101 ASP 102 ILE 103 ALA 104 LEU 105 LEU 106 LYS 107 LEU 108 LYS 109 LYS 110 PRO 111 VAL 112 PRO 113 PHE 114 SER 115 ASP 116 TYR 117 ILE 118 HIS 119 PRO 120 VAL 121 CYS 122 LEU 123 PRO 124 ASP 125 LYS 126 GLN 127 THR 128 VAL 129 THR 129A SER 129B LEU 129C LEU 130 ARG 131 ALA 132 GLY 133 TYR 134 LYS 135 GLY 136 ARG 137 VAL 138 THR 139 GLY 140 TRP 141 GLY 142 ASN 143 LEU 144 ARG 145 GLU 146 THR 147 TRP 148 THR 149 THR 149A ASN 149B ILE 149C ASN 149D GLU 149E ILE 150 GLN 151 PRO 152 SER 153 VAL 154 LEU 155 GLN 156 VAL 157 VAL 158 ASN 159 LEU 160 PRO 161 ILE 162 VAL 163 GLU 164 ARG 165 PRO 166 VAL 167 CYS 168 LYS 169 ALA 170 SER 171 THR 172 ARG 173 ILE 174 ARG 175 ILE 176 THR 177 ASP 178 ASN 179 MET 180 PHE 181 CYS 182 ALA 183 GLY 184 PHE 184A LYS 185 VAL 186 ASN 186A ASP 186B THR 186C LYS 186D ARG 187 GLY 188 ASP 189 ALA 190 CYS 191 GLU 192 GLY 193 ASP 194 SER 195 GLY 196 GLY 197 PRO 198 PHE 199 VAL 200 MET 201 LYS 202 SER 203 PRO 204 PHE 204A ASN 204B ASN 205 ARG 206 TRP 207 TYR 208 GLN 209 MET 210 GLY 211 ILE 212 VAL 213 SER 214 ALA 215 GLY 216 ALA 217 GLY 219 CYS 220 ASP 221 ARG 221A LYS 222 GLY 223 LYS 224 TYR 225 GLY 226 PHE 227 TYR 228 THR 229 HIS 230 VAL 231 PHE 232 ARG 233 LEU 234 LYS 235 ARG 236 TRP 237 ILE 238 GLN 239 LYS 240 VAL 241 ILE 242 ASP 243 GLN 244 PHE 245 GLY 246

Ligands

Unit 7	SO4 303 SO4 307 NAG 401
Unit 8	SO4 302 SO4 304 SO4 306 NAG 401
Unit 9	SO4 301 SO4 305 NAG 401