3EDK - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL BASE FOR CYCLODEXTRIN HYDROLYSIS
• Keywords: GAMMA-CYCLODEXTRIN COMPLEX, GLYCOSIDASE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3EDK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CYCLOMALTODEXTRINASE	A	597	4770	0
2	Protein	CYCLOMALTODEXTRINASE	B	597	4770	0
3	Ligand		C	8	0	88
4	Ligand		D	8	0	88
5	Ligand	CYCLOMALTODEXTRINASE	A	4	0	14
6	Ligand	CYCLOMALTODEXTRINASE	B	4	0	14
7	Water			1105	0	1105
total				2323	9540	1309

Proteins

Unit 1

PRO 3 THR 4 ALA 5 ILE 6 GLU 7 HIS 8 MET 9 GLU 10 PRO 11 PRO 12 PHE 13 TRP 14 TRP 15 ALA 16 GLY 17 MET 18 GLN 19 HIS 20 LYS 21 GLY 22 LEU 23 GLN 24 LEU 25 MET 26 VAL 27 HIS 28 GLY 29 ARG 30 ASP 31 ILE 32 GLY 33 ARG 34 MET 35 GLU 36 ALA 37 ALA 38 LEU 39 ASP 40 TYR 41 PRO 42 GLY 43 VAL 44 ARG 45 LEU 46 VAL 47 SER 48 PRO 49 THR 50 ARG 51 VAL 52 PRO 53 ASN 54 ALA 55 ASN 56 TYR 57 LEU 58 PHE 59 VAL 60 ASP 61 LEU 62 GLU 63 ILE 64 GLY 65 PRO 66 GLU 67 ALA 68 GLN 69 PRO 70 GLY 71 SER 72 PHE 73 ASP 74 ILE 75 VAL 76 PHE 77 LYS 78 GLY 79 ASP 80 GLY 81 ARG 82 SER 83 GLU 84 ARG 85 TYR 86 ARG 87 TYR 88 ARG 89 LEU 90 LEU 91 ALA 92 ARG 93 GLU 94 GLN 95 GLY 96 SER 97 ALA 98 GLN 99 ARG 100 GLN 101 GLY 102 PHE 103 GLY 104 PRO 105 GLY 106 ASP 107 ALA 108 ILE 109 TYR 110 GLN 111 ILE 112 MET 113 PRO 114 ASP 115 ARG 116 PHE 117 ALA 118 ASN 119 GLY 120 ASP 121 PRO 122 SER 123 ASN 124 ASP 125 ASN 126 VAL 127 ALA 128 GLY 129 MET 130 ARG 131 GLU 132 GLN 133 ALA 134 ASP 135 ARG 136 ARG 137 HIS 138 GLY 139 GLY 140 GLY 141 ARG 142 HIS 143 GLY 144 GLY 145 ASP 146 ILE 147 ARG 148 GLY 149 THR 150 ILE 151 ASP 152 HIS 153 LEU 154 ASP 155 TYR 156 ILE 157 ALA 158 GLY 159 LEU 160 GLY 161 PHE 162 THR 163 GLN 164 LEU 165 TRP 166 PRO 167 THR 168 PRO 169 LEU 170 VAL 171 GLU 172 ASN 173 ASP 174 ALA 175 ALA 176 ALA 177 TYR 178 SER 179 TYR 180 HIS 181 GLY 182 TYR 183 ALA 184 ALA 185 THR 186 ASP 187 HIS 188 TYR 189 ARG 190 ILE 191 ASP 192 PRO 193 ARG 194 TYR 195 GLY 196 SER 197 ASN 198 GLU 199 ASP 200 PHE 201 VAL 202 ARG 203 LEU 204 SER 205 THR 206 GLU 207 ALA 208 ARG 209 LYS 210 ARG 211 GLY 212 MET 213 GLY 214 LEU 215 ILE 216 GLN 217 ASP 218 VAL 219 VAL 220 LEU 221 SER 222 HIS 223 ILE 224 GLY 225 LYS 226 HIS 227 HIS 228 TRP 229 TRP 230 MET 231 LYS 232 ASP 233 LEU 234 PRO 235 THR 236 PRO 237 ASP 238 TRP 239 ILE 240 ASN 241 TYR 242 GLY 243 GLY 244 LYS 245 PHE 246 VAL 247 PRO 248 THR 249 GLN 250 HIS 251 HIS 252 ARG 253 VAL 254 ALA 255 VAL 256 GLN 257 ASP 258 PRO 259 TYR 260 ALA 261 ALA 262 GLN 263 ALA 264 ASP 265 SER 266 GLU 267 ASN 268 PHE 269 THR 270 LYS 271 GLY 272 TRP 273 PHE 274 VAL 275 GLU 276 GLY 277 MET 278 PRO 279 ASP 280 LEU 281 ASN 282 GLN 283 THR 284 ASN 285 PRO 286 LEU 287 VAL 288 ALA 289 ASN 290 TYR 291 LEU 292 ILE 293 GLN 294 ASN 295 ASN 296 ILE 297 TRP 298 TRP 299 ILE 300 GLU 301 TYR 302 ALA 303 GLY 304 LEU 305 SER 306 GLY 307 LEU 308 ARG 309 ILE 310 ASP 311 THR 312 TYR 313 GLY 314 TYR 315 SER 316 ASP 317 GLY 318 ALA 319 PHE 320 LEU 321 THR 322 GLU 323 TYR 324 THR 325 ARG 326 ARG 327 LEU 328 MET 329 ALA 330 GLU 331 TYR 332 PRO 333 ARG 334 LEU 335 ASN 336 MET 337 VAL 338 GLY 339 GLN 340 GLU 341 TRP 342 SER 343 THR 344 ARG 345 VAL 346 PRO 347 VAL 348 VAL 349 ALA 350 ARG 351 TRP 352 GLN 353 ARG 354 GLY 355 LYS 356 ALA 357 ASN 358 PHE 359 ASP 360 GLY 361 TYR 362 THR 363 SER 364 HIS 365 LEU 366 PRO 367 SER 368 LEU 369 MET 370 ASP 371 PHE 372 PRO 373 LEU 374 VAL 375 ASP 376 ALA 377 MET 378 ARG 379 ASN 380 ALA 381 LEU 382 SER 383 LYS 384 THR 385 GLY 386 GLU 387 GLU 388 ASN 389 GLY 390 LEU 391 ASN 392 GLU 393 VAL 394 TYR 395 GLU 396 THR 397 LEU 398 SER 399 LEU 400 ASP 401 TYR 402 LEU 403 TYR 404 PRO 405 GLU 406 PRO 407 GLN 408 ASN 409 LEU 410 VAL 411 LEU 412 PHE 413 GLY 414 GLY 415 ASN 416 HIS 417 ASP 418 MET 419 ALA 420 ARG 421 MET 422 PHE 423 SER 424 ALA 425 ALA 426 GLY 427 GLU 428 ASP 429 PHE 430 ASP 431 ARG 432 TRP 433 ARG 434 MET 435 ASN 436 LEU 437 VAL 438 PHE 439 LEU 440 MET 441 THR 442 MET 443 PRO 444 ARG 445 ILE 446 PRO 447 GLN 448 PHE 449 TYR 450 SER 451 GLY 452 ASP 453 GLU 454 ILE 455 LEU 456 MET 457 THR 458 SER 459 THR 460 VAL 461 LYS 462 GLY 463 ARG 464 ASP 465 ASP 466 ALA 467 SER 468 TYR 469 ARG 470 ARG 471 ASP 472 PHE 473 PRO 474 GLY 475 GLY 476 TRP 477 ALA 478 GLY 479 ASP 480 LYS 481 ALA 482 ASN 483 ALA 484 PHE 485 SER 486 GLY 487 ALA 488 GLY 489 LEU 490 THR 491 SER 492 GLN 493 GLN 494 ARG 495 ALA 496 ALA 497 GLN 498 ASP 499 LEU 500 VAL 501 ARG 502 LYS 503 LEU 504 ALA 505 ASN 506 TRP 507 ARG 508 LYS 509 ASN 510 GLN 511 PRO 512 VAL 513 ILE 514 HIS 515 ASN 516 GLY 517 ARG 518 LEU 519 MET 520 HIS 521 PHE 522 GLY 523 PRO 524 GLU 525 GLU 526 ASN 527 THR 528 TRP 529 VAL 530 TYR 531 PHE 532 ARG 533 TYR 534 ASN 535 LYS 536 ASP 537 LYS 538 ARG 539 ILE 540 MET 541 VAL 542 ALA 543 MET 544 ASN 545 ASN 546 ASN 547 ASP 548 LYS 549 PRO 550 MET 551 THR 552 LEU 553 PRO 554 THR 555 ALA 556 ARG 557 PHE 558 GLN 559 GLU 560 MET 561 LEU 562 LYS 563 GLY 564 ALA 565 PRO 566 SER 567 GLY 568 VAL 569 ASP 570 PHE 571 LEU 572 SER 573 GLY 574 LYS 575 THR 576 VAL 577 GLY 578 LEU 579 GLY 580 ARG 581 GLU 582 LEU 583 ARG 584 LEU 585 ALA 586 PRO 587 LYS 588 SER 589 VAL 590 VAL 591 VAL 592 ILE 593 GLU 594 LEU 595 PRO 596 GLY 597 LEU 598 PRO 599

Unit 2

PRO 3 THR 4 ALA 5 ILE 6 GLU 7 HIS 8 MET 9 GLU 10 PRO 11 PRO 12 PHE 13 TRP 14 TRP 15 ALA 16 GLY 17 MET 18 GLN 19 HIS 20 LYS 21 GLY 22 LEU 23 GLN 24 LEU 25 MET 26 VAL 27 HIS 28 GLY 29 ARG 30 ASP 31 ILE 32 GLY 33 ARG 34 MET 35 GLU 36 ALA 37 ALA 38 LEU 39 ASP 40 TYR 41 PRO 42 GLY 43 VAL 44 ARG 45 LEU 46 VAL 47 SER 48 PRO 49 THR 50 ARG 51 VAL 52 PRO 53 ASN 54 ALA 55 ASN 56 TYR 57 LEU 58 PHE 59 VAL 60 ASP 61 LEU 62 GLU 63 ILE 64 GLY 65 PRO 66 GLU 67 ALA 68 GLN 69 PRO 70 GLY 71 SER 72 PHE 73 ASP 74 ILE 75 VAL 76 PHE 77 LYS 78 GLY 79 ASP 80 GLY 81 ARG 82 SER 83 GLU 84 ARG 85 TYR 86 ARG 87 TYR 88 ARG 89 LEU 90 LEU 91 ALA 92 ARG 93 GLU 94 GLN 95 GLY 96 SER 97 ALA 98 GLN 99 ARG 100 GLN 101 GLY 102 PHE 103 GLY 104 PRO 105 GLY 106 ASP 107 ALA 108 ILE 109 TYR 110 GLN 111 ILE 112 MET 113 PRO 114 ASP 115 ARG 116 PHE 117 ALA 118 ASN 119 GLY 120 ASP 121 PRO 122 SER 123 ASN 124 ASP 125 ASN 126 VAL 127 ALA 128 GLY 129 MET 130 ARG 131 GLU 132 GLN 133 ALA 134 ASP 135 ARG 136 ARG 137 HIS 138 GLY 139 GLY 140 GLY 141 ARG 142 HIS 143 GLY 144 GLY 145 ASP 146 ILE 147 ARG 148 GLY 149 THR 150 ILE 151 ASP 152 HIS 153 LEU 154 ASP 155 TYR 156 ILE 157 ALA 158 GLY 159 LEU 160 GLY 161 PHE 162 THR 163 GLN 164 LEU 165 TRP 166 PRO 167 THR 168 PRO 169 LEU 170 VAL 171 GLU 172 ASN 173 ASP 174 ALA 175 ALA 176 ALA 177 TYR 178 SER 179 TYR 180 HIS 181 GLY 182 TYR 183 ALA 184 ALA 185 THR 186 ASP 187 HIS 188 TYR 189 ARG 190 ILE 191 ASP 192 PRO 193 ARG 194 TYR 195 GLY 196 SER 197 ASN 198 GLU 199 ASP 200 PHE 201 VAL 202 ARG 203 LEU 204 SER 205 THR 206 GLU 207 ALA 208 ARG 209 LYS 210 ARG 211 GLY 212 MET 213 GLY 214 LEU 215 ILE 216 GLN 217 ASP 218 VAL 219 VAL 220 LEU 221 SER 222 HIS 223 ILE 224 GLY 225 LYS 226 HIS 227 HIS 228 TRP 229 TRP 230 MET 231 LYS 232 ASP 233 LEU 234 PRO 235 THR 236 PRO 237 ASP 238 TRP 239 ILE 240 ASN 241 TYR 242 GLY 243 GLY 244 LYS 245 PHE 246 VAL 247 PRO 248 THR 249 GLN 250 HIS 251 HIS 252 ARG 253 VAL 254 ALA 255 VAL 256 GLN 257 ASP 258 PRO 259 TYR 260 ALA 261 ALA 262 GLN 263 ALA 264 ASP 265 SER 266 GLU 267 ASN 268 PHE 269 THR 270 LYS 271 GLY 272 TRP 273 PHE 274 VAL 275 GLU 276 GLY 277 MET 278 PRO 279 ASP 280 LEU 281 ASN 282 GLN 283 THR 284 ASN 285 PRO 286 LEU 287 VAL 288 ALA 289 ASN 290 TYR 291 LEU 292 ILE 293 GLN 294 ASN 295 ASN 296 ILE 297 TRP 298 TRP 299 ILE 300 GLU 301 TYR 302 ALA 303 GLY 304 LEU 305 SER 306 GLY 307 LEU 308 ARG 309 ILE 310 ASP 311 THR 312 TYR 313 GLY 314 TYR 315 SER 316 ASP 317 GLY 318 ALA 319 PHE 320 LEU 321 THR 322 GLU 323 TYR 324 THR 325 ARG 326 ARG 327 LEU 328 MET 329 ALA 330 GLU 331 TYR 332 PRO 333 ARG 334 LEU 335 ASN 336 MET 337 VAL 338 GLY 339 GLN 340 GLU 341 TRP 342 SER 343 THR 344 ARG 345 VAL 346 PRO 347 VAL 348 VAL 349 ALA 350 ARG 351 TRP 352 GLN 353 ARG 354 GLY 355 LYS 356 ALA 357 ASN 358 PHE 359 ASP 360 GLY 361 TYR 362 THR 363 SER 364 HIS 365 LEU 366 PRO 367 SER 368 LEU 369 MET 370 ASP 371 PHE 372 PRO 373 LEU 374 VAL 375 ASP 376 ALA 377 MET 378 ARG 379 ASN 380 ALA 381 LEU 382 SER 383 LYS 384 THR 385 GLY 386 GLU 387 GLU 388 ASN 389 GLY 390 LEU 391 ASN 392 GLU 393 VAL 394 TYR 395 GLU 396 THR 397 LEU 398 SER 399 LEU 400 ASP 401 TYR 402 LEU 403 TYR 404 PRO 405 GLU 406 PRO 407 GLN 408 ASN 409 LEU 410 VAL 411 LEU 412 PHE 413 GLY 414 GLY 415 ASN 416 HIS 417 ASP 418 MET 419 ALA 420 ARG 421 MET 422 PHE 423 SER 424 ALA 425 ALA 426 GLY 427 GLU 428 ASP 429 PHE 430 ASP 431 ARG 432 TRP 433 ARG 434 MET 435 ASN 436 LEU 437 VAL 438 PHE 439 LEU 440 MET 441 THR 442 MET 443 PRO 444 ARG 445 ILE 446 PRO 447 GLN 448 PHE 449 TYR 450 SER 451 GLY 452 ASP 453 GLU 454 ILE 455 LEU 456 MET 457 THR 458 SER 459 THR 460 VAL 461 LYS 462 GLY 463 ARG 464 ASP 465 ASP 466 ALA 467 SER 468 TYR 469 ARG 470 ARG 471 ASP 472 PHE 473 PRO 474 GLY 475 GLY 476 TRP 477 ALA 478 GLY 479 ASP 480 LYS 481 ALA 482 ASN 483 ALA 484 PHE 485 SER 486 GLY 487 ALA 488 GLY 489 LEU 490 THR 491 SER 492 GLN 493 GLN 494 ARG 495 ALA 496 ALA 497 GLN 498 ASP 499 LEU 500 VAL 501 ARG 502 LYS 503 LEU 504 ALA 505 ASN 506 TRP 507 ARG 508 LYS 509 ASN 510 GLN 511 PRO 512 VAL 513 ILE 514 HIS 515 ASN 516 GLY 517 ARG 518 LEU 519 MET 520 HIS 521 PHE 522 GLY 523 PRO 524 GLU 525 GLU 526 ASN 527 THR 528 TRP 529 VAL 530 TYR 531 PHE 532 ARG 533 TYR 534 ASN 535 LYS 536 ASP 537 LYS 538 ARG 539 ILE 540 MET 541 VAL 542 ALA 543 MET 544 ASN 545 ASN 546 ASN 547 ASP 548 LYS 549 PRO 550 MET 551 THR 552 LEU 553 PRO 554 THR 555 ALA 556 ARG 557 PHE 558 GLN 559 GLU 560 MET 561 LEU 562 LYS 563 GLY 564 ALA 565 PRO 566 SER 567 GLY 568 VAL 569 ASP 570 PHE 571 LEU 572 SER 573 GLY 574 LYS 575 THR 576 VAL 577 GLY 578 LEU 579 GLY 580 ARG 581 GLU 582 LEU 583 ARG 584 LEU 585 ALA 586 PRO 587 LYS 588 SER 589 VAL 590 VAL 591 VAL 592 ILE 593 GLU 594 LEU 595 PRO 596 GLY 597 LEU 598 PRO 599

Ligands

Unit 3	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7 GLC 8
Unit 4	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7 GLC 8
Unit 5	CA 602 CA 603 GOL 800 GOL 801
Unit 6	CA 602 CA 603 GOL 800 GOL 801