3DZD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SIGMA54 ACTIVATOR NTRC4 IN THE INACTIVE STATE
• Keywords: SIGMA43 ACTIVATOR, AAA+ ATPASE, RESPONSE REGULATOR, TRANSCRIPTIONAL ACTIVATOR, ATP-BINDING, NUCLEOTIDE-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DZD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)	A	368	2933	16
2	Protein	TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)	B	368	2933	16
3	Ligand	TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)	A	1	0	27
4	Ligand	TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)	B	2	0	28
5	Water			250	0	250
total				989	5866	337

Proteins

Unit 1

LYS 2 ARG 3 VAL 4 LEU 5 VAL 6 VAL 7 ASP 8 ASP 9 GLU 10 GLU 11 SER 12 ILE 13 THR 14 SER 15 SER 16 LEU 17 SER 18 ALA 19 ILE 20 LEU 21 GLU 22 GLU 23 GLU 24 GLY 25 TYR 26 HIS 27 PRO 28 ASP 29 THR 30 ALA 31 LYS 32 THR 33 LEU 34 ARG 35 GLU 36 ALA 37 GLU 38 LYS 39 LYS 40 ILE 41 LYS 42 GLU 43 LEU 44 PHE 45 PHE 46 PRO 47 VAL 48 ILE 49 VAL 50 LEU 51 ASP 52 VAL 53 TRP 54 MSE 55 PRO 56 ASP 57 GLY 58 ASP 59 GLY 60 VAL 61 ASN 62 PHE 63 ILE 64 ASP 65 PHE 66 ILE 67 LYS 68 GLU 69 ASN 70 SER 71 PRO 72 ASP 73 SER 74 VAL 75 VAL 76 ILE 77 VAL 78 ILE 79 THR 80 GLY 81 HIS 82 GLY 83 SER 84 VAL 85 ASP 86 THR 87 ALA 88 VAL 89 LYS 90 ALA 91 ILE 92 LYS 93 LYS 94 GLY 95 ALA 96 TYR 97 GLU 98 PHE 99 LEU 100 GLU 101 LYS 102 PRO 103 PHE 104 SER 105 VAL 106 GLU 107 ARG 108 PHE 109 LEU 110 LEU 111 THR 112 ILE 113 LYS 114 HIS 115 ALA 116 PHE 117 GLU 118 GLU 119 TYR 120 SER 121 LYS 122 LYS 123 ALA 124 PRO 125 PRO 126 GLN 127 GLU 128 GLU 129 ILE 130 GLU 131 PHE 132 VAL 133 GLY 134 GLU 135 HIS 136 PRO 137 LYS 138 ILE 139 LEU 140 GLU 141 ILE 142 LYS 143 ARG 144 LEU 145 ILE 146 PRO 147 LYS 148 ILE 149 ALA 150 LYS 151 SER 152 LYS 153 ALA 154 PRO 155 VAL 156 LEU 157 ILE 158 THR 159 GLY 160 GLU 161 SER 162 GLY 163 THR 164 GLY 165 LYS 166 GLU 167 ILE 168 VAL 169 ALA 170 ARG 171 LEU 172 ILE 173 HIS 174 ARG 175 TYR 176 SER 177 GLY 178 ARG 179 LYS 180 GLY 181 ALA 182 PHE 183 VAL 184 ASP 185 LEU 186 ASN 187 CYS 188 ALA 189 SER 190 ILE 191 PRO 192 GLN 193 GLU 194 LEU 195 ALA 196 GLU 197 SER 198 GLU 199 LEU 200 PHE 201 GLY 202 HIS 203 GLU 204 LYS 205 GLY 206 ALA 207 PHE 208 THR 209 GLY 210 ALA 211 LEU 212 THR 213 ARG 214 LYS 215 LYS 216 GLY 217 LYS 218 LEU 219 GLU 220 LEU 221 ALA 222 ASP 223 GLN 224 GLY 225 THR 226 LEU 227 PHE 228 LEU 229 ASP 230 GLU 231 VAL 232 GLY 233 GLU 234 LEU 235 ASP 236 GLN 237 ARG 238 VAL 239 GLN 240 ALA 241 LYS 242 LEU 243 LEU 244 ARG 245 VAL 246 LEU 247 GLU 248 THR 249 GLY 250 SER 251 PHE 252 THR 253 ARG 254 LEU 255 GLY 256 GLY 257 ASN 258 GLN 259 LYS 260 ILE 261 GLU 262 VAL 263 ASP 264 ILE 265 ARG 266 VAL 267 ILE 268 SER 269 ALA 270 THR 271 ASN 272 LYS 273 ASN 274 LEU 275 GLU 276 GLU 277 GLU 278 ILE 279 LYS 280 LYS 281 GLY 282 ASN 283 PHE 284 ARG 285 GLU 286 ASP 287 LEU 288 TYR 289 TYR 290 ARG 291 LEU 292 SER 293 VAL 294 PHE 295 GLN 296 ILE 297 TYR 298 LEU 299 PRO 300 PRO 301 LEU 302 ARG 303 GLU 304 ARG 305 GLY 306 LYS 307 ASP 308 VAL 309 ILE 310 LEU 311 LEU 312 ALA 313 GLU 314 TYR 315 PHE 316 LEU 317 LYS 318 LYS 319 PHE 320 ALA 321 LYS 322 GLU 323 TYR 324 LYS 325 LYS 326 ASN 327 CYS 328 PHE 329 GLU 330 LEU 331 SER 332 GLU 333 GLU 334 THR 335 LYS 336 GLU 337 TYR 338 LEU 339 MSE 340 LYS 341 GLN 342 GLU 343 TRP 344 LYS 345 GLY 346 ASN 347 VAL 348 ARG 349 GLU 350 LEU 351 LYS 352 ASN 353 LEU 354 ILE 355 GLU 356 ARG 357 ALA 358 VAL 359 ILE 360 LEU 361 CYS 362 GLU 363 GLY 364 GLU 365 VAL 366 ILE 367 LYS 368 PRO 369

Unit 2

LYS 2 ARG 3 VAL 4 LEU 5 VAL 6 VAL 7 ASP 8 ASP 9 GLU 10 GLU 11 SER 12 ILE 13 THR 14 SER 15 SER 16 LEU 17 SER 18 ALA 19 ILE 20 LEU 21 GLU 22 GLU 23 GLU 24 GLY 25 TYR 26 HIS 27 PRO 28 ASP 29 THR 30 ALA 31 LYS 32 THR 33 LEU 34 ARG 35 GLU 36 ALA 37 GLU 38 LYS 39 LYS 40 ILE 41 LYS 42 GLU 43 LEU 44 PHE 45 PHE 46 PRO 47 VAL 48 ILE 49 VAL 50 LEU 51 ASP 52 VAL 53 TRP 54 MSE 55 PRO 56 ASP 57 GLY 58 ASP 59 GLY 60 VAL 61 ASN 62 PHE 63 ILE 64 ASP 65 PHE 66 ILE 67 LYS 68 GLU 69 ASN 70 SER 71 PRO 72 ASP 73 SER 74 VAL 75 VAL 76 ILE 77 VAL 78 ILE 79 THR 80 GLY 81 HIS 82 GLY 83 SER 84 VAL 85 ASP 86 THR 87 ALA 88 VAL 89 LYS 90 ALA 91 ILE 92 LYS 93 LYS 94 GLY 95 ALA 96 TYR 97 GLU 98 PHE 99 LEU 100 GLU 101 LYS 102 PRO 103 PHE 104 SER 105 VAL 106 GLU 107 ARG 108 PHE 109 LEU 110 LEU 111 THR 112 ILE 113 LYS 114 HIS 115 ALA 116 PHE 117 GLU 118 GLU 119 TYR 120 SER 121 LYS 122 LYS 123 ALA 124 PRO 125 PRO 126 GLN 127 GLU 128 GLU 129 ILE 130 GLU 131 PHE 132 VAL 133 GLY 134 GLU 135 HIS 136 PRO 137 LYS 138 ILE 139 LEU 140 GLU 141 ILE 142 LYS 143 ARG 144 LEU 145 ILE 146 PRO 147 LYS 148 ILE 149 ALA 150 LYS 151 SER 152 LYS 153 ALA 154 PRO 155 VAL 156 LEU 157 ILE 158 THR 159 GLY 160 GLU 161 SER 162 GLY 163 THR 164 GLY 165 LYS 166 GLU 167 ILE 168 VAL 169 ALA 170 ARG 171 LEU 172 ILE 173 HIS 174 ARG 175 TYR 176 SER 177 GLY 178 ARG 179 LYS 180 GLY 181 ALA 182 PHE 183 VAL 184 ASP 185 LEU 186 ASN 187 CYS 188 ALA 189 SER 190 ILE 191 PRO 192 GLN 193 GLU 194 LEU 195 ALA 196 GLU 197 SER 198 GLU 199 LEU 200 PHE 201 GLY 202 HIS 203 GLU 204 LYS 205 GLY 206 ALA 207 PHE 208 THR 209 GLY 210 ALA 211 LEU 212 THR 213 ARG 214 LYS 215 LYS 216 GLY 217 LYS 218 LEU 219 GLU 220 LEU 221 ALA 222 ASP 223 GLN 224 GLY 225 THR 226 LEU 227 PHE 228 LEU 229 ASP 230 GLU 231 VAL 232 GLY 233 GLU 234 LEU 235 ASP 236 GLN 237 ARG 238 VAL 239 GLN 240 ALA 241 LYS 242 LEU 243 LEU 244 ARG 245 VAL 246 LEU 247 GLU 248 THR 249 GLY 250 SER 251 PHE 252 THR 253 ARG 254 LEU 255 GLY 256 GLY 257 ASN 258 GLN 259 LYS 260 ILE 261 GLU 262 VAL 263 ASP 264 ILE 265 ARG 266 VAL 267 ILE 268 SER 269 ALA 270 THR 271 ASN 272 LYS 273 ASN 274 LEU 275 GLU 276 GLU 277 GLU 278 ILE 279 LYS 280 LYS 281 GLY 282 ASN 283 PHE 284 ARG 285 GLU 286 ASP 287 LEU 288 TYR 289 TYR 290 ARG 291 LEU 292 SER 293 VAL 294 PHE 295 GLN 296 ILE 297 TYR 298 LEU 299 PRO 300 PRO 301 LEU 302 ARG 303 GLU 304 ARG 305 GLY 306 LYS 307 ASP 308 VAL 309 ILE 310 LEU 311 LEU 312 ALA 313 GLU 314 TYR 315 PHE 316 LEU 317 LYS 318 LYS 319 PHE 320 ALA 321 LYS 322 GLU 323 TYR 324 LYS 325 LYS 326 ASN 327 CYS 328 PHE 329 GLU 330 LEU 331 SER 332 GLU 333 GLU 334 THR 335 LYS 336 GLU 337 TYR 338 LEU 339 MSE 340 LYS 341 GLN 342 GLU 343 TRP 344 LYS 345 GLY 346 ASN 347 VAL 348 ARG 349 GLU 350 LEU 351 LYS 352 ASN 353 LEU 354 ILE 355 GLU 356 ARG 357 ALA 358 VAL 359 ILE 360 LEU 361 CYS 362 GLU 363 GLY 364 GLU 365 VAL 366 ILE 367 LYS 368 PRO 369

Ligands

Unit 3	ADP 370
Unit 4	NA 1 ADP 370