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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE A-SUBUNIT OF THE AB5 TOXIN FROM E. NEU5GC-2,3GAL-1,3GLCNAC
Keywords TOXIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3DWQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SUBTILASE CYTOTOXIN, SUBUNIT B  A 116 897 0
2  Protein   SUBTILASE CYTOTOXIN, SUBUNIT B  B 117 905 0
3  Protein   SUBTILASE CYTOTOXIN, SUBUNIT B  C 120 928 0
4  Protein   SUBTILASE CYTOTOXIN, SUBUNIT B  D 117 905 0
5  Protein   SUBTILASE CYTOTOXIN, SUBUNIT B  E 116 897 0
6  Ligand    F 3 0 46
7  Ligand    G 3 0 46
8  Ligand    H 3 0 46
9  Ligand    I 3 0 46
10  Ligand   SUBTILASE CYTOTOXIN, SUBUNIT B  A 3 0 23
11  Ligand   SUBTILASE CYTOTOXIN, SUBUNIT B  B 1 0 16
12  Ligand   SUBTILASE CYTOTOXIN, SUBUNIT B  C 2 0 7
13  Ligand   SUBTILASE CYTOTOXIN, SUBUNIT B  D 4 0 39
14  Ligand   SUBTILASE CYTOTOXIN, SUBUNIT B  E 3 0 23
15 Water     556 0 556
total       1167 4532 848

Proteins
Unit 1 GLU1 TRP2 THR3 GLY4 ASP5 ALA6 ARG7 ASP8 GLY9 MET10 PHE11 SER12 GLY13 VAL14 VAL15 ILE16 THR17 GLN18 PHE19 HIS20 THR21 GLY22 GLN23 ILE24 ASP25 ASN26 LYS27 PRO28 TYR29 PHE30 CYS31 ILE32 GLU33 GLY34 LYS35 GLN36 SER37 ALA38 GLY39 SER40 SER41 ILE42 SER43 ALA44 CYS45 SER46 MET47 LYS48 ASN49 SER50 SER51 VAL52 TRP53 GLY54 ALA55 SER56 PHE57 SER58 THR59 LEU60 TYR61 ASN62 GLN63 ALA64 LEU65 TYR66 PHE67 TYR68 THR69 THR70 GLY71 GLN72 PRO73 VAL74 ARG75 ILE76 TYR77 TYR78 GLU79 PRO80 GLY81 VAL82 TRP83 THR84 TYR85 PRO86 PRO87 PHE88 VAL89 LYS90 ALA91 LEU92 THR93 SER94 ASN95 ALA96 LEU97 VAL98 GLY99 LEU100 SER101 THR102 CYS103 THR104 THR105 SER106 THR107 GLU108 CYS109 PHE110 GLY111 PRO112 ASP113 ARG114 LYS115 LYS116
Unit 2 GLU1 TRP2 THR3 GLY4 ASP5 ALA6 ARG7 ASP8 GLY9 MET10 PHE11 SER12 GLY13 VAL14 VAL15 ILE16 THR17 GLN18 PHE19 HIS20 THR21 GLY22 GLN23 ILE24 ASP25 ASN26 LYS27 PRO28 TYR29 PHE30 CYS31 ILE32 GLU33 GLY34 LYS35 GLN36 SER37 ALA38 GLY39 SER40 SER41 ILE42 SER43 ALA44 CYS45 SER46 MET47 LYS48 ASN49 SER50 SER51 VAL52 TRP53 GLY54 ALA55 SER56 PHE57 SER58 THR59 LEU60 TYR61 ASN62 GLN63 ALA64 LEU65 TYR66 PHE67 TYR68 THR69 THR70 GLY71 GLN72 PRO73 VAL74 ARG75 ILE76 TYR77 TYR78 GLU79 PRO80 GLY81 VAL82 TRP83 THR84 TYR85 PRO86 PRO87 PHE88 VAL89 LYS90 ALA91 LEU92 THR93 SER94 ASN95 ALA96 LEU97 VAL98 GLY99 LEU100 SER101 THR102 CYS103 THR104 THR105 SER106 THR107 GLU108 CYS109 PHE110 GLY111 PRO112 ASP113 ARG114 LYS115 LYS116 ASN117
Unit 3 GLU1 TRP2 THR3 GLY4 ASP5 ALA6 ARG7 ASP8 GLY9 MET10 PHE11 SER12 GLY13 VAL14 VAL15 ILE16 THR17 GLN18 PHE19 HIS20 THR21 GLY22 GLN23 ILE24 ASP25 ASN26 LYS27 PRO28 TYR29 PHE30 CYS31 ILE32 GLU33 GLY34 LYS35 GLN36 SER37 ALA38 GLY39 SER40 SER41 ILE42 SER43 ALA44 CYS45 SER46 MET47 LYS48 ASN49 SER50 SER51 VAL52 TRP53 GLY54 ALA55 SER56 PHE57 SER58 THR59 LEU60 TYR61 ASN62 GLN63 ALA64 LEU65 TYR66 PHE67 TYR68 THR69 THR70 GLY71 GLN72 PRO73 VAL74 ARG75 ILE76 TYR77 TYR78 GLU79 PRO80 GLY81 VAL82 TRP83 THR84 TYR85 PRO86 PRO87 PHE88 VAL89 LYS90 ALA91 LEU92 THR93 SER94 ASN95 ALA96 LEU97 VAL98 GLY99 LEU100 SER101 THR102 CYS103 THR104 THR105 SER106 THR107 GLU108 CYS109 PHE110 GLY111 PRO112 ASP113 ARG114 LYS115 LYS116 ASN117 SER118 LEU119 GLU120
Unit 4 GLU1 TRP2 THR3 GLY4 ASP5 ALA6 ARG7 ASP8 GLY9 MET10 PHE11 SER12 GLY13 VAL14 VAL15 ILE16 THR17 GLN18 PHE19 HIS20 THR21 GLY22 GLN23 ILE24 ASP25 ASN26 LYS27 PRO28 TYR29 PHE30 CYS31 ILE32 GLU33 GLY34 LYS35 GLN36 SER37 ALA38 GLY39 SER40 SER41 ILE42 SER43 ALA44 CYS45 SER46 MET47 LYS48 ASN49 SER50 SER51 VAL52 TRP53 GLY54 ALA55 SER56 PHE57 SER58 THR59 LEU60 TYR61 ASN62 GLN63 ALA64 LEU65 TYR66 PHE67 TYR68 THR69 THR70 GLY71 GLN72 PRO73 VAL74 ARG75 ILE76 TYR77 TYR78 GLU79 PRO80 GLY81 VAL82 TRP83 THR84 TYR85 PRO86 PRO87 PHE88 VAL89 LYS90 ALA91 LEU92 THR93 SER94 ASN95 ALA96 LEU97 VAL98 GLY99 LEU100 SER101 THR102 CYS103 THR104 THR105 SER106 THR107 GLU108 CYS109 PHE110 GLY111 PRO112 ASP113 ARG114 LYS115 LYS116 ASN117
Unit 5 GLU1 TRP2 THR3 GLY4 ASP5 ALA6 ARG7 ASP8 GLY9 MET10 PHE11 SER12 GLY13 VAL14 VAL15 ILE16 THR17 GLN18 PHE19 HIS20 THR21 GLY22 GLN23 ILE24 ASP25 ASN26 LYS27 PRO28 TYR29 PHE30 CYS31 ILE32 GLU33 GLY34 LYS35 GLN36 SER37 ALA38 GLY39 SER40 SER41 ILE42 SER43 ALA44 CYS45 SER46 MET47 LYS48 ASN49 SER50 SER51 VAL52 TRP53 GLY54 ALA55 SER56 PHE57 SER58 THR59 LEU60 TYR61 ASN62 GLN63 ALA64 LEU65 TYR66 PHE67 TYR68 THR69 THR70 GLY71 GLN72 PRO73 VAL74 ARG75 ILE76 TYR77 TYR78 GLU79 PRO80 GLY81 VAL82 TRP83 THR84 TYR85 PRO86 PRO87 PHE88 VAL89 LYS90 ALA91 LEU92 THR93 SER94 ASN95 ALA96 LEU97 VAL98 GLY99 LEU100 SER101 THR102 CYS103 THR104 THR105 SER106 THR107 GLU108 CYS109 PHE110 GLY111 PRO112 ASP113 ARG114 LYS115 LYS116

Ligands
Unit 6 NGA1 GAL2 NGC3
Unit 7 NGA1 GAL2 NGC3
Unit 8 NGA1 GAL2 NGC3
Unit 9 NGA1 GAL2 NGC3
Unit 10 POL130 AZI131 1PE132
Unit 11 1PE127
Unit 12 POL130 AZI131
Unit 13 POL130 AZI131 1PE132 1PE133
Unit 14 POL130 AZI131 1PE132

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany