3E54 - Sequence, Chains, Asymmetric and Biological Units

• Title: ARCHAEAL INTRON-ENCODED HOMING ENDONUCLEASE I-VDI141I COMPLE DNA
• Keywords: PROTEIN-DNA COMPLEX, LAGLIDADG, HOMING, ENDONUCLEASE, DNA RECOGNITION, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3E54	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RRNA INTRON-ENCODED ENDONUCLEASE	A	159	1305	0
2	Protein	RRNA INTRON-ENCODED ENDONUCLEASE	B	159	1305	0
3	Other macromolecule	DNA (5'- D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3')	C	13	258	0
4	Other macromolecule		D	9	188	0
5	Other macromolecule	DNA (5'- D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3')	E	13	261	0
6	Other macromolecule		F	9	191	0
7	Ligand	RRNA INTRON-ENCODED ENDONUCLEASE	A	2	0	2
8	Ligand	RRNA INTRON-ENCODED ENDONUCLEASE	B	2	0	2
9	Ligand	DNA (5'- D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3')	C	1	0	1
10	Ligand		D	1	0	3
11	Ligand	DNA (5'- D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3')	E	1	0	3
12	Ligand		F	1	0	3
13	Water			113	0	113
total				483	3508	127

Proteins

Unit 1

GLU 4 GLU 5 ASP 6 PHE 7 LYS 8 GLU 9 GLY 10 TYR 11 ILE 12 LEU 13 GLY 14 PHE 15 ILE 16 GLU 17 ALA 18 GLU 19 GLY 20 SER 21 PHE 22 SER 23 VAL 24 SER 25 ILE 26 LYS 27 PHE 28 GLN 29 ARG 30 ASP 31 VAL 32 PHE 33 GLY 34 GLY 35 VAL 36 ARG 37 LEU 38 ASP 39 PRO 40 VAL 41 PHE 42 SER 43 ILE 44 THR 45 GLN 46 LYS 47 ASN 48 ARG 49 GLU 50 VAL 51 LEU 52 GLU 53 ALA 54 ILE 55 LYS 56 GLU 57 HIS 58 LEU 59 GLY 60 ILE 61 GLY 62 ARG 63 ILE 64 MET 65 GLU 66 LYS 67 ALA 68 GLY 69 GLN 70 PRO 71 ASN 72 THR 73 TYR 74 VAL 75 TYR 76 VAL 77 VAL 78 ASP 79 ASN 80 PHE 81 ASN 82 GLU 83 LEU 84 VAL 85 LYS 86 LEU 87 ILE 88 ASN 89 PHE 90 LEU 91 ASN 92 LYS 93 TYR 94 ALA 95 ASP 96 PHE 97 MET 98 ILE 99 VAL 100 LYS 101 LYS 102 ARG 103 GLN 104 PHE 105 LEU 106 MET 107 PHE 108 ARG 109 GLU 110 ILE 111 ALA 112 ASN 113 GLY 114 LEU 115 VAL 116 ASN 117 GLY 118 GLU 119 HIS 120 LEU 121 HIS 122 ILE 123 ASN 124 GLY 125 LEU 126 LYS 127 ARG 128 LEU 129 VAL 130 LYS 131 LEU 132 ALA 133 TYR 134 GLU 135 LEU 136 THR 137 LYS 138 GLU 139 SER 140 GLU 141 LYS 142 GLY 143 TYR 144 ARG 145 LYS 146 TYR 147 ASP 148 LEU 149 ASN 150 HIS 151 VAL 152 LEU 153 SER 154 ILE 155 ILE 156 ASP 157 LYS 158 TRP 159 ASP 160 LEU 161 GLY 162

Unit 2

GLU 204 GLU 205 ASP 206 PHE 207 LYS 208 GLU 209 GLY 210 TYR 211 ILE 212 LEU 213 GLY 214 PHE 215 ILE 216 GLU 217 ALA 218 GLU 219 GLY 220 SER 221 PHE 222 SER 223 VAL 224 SER 225 ILE 226 LYS 227 PHE 228 GLN 229 ARG 230 ASP 231 VAL 232 PHE 233 GLY 234 GLY 235 VAL 236 ARG 237 LEU 238 ASP 239 PRO 240 VAL 241 PHE 242 SER 243 ILE 244 THR 245 GLN 246 LYS 247 ASN 248 ARG 249 GLU 250 VAL 251 LEU 252 GLU 253 ALA 254 ILE 255 LYS 256 GLU 257 HIS 258 LEU 259 GLY 260 ILE 261 GLY 262 ARG 263 ILE 264 MET 265 GLU 266 LYS 267 ALA 268 GLY 269 GLN 270 PRO 271 ASN 272 THR 273 TYR 274 VAL 275 TYR 276 VAL 277 VAL 278 ASP 279 ASN 280 PHE 281 ASN 282 GLU 283 LEU 284 VAL 285 LYS 286 LEU 287 ILE 288 ASN 289 PHE 290 LEU 291 ASN 292 LYS 293 TYR 294 ALA 295 ASP 296 PHE 297 MET 298 ILE 299 VAL 300 LYS 301 LYS 302 ARG 303 GLN 304 PHE 305 LEU 306 MET 307 PHE 308 ARG 309 GLU 310 ILE 311 ALA 312 ASN 313 GLY 314 LEU 315 VAL 316 ASN 317 GLY 318 GLU 319 HIS 320 LEU 321 HIS 322 ILE 323 ASN 324 GLY 325 LEU 326 LYS 327 ARG 328 LEU 329 VAL 330 LYS 331 LEU 332 ALA 333 TYR 334 GLU 335 LEU 336 THR 337 LYS 338 GLU 339 SER 340 GLU 341 LYS 342 GLY 343 TYR 344 ARG 345 LYS 346 TYR 347 ASP 348 LEU 349 ASN 350 HIS 351 VAL 352 LEU 353 SER 354 ILE 355 ILE 356 ASP 357 LYS 358 TRP 359 ASP 360 LEU 361 GLY 362

Other macromolecules

Unit 3	DC 490 DT 491 DG 492 DA 493 DC 494 DT 495 DC 496 DT 497 DC 498 DT 499 DT 500 DA 501 DA 502
Unit 4	DG 503 DG 504 DT 505 DA 506 DG 507 DC 508 DC 509 DA 510 DA 511
Unit 5	DT 601 DT 602 DG 603 DG 604 DC 605 DT 606 DA 607 DC 608 DC 609 DT 610 DT 611 DA 612 DA 613
Unit 6	DG 614 DA 615 DG 616 DA 617 DG 618 DT 619 DC 620 DA 621 DG 622

Ligands

Unit 7	MG 702 MG 704
Unit 8	MG 701 MG 705
Unit 9	MG 703
Unit 10	EOH 801
Unit 11	EOH 803
Unit 12	EOH 802