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Title | CRYSTAL STRUCTURE OF AN INTERMEDIATE COMPLEX OF T7 RNAP AND | |
Keywords | T7 RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE, TRANSCRIPTIO NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-RNA-DNA CO | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3E2E | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | DNA-DIRECTED RNA POLYMERASE | A | 832 | 6589 | 0 |
2 | RNA | R | 7 | 153 | 0 | |
3 | Other macromolecule | DNA (31-MER) | T | 31 | 633 | 0 |
4 | Other macromolecule | DNA (28-MER) | N | 28 | 565 | 0 |
5 | Water | 73 | 0 | 73 | ||
total | 971 | 7940 | 73 |
Unit 1 | LYS8 ASN9 ASP10 PHE11 SER12 ASP13 ILE14 GLU15 LEU16 ALA17 ALA18 ILE19 PRO20 PHE21 ASN22 THR23 LEU24 ALA25 ASP26 HIS27 TYR28 GLY29 GLU30 ARG31 LEU32 ALA33 ARG34 GLU35 GLN36 LEU37 ALA38 LEU39 GLU40 HIS41 GLU42 SER43 TYR44 GLU45 MET46 GLY47 GLU48 ALA49 ARG50 PHE51 ARG52 LYS53 MET54 PHE55 GLU56 ARG57 LEU73 ILE74 THR75 THR76 LEU77 LEU78 PRO79 LYS80 MET81 ILE82 ALA83 ARG84 ILE85 ASN86 ASP87 TRP88 PHE89 GLU90 GLU91 VAL92 LYS93 ALA94 LYS95 ARG96 GLY97 LYS98 ARG99 PRO100 THR101 ALA102 PHE103 GLN104 PHE105 LEU106 GLN107 GLU108 ILE109 LYS110 PRO111 GLU112 ALA113 VAL114 ALA115 TYR116 ILE117 THR118 ILE119 LYS120 THR121 THR122 LEU123 ALA124 CYS125 LEU126 THR127 SER128 ALA129 ASP130 ASN131 THR132 THR133 VAL134 GLN135 ALA136 VAL137 ALA138 SER139 ALA140 ILE141 GLY142 ARG143 ALA144 ILE145 GLU146 ASP147 GLU148 ALA149 ARG150 PHE151 GLY152 ARG153 ILE154 ARG155 ASP156 LEU157 GLU158 ALA159 LYS160 HIS161 PHE162 LYS163 LYS164 ASN165 VAL166 TYR178 LYS179 LYS180 ALA181 PHE182 MET183 GLN184 VAL185 VAL186 GLU187 ALA188 ASP189 MET190 LEU191 SER192 LYS193 GLY194 LEU195 LEU196 GLY197 GLY198 GLU199 ALA200 TRP201 SER202 SER203 TRP204 HIS205 LYS206 GLU207 ASP208 SER209 ILE210 HIS211 VAL212 GLY213 VAL214 ARG215 CYS216 ILE217 GLU218 MET219 LEU220 ILE221 GLU222 SER223 THR224 GLY225 MET226 VAL227 SER228 LEU229 HIS230 ARG231 GLN232 ASN233 ALA234 GLY235 VAL236 VAL237 GLY238 GLN239 ASP240 SER241 GLU242 THR243 ILE244 GLU245 LEU246 ALA247 PRO248 GLU249 TYR250 ALA251 GLU252 ALA253 ILE254 ILE264 SER265 LEU266 MET267 PHE268 GLN269 PRO270 CYS271 VAL272 VAL273 PRO274 PRO275 LYS276 PRO277 TRP278 THR279 GLY280 ILE281 THR282 GLY283 GLY284 GLY285 TYR286 TRP287 ALA288 ASN289 GLY290 ARG291 ARG292 PRO293 LEU294 ALA295 LEU296 VAL297 ARG298 THR299 HIS300 SER301 LYS302 LYS303 ALA304 LEU305 MET306 ARG307 TYR308 GLU309 ASP310 VAL311 TYR312 MET313 PRO314 GLU315 VAL316 TYR317 LYS318 ALA319 ILE320 ASN321 ILE322 ALA323 GLN324 ASN325 THR326 ALA327 TRP328 LYS329 ILE330 ASN331 LYS332 LYS333 VAL334 LEU335 ALA336 VAL337 ALA338 ASN339 VAL340 ILE341 THR342 LYS343 TRP344 LYS345 HIS346 CYS347 PRO348 VAL349 GLU350 ASP351 ILE352 PRO353 ALA354 ILE355 GLU356 ARG357 GLU358 GLU359 LEU360 PRO361 MET362 LYS363 PRO364 ASP368 MET369 ASN370 PRO371 GLU372 ALA373 LEU374 THR375 ALA376 TRP377 LYS378 ARG379 ALA380 ALA381 ALA382 ALA383 VAL384 TYR385 ARG386 LYS387 ASP388 LYS389 ALA390 ARG391 LYS392 SER393 ARG394 ARG395 ILE396 SER397 LEU398 GLU399 PHE400 MET401 LEU402 GLU403 GLN404 ALA405 ASN406 LYS407 PHE408 ALA409 ASN410 HIS411 LYS412 ALA413 ILE414 TRP415 PHE416 PRO417 TYR418 ASN419 MET420 ASP421 TRP422 ARG423 GLY424 ARG425 VAL426 TYR427 ALA428 VAL429 SER430 MET431 PHE432 ASN433 PRO434 GLN435 GLY436 ASN437 ASP438 MET439 THR440 LYS441 GLY442 LEU443 LEU444 THR445 LEU446 ALA447 LYS448 GLY449 LYS450 PRO451 ILE452 GLY453 LYS454 GLU455 GLY456 TYR457 TYR458 TRP459 LEU460 LYS461 ILE462 HIS463 GLY464 ALA465 ASN466 CYS467 ALA468 GLY469 VAL470 ASP471 LYS472 VAL473 PRO474 PHE475 PRO476 GLU477 ARG478 ILE479 LYS480 PHE481 ILE482 GLU483 GLU484 ASN485 HIS486 GLU487 ASN488 ILE489 MET490 ALA491 CYS492 ALA493 LYS494 SER495 PRO496 LEU497 GLU498 ASN499 THR500 TRP501 TRP502 ALA503 GLU504 GLN505 ASP506 SER507 PRO508 PHE509 CYS510 PHE511 LEU512 ALA513 PHE514 CYS515 PHE516 GLU517 TYR518 ALA519 GLY520 VAL521 GLN522 HIS523 HIS524 GLY525 LEU526 SER527 TYR528 ASN529 CYS530 SER531 LEU532 PRO533 LEU534 ALA535 PHE536 ASP537 GLY538 SER539 CYS540 SER541 GLY542 ILE543 GLN544 HIS545 PHE546 SER547 ALA548 MET549 LEU550 ARG551 ASP552 GLU553 VAL554 GLY555 GLY556 ARG557 ALA558 VAL559 ASN560 LEU561 LEU562 PRO563 SER564 GLU565 THR566 VAL567 GLN568 ASP569 ILE570 TYR571 GLY572 ILE573 VAL574 ALA575 LYS576 LYS577 VAL578 ASN579 GLU580 ILE581 LEU582 GLN583 ALA584 ASP585 ALA586 ILE587 ASN588 GLY589 THR590 ASP591 ASN592 GLU593 VAL594 VAL595 THR596 VAL597 THR598 ILE605 SER606 GLU607 LYS608 VAL609 LYS610 LEU611 GLY612 THR613 LYS614 ALA615 LEU616 ALA617 GLY618 GLN619 TRP620 LEU621 ALA622 TYR623 GLY624 VAL625 THR626 ARG627 SER628 VAL629 THR630 LYS631 ARG632 SER633 VAL634 MET635 THR636 LEU637 ALA638 TYR639 GLY640 SER641 LYS642 GLU643 PHE644 GLY645 PHE646 ARG647 GLN648 GLN649 VAL650 LEU651 GLU652 ASP653 THR654 ILE655 GLN656 PRO657 ALA658 ILE659 ASP660 SER661 GLY662 LYS663 GLY664 LEU665 MET666 PHE667 THR668 GLN669 PRO670 ASN671 GLN672 ALA673 ALA674 GLY675 TYR676 MET677 ALA678 LYS679 LEU680 ILE681 TRP682 GLU683 SER684 VAL685 SER686 VAL687 THR688 VAL689 VAL690 ALA691 ALA692 VAL693 GLU694 ALA695 MET696 ASN697 TRP698 LEU699 LYS700 SER701 ALA702 ALA703 LYS704 LEU705 LEU706 ALA707 ALA708 GLU709 VAL710 LYS711 ASP712 LYS713 LYS714 THR715 GLY716 GLU717 ILE718 LEU719 ARG720 LYS721 ARG722 CYS723 ALA724 VAL725 HIS726 TRP727 VAL728 THR729 PRO730 ASP731 GLY732 PHE733 PRO734 VAL735 TRP736 GLN737 GLU738 TYR739 LYS740 LYS741 PRO742 ILE743 GLN744 THR745 ARG746 LEU747 ASN748 LEU749 MET750 PHE751 LEU752 GLY753 GLN754 PHE755 ARG756 LEU757 GLN758 PRO759 THR760 ILE761 ASN762 THR763 ASN764 LYS765 ASP766 SER767 GLU768 ILE769 ASP770 ALA771 HIS772 LYS773 GLN774 GLU775 SER776 GLY777 ILE778 ALA779 PRO780 ASN781 PHE782 VAL783 HIS784 SER785 GLN786 ASP787 GLY788 SER789 HIS790 LEU791 ARG792 LYS793 THR794 VAL795 VAL796 TRP797 ALA798 HIS799 GLU800 LYS801 TYR802 GLY803 ILE804 GLU805 SER806 PHE807 ALA808 LEU809 ILE810 HIS811 ASP812 SER813 PHE814 GLY815 THR816 ILE817 PRO818 ALA819 ASP820 ALA821 ALA822 ASN823 LEU824 PHE825 LYS826 ALA827 VAL828 ARG829 GLU830 THR831 MET832 VAL833 ASP834 THR835 TYR836 GLU837 SER838 CYS839 ASP840 VAL841 LEU842 ALA843 ASP844 PHE845 TYR846 ASP847 GLN848 PHE849 ALA850 ASP851 GLN852 LEU853 HIS854 GLU855 SER856 GLN857 LEU858 ASP859 LYS860 MET861 PRO862 ALA863 LEU864 PRO865 ALA866 LYS867 GLY868 ASN869 LEU870 ASN871 LEU872 ARG873 ASP874 ILE875 LEU876 GLU877 SER878 ASP879 PHE880 ALA881 PHE882 ALA883 |
Unit 2 | G1 G2 G3 A4 G5 U6 G7 |
Unit 3 | DA1 DG2 DC3 DC4 DG5 DT6 DG7 DC8 DG9 DC10 DA11 DC12 DT13 DC14 DC15 DC16 DT19 DA20 DG21 DT22 DG23 DA24 DG25 DT26 DC27 DG28 DT29 DA30 DT31 DT32 DA33 |
Unit 4 | DT101 DA102 DA103 DT104 DA105 DC106 DG107 DA108 DC109 DT110 DC111 DA112 DC113 DT119 DT120 DC121 DT122 DG123 DG124 DC125 DG126 DC127 DA128 DC129 DG130 DG131 DC132 DT133 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |