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Title | STRUCTURAL BASE FOR CYCLODEXTRIN HYDROLYSIS | |
Keywords | CONTACT MUTANT, HYDROLASE, GLYCOSIDASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3EDE | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | CYCLOMALTODEXTRINASE | A | 597 | 4770 | 0 |
2 | Protein | CYCLOMALTODEXTRINASE | B | 597 | 4770 | 0 |
3 | Ligand | CYCLOMALTODEXTRINASE | A | 5 | 0 | 20 |
4 | Ligand | CYCLOMALTODEXTRINASE | B | 5 | 0 | 20 |
5 | Water | 1160 | 0 | 1160 | ||
total | 2364 | 9540 | 1200 |
Unit 1 | PRO3 THR4 ALA5 ILE6 GLU7 HIS8 MET9 GLU10 PRO11 PRO12 PHE13 TRP14 TRP15 ALA16 GLY17 MET18 GLN19 HIS20 LYS21 GLY22 LEU23 GLN24 LEU25 MET26 VAL27 HIS28 GLY29 ARG30 ASP31 ILE32 GLY33 ARG34 MET35 GLU36 ALA37 ALA38 LEU39 ASP40 TYR41 PRO42 GLY43 VAL44 ARG45 LEU46 VAL47 SER48 PRO49 THR50 ARG51 VAL52 PRO53 ASN54 ALA55 ASN56 TYR57 LEU58 PHE59 VAL60 ASP61 LEU62 GLU63 ILE64 GLY65 PRO66 GLU67 ALA68 GLN69 PRO70 GLY71 SER72 PHE73 ASP74 ILE75 VAL76 PHE77 LYS78 GLY79 ASP80 GLY81 ARG82 SER83 GLU84 ARG85 TYR86 ARG87 TYR88 ARG89 LEU90 LEU91 ALA92 ARG93 GLU94 GLN95 GLY96 SER97 ALA98 GLN99 ARG100 GLN101 GLY102 PHE103 GLY104 PRO105 GLY106 ASP107 ALA108 ILE109 TYR110 GLN111 ILE112 MET113 PRO114 ASP115 ARG116 PHE117 ALA118 ASN119 GLY120 ASP121 PRO122 SER123 ASN124 ASP125 ASN126 VAL127 ALA128 GLY129 MET130 ARG131 GLU132 GLN133 ALA134 ASP135 ARG136 ARG137 HIS138 GLY139 GLY140 GLY141 ARG142 HIS143 GLY144 GLY145 ASP146 ILE147 ARG148 GLY149 THR150 ILE151 ASP152 HIS153 LEU154 ASP155 TYR156 ILE157 ALA158 GLY159 LEU160 GLY161 PHE162 THR163 GLN164 LEU165 TRP166 PRO167 THR168 PRO169 LEU170 VAL171 GLU172 ASN173 ASP174 ALA175 ALA176 ALA177 TYR178 SER179 TYR180 HIS181 GLY182 TYR183 ALA184 ALA185 THR186 ASP187 HIS188 TYR189 ARG190 ILE191 ASP192 PRO193 ARG194 TYR195 GLY196 SER197 ASN198 GLU199 ASP200 PHE201 VAL202 ARG203 LEU204 SER205 THR206 GLU207 ALA208 ARG209 LYS210 ARG211 GLY212 MET213 GLY214 LEU215 ILE216 GLN217 ASP218 VAL219 VAL220 LEU221 SER222 HIS223 ILE224 GLY225 LYS226 HIS227 HIS228 TRP229 TRP230 MET231 LYS232 ASP233 LEU234 PRO235 THR236 PRO237 ASP238 TRP239 ILE240 ASN241 TYR242 GLY243 GLY244 LYS245 PHE246 VAL247 PRO248 THR249 GLN250 HIS251 HIS252 ARG253 VAL254 ALA255 VAL256 GLN257 ASP258 PRO259 TYR260 ALA261 ALA262 GLN263 ALA264 ASP265 SER266 GLU267 ASN268 PHE269 THR270 LYS271 GLY272 TRP273 PHE274 VAL275 GLU276 GLY277 MET278 PRO279 ASP280 LEU281 ASN282 GLN283 THR284 ASN285 PRO286 LEU287 VAL288 ALA289 ASN290 TYR291 LEU292 ILE293 GLN294 ASN295 ASN296 ILE297 TRP298 TRP299 ILE300 GLU301 TYR302 ALA303 GLY304 LEU305 SER306 GLY307 LEU308 ARG309 ILE310 ASP311 THR312 TYR313 GLY314 TYR315 SER316 ASP317 GLY318 ALA319 PHE320 LEU321 THR322 GLU323 TYR324 THR325 ARG326 ARG327 LEU328 MET329 ALA330 GLU331 TYR332 PRO333 ARG334 LEU335 ASN336 MET337 VAL338 GLY339 GLU340 GLU341 TRP342 SER343 THR344 ARG345 VAL346 PRO347 VAL348 VAL349 ALA350 ARG351 TRP352 GLN353 ARG354 GLY355 LYS356 ALA357 ASN358 PHE359 ASP360 GLY361 TYR362 THR363 SER364 HIS365 LEU366 PRO367 SER368 LEU369 MET370 ASP371 PHE372 PRO373 LEU374 VAL375 ASP376 ALA377 MET378 ARG379 ASN380 ALA381 LEU382 SER383 LYS384 THR385 GLY386 GLU387 GLU388 ASN389 GLY390 LEU391 ASN392 GLU393 VAL394 TYR395 GLU396 THR397 LEU398 SER399 LEU400 ASP401 TYR402 LEU403 TYR404 PRO405 GLU406 PRO407 GLN408 ASN409 LEU410 VAL411 LEU412 PHE413 GLY414 GLY415 ASN416 HIS417 ASP418 MET419 ALA420 ARG421 MET422 PHE423 SER424 ALA425 ALA426 GLY427 GLU428 ASP429 PHE430 ASP431 ARG432 TRP433 ARG434 MET435 ASN436 LEU437 VAL438 PHE439 LEU440 MET441 THR442 MET443 PRO444 ARG445 ILE446 PRO447 GLN448 PHE449 TYR450 SER451 GLY452 ASP453 GLU454 ILE455 LEU456 MET457 THR458 SER459 THR460 VAL461 LYS462 GLY463 ARG464 ASP465 ASP466 ALA467 SER468 TYR469 ARG470 ARG471 ASP472 PHE473 PRO474 GLY475 GLY476 TRP477 ALA478 GLY479 ASP480 LYS481 ALA482 ASN483 ALA484 PHE485 SER486 GLY487 ALA488 GLY489 LEU490 THR491 SER492 GLN493 GLN494 ARG495 ALA496 ALA497 GLN498 ASP499 LEU500 VAL501 ARG502 LYS503 LEU504 ALA505 ASN506 TRP507 ARG508 LYS509 ASN510 GLN511 PRO512 VAL513 ILE514 HIS515 ASN516 GLY517 ARG518 LEU519 MET520 HIS521 PHE522 GLY523 PRO524 GLU525 GLU526 ASN527 THR528 TRP529 VAL530 TYR531 PHE532 ARG533 TYR534 ASN535 LYS536 ASP537 LYS538 ARG539 ILE540 MET541 VAL542 ALA543 MET544 ASN545 ASN546 ASN547 ASP548 LYS549 PRO550 MET551 THR552 LEU553 PRO554 THR555 ALA556 ARG557 PHE558 GLN559 GLU560 MET561 LEU562 LYS563 GLY564 ALA565 PRO566 SER567 GLY568 VAL569 ASP570 PHE571 LEU572 SER573 GLY574 LYS575 THR576 VAL577 GLY578 LEU579 GLY580 ARG581 GLU582 LEU583 ARG584 LEU585 ALA586 PRO587 LYS588 SER589 VAL590 VAL591 VAL592 ILE593 GLU594 LEU595 PRO596 GLY597 LEU598 PRO599 |
Unit 2 | PRO3 THR4 ALA5 ILE6 GLU7 HIS8 MET9 GLU10 PRO11 PRO12 PHE13 TRP14 TRP15 ALA16 GLY17 MET18 GLN19 HIS20 LYS21 GLY22 LEU23 GLN24 LEU25 MET26 VAL27 HIS28 GLY29 ARG30 ASP31 ILE32 GLY33 ARG34 MET35 GLU36 ALA37 ALA38 LEU39 ASP40 TYR41 PRO42 GLY43 VAL44 ARG45 LEU46 VAL47 SER48 PRO49 THR50 ARG51 VAL52 PRO53 ASN54 ALA55 ASN56 TYR57 LEU58 PHE59 VAL60 ASP61 LEU62 GLU63 ILE64 GLY65 PRO66 GLU67 ALA68 GLN69 PRO70 GLY71 SER72 PHE73 ASP74 ILE75 VAL76 PHE77 LYS78 GLY79 ASP80 GLY81 ARG82 SER83 GLU84 ARG85 TYR86 ARG87 TYR88 ARG89 LEU90 LEU91 ALA92 ARG93 GLU94 GLN95 GLY96 SER97 ALA98 GLN99 ARG100 GLN101 GLY102 PHE103 GLY104 PRO105 GLY106 ASP107 ALA108 ILE109 TYR110 GLN111 ILE112 MET113 PRO114 ASP115 ARG116 PHE117 ALA118 ASN119 GLY120 ASP121 PRO122 SER123 ASN124 ASP125 ASN126 VAL127 ALA128 GLY129 MET130 ARG131 GLU132 GLN133 ALA134 ASP135 ARG136 ARG137 HIS138 GLY139 GLY140 GLY141 ARG142 HIS143 GLY144 GLY145 ASP146 ILE147 ARG148 GLY149 THR150 ILE151 ASP152 HIS153 LEU154 ASP155 TYR156 ILE157 ALA158 GLY159 LEU160 GLY161 PHE162 THR163 GLN164 LEU165 TRP166 PRO167 THR168 PRO169 LEU170 VAL171 GLU172 ASN173 ASP174 ALA175 ALA176 ALA177 TYR178 SER179 TYR180 HIS181 GLY182 TYR183 ALA184 ALA185 THR186 ASP187 HIS188 TYR189 ARG190 ILE191 ASP192 PRO193 ARG194 TYR195 GLY196 SER197 ASN198 GLU199 ASP200 PHE201 VAL202 ARG203 LEU204 SER205 THR206 GLU207 ALA208 ARG209 LYS210 ARG211 GLY212 MET213 GLY214 LEU215 ILE216 GLN217 ASP218 VAL219 VAL220 LEU221 SER222 HIS223 ILE224 GLY225 LYS226 HIS227 HIS228 TRP229 TRP230 MET231 LYS232 ASP233 LEU234 PRO235 THR236 PRO237 ASP238 TRP239 ILE240 ASN241 TYR242 GLY243 GLY244 LYS245 PHE246 VAL247 PRO248 THR249 GLN250 HIS251 HIS252 ARG253 VAL254 ALA255 VAL256 GLN257 ASP258 PRO259 TYR260 ALA261 ALA262 GLN263 ALA264 ASP265 SER266 GLU267 ASN268 PHE269 THR270 LYS271 GLY272 TRP273 PHE274 VAL275 GLU276 GLY277 MET278 PRO279 ASP280 LEU281 ASN282 GLN283 THR284 ASN285 PRO286 LEU287 VAL288 ALA289 ASN290 TYR291 LEU292 ILE293 GLN294 ASN295 ASN296 ILE297 TRP298 TRP299 ILE300 GLU301 TYR302 ALA303 GLY304 LEU305 SER306 GLY307 LEU308 ARG309 ILE310 ASP311 THR312 TYR313 GLY314 TYR315 SER316 ASP317 GLY318 ALA319 PHE320 LEU321 THR322 GLU323 TYR324 THR325 ARG326 ARG327 LEU328 MET329 ALA330 GLU331 TYR332 PRO333 ARG334 LEU335 ASN336 MET337 VAL338 GLY339 GLU340 GLU341 TRP342 SER343 THR344 ARG345 VAL346 PRO347 VAL348 VAL349 ALA350 ARG351 TRP352 GLN353 ARG354 GLY355 LYS356 ALA357 ASN358 PHE359 ASP360 GLY361 TYR362 THR363 SER364 HIS365 LEU366 PRO367 SER368 LEU369 MET370 ASP371 PHE372 PRO373 LEU374 VAL375 ASP376 ALA377 MET378 ARG379 ASN380 ALA381 LEU382 SER383 LYS384 THR385 GLY386 GLU387 GLU388 ASN389 GLY390 LEU391 ASN392 GLU393 VAL394 TYR395 GLU396 THR397 LEU398 SER399 LEU400 ASP401 TYR402 LEU403 TYR404 PRO405 GLU406 PRO407 GLN408 ASN409 LEU410 VAL411 LEU412 PHE413 GLY414 GLY415 ASN416 HIS417 ASP418 MET419 ALA420 ARG421 MET422 PHE423 SER424 ALA425 ALA426 GLY427 GLU428 ASP429 PHE430 ASP431 ARG432 TRP433 ARG434 MET435 ASN436 LEU437 VAL438 PHE439 LEU440 MET441 THR442 MET443 PRO444 ARG445 ILE446 PRO447 GLN448 PHE449 TYR450 SER451 GLY452 ASP453 GLU454 ILE455 LEU456 MET457 THR458 SER459 THR460 VAL461 LYS462 GLY463 ARG464 ASP465 ASP466 ALA467 SER468 TYR469 ARG470 ARG471 ASP472 PHE473 PRO474 GLY475 GLY476 TRP477 ALA478 GLY479 ASP480 LYS481 ALA482 ASN483 ALA484 PHE485 SER486 GLY487 ALA488 GLY489 LEU490 THR491 SER492 GLN493 GLN494 ARG495 ALA496 ALA497 GLN498 ASP499 LEU500 VAL501 ARG502 LYS503 LEU504 ALA505 ASN506 TRP507 ARG508 LYS509 ASN510 GLN511 PRO512 VAL513 ILE514 HIS515 ASN516 GLY517 ARG518 LEU519 MET520 HIS521 PHE522 GLY523 PRO524 GLU525 GLU526 ASN527 THR528 TRP529 VAL530 TYR531 PHE532 ARG533 TYR534 ASN535 LYS536 ASP537 LYS538 ARG539 ILE540 MET541 VAL542 ALA543 MET544 ASN545 ASN546 ASN547 ASP548 LYS549 PRO550 MET551 THR552 LEU553 PRO554 THR555 ALA556 ARG557 PHE558 GLN559 GLU560 MET561 LEU562 LYS563 GLY564 ALA565 PRO566 SER567 GLY568 VAL569 ASP570 PHE571 LEU572 SER573 GLY574 LYS575 THR576 VAL577 GLY578 LEU579 GLY580 ARG581 GLU582 LEU583 ARG584 LEU585 ALA586 PRO587 LYS588 SER589 VAL590 VAL591 VAL592 ILE593 GLU594 LEU595 PRO596 GLY597 LEU598 PRO599 |
Unit 3 | CA700 CA701 GOL800 GOL801 GOL802 |
Unit 4 | CA700 CA701 GOL800 GOL801 GOL802 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |