3DSD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF P. FURIOSUS MRE11-H85S BOUND TO A BRANC AND MANGANESE
• Keywords: PROTEIN-DNA COMPLEX, DOUBLE HELIX, NUCLEASE, DNA DAMAGE, DNA ENDONUCLEASE, EXONUCLEASE, HYDROLASE, MANGANESE, METAL-BIND HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DSD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	A	333	2750	0
2	Protein	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	B	333	2750	0
3	Other macromolecule	DNA (5'- D(*DCP*DGP*DCP*DGP*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP* P*DTP*DTP*DGP*DTP*DGP*DGP*DAP*DTP*DA)-3')	C	23	473	0
4	Ligand	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	A	2	0	2
5	Ligand	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	B	2	0	2
6	Water			300	0	300
total				993	5973	304

Proteins

Unit 1

MET 1 LYS 2 PHE 3 ALA 4 HIS 5 LEU 6 ALA 7 ASP 8 ILE 9 HIS 10 LEU 11 GLY 12 TYR 13 GLU 14 GLN 15 PHE 16 HIS 17 LYS 18 PRO 19 GLN 20 ARG 21 GLU 22 GLU 23 GLU 24 PHE 25 ALA 26 GLU 27 ALA 28 PHE 29 LYS 30 ASN 31 ALA 32 LEU 33 GLU 34 ILE 35 ALA 36 VAL 37 GLN 38 GLU 39 ASN 40 VAL 41 ASP 42 PHE 43 ILE 44 LEU 45 ILE 46 ALA 47 GLY 48 ASP 49 LEU 50 PHE 51 HIS 52 SER 53 SER 54 ARG 55 PRO 56 SER 57 PRO 58 GLY 59 THR 60 LEU 61 LYS 62 LYS 63 ALA 64 ILE 65 ALA 66 LEU 67 LEU 68 GLN 69 ILE 70 PRO 71 LYS 72 GLU 73 HIS 74 SER 75 ILE 76 PRO 77 VAL 78 PHE 79 ALA 80 ILE 81 GLU 82 GLY 83 ASN 84 SER 85 ASP 86 ARG 87 THR 88 GLN 89 ARG 90 GLY 91 PRO 92 SER 93 VAL 94 LEU 95 ASN 96 LEU 97 LEU 98 GLU 99 ASP 100 PHE 101 GLY 102 LEU 103 VAL 104 TYR 105 VAL 106 ILE 107 GLY 108 MET 109 ARG 110 LYS 111 GLU 112 LYS 113 VAL 114 GLU 115 ASN 116 GLU 117 TYR 118 LEU 119 THR 120 SER 121 GLU 122 ARG 123 LEU 124 GLY 125 ASN 126 GLY 127 GLU 128 TYR 129 LEU 130 VAL 131 LYS 132 GLY 133 VAL 134 TYR 135 LYS 136 ASP 137 LEU 138 GLU 139 ILE 140 HIS 141 GLY 142 MET 143 LYS 144 TYR 145 MET 146 SER 147 SER 148 ALA 149 TRP 150 PHE 151 GLU 152 ALA 153 ASN 154 LYS 155 GLU 156 ILE 157 LEU 158 LYS 159 ARG 160 LEU 161 PHE 162 ARG 163 PRO 164 THR 165 ASP 166 ASN 167 ALA 168 ILE 169 LEU 170 MET 171 LEU 172 HIS 173 GLN 174 GLY 175 VAL 176 ARG 177 GLU 178 VAL 179 SER 180 GLU 181 ALA 182 ARG 183 GLY 184 GLU 185 ASP 186 TYR 187 PHE 188 GLU 189 ILE 190 GLY 191 LEU 192 GLY 193 ASP 194 LEU 195 PRO 196 GLU 197 GLY 198 TYR 199 LEU 200 TYR 201 TYR 202 ALA 203 LEU 204 GLY 205 HIS 206 ILE 207 HIS 208 LYS 209 ARG 210 TYR 211 GLU 212 THR 213 SER 214 TYR 215 SER 216 GLY 217 SER 218 PRO 219 VAL 220 VAL 221 TYR 222 PRO 223 GLY 224 SER 225 LEU 226 GLU 227 ARG 228 TRP 229 ASP 230 PHE 231 GLY 232 ASP 233 TYR 234 GLU 235 VAL 236 ARG 237 TYR 238 GLU 239 TRP 240 ASP 241 GLY 242 ILE 243 LYS 244 PHE 245 LYS 246 GLU 247 ARG 248 TYR 249 GLY 250 VAL 251 ASN 252 LYS 253 GLY 254 PHE 255 TYR 256 ILE 257 VAL 258 GLU 259 ASP 260 PHE 261 LYS 262 PRO 263 ARG 264 PHE 265 VAL 266 GLU 267 ILE 268 LYS 269 VAL 270 ARG 271 PRO 272 PHE 273 ILE 274 ASP 275 VAL 276 LYS 277 ILE 278 LYS 279 GLY 280 SER 281 GLU 282 GLU 283 GLU 284 ILE 285 ARG 286 LYS 287 ALA 288 ILE 289 LYS 290 ARG 291 LEU 292 ILE 293 PRO 294 LEU 295 ILE 296 PRO 297 LYS 298 ASN 299 ALA 300 TYR 301 VAL 302 ARG 303 LEU 304 ASN 305 ILE 306 GLY 307 TRP 308 ARG 309 LYS 310 PRO 311 PHE 312 ASP 313 LEU 314 THR 315 GLU 316 ILE 317 LYS 318 GLU 319 LEU 320 LEU 321 ASN 322 VAL 323 GLU 324 TYR 325 LEU 326 LYS 327 ILE 328 ASP 329 THR 330 TRP 331 ARG 332 ILE 333

Unit 2

MET 1 LYS 2 PHE 3 ALA 4 HIS 5 LEU 6 ALA 7 ASP 8 ILE 9 HIS 10 LEU 11 GLY 12 TYR 13 GLU 14 GLN 15 PHE 16 HIS 17 LYS 18 PRO 19 GLN 20 ARG 21 GLU 22 GLU 23 GLU 24 PHE 25 ALA 26 GLU 27 ALA 28 PHE 29 LYS 30 ASN 31 ALA 32 LEU 33 GLU 34 ILE 35 ALA 36 VAL 37 GLN 38 GLU 39 ASN 40 VAL 41 ASP 42 PHE 43 ILE 44 LEU 45 ILE 46 ALA 47 GLY 48 ASP 49 LEU 50 PHE 51 HIS 52 SER 53 SER 54 ARG 55 PRO 56 SER 57 PRO 58 GLY 59 THR 60 LEU 61 LYS 62 LYS 63 ALA 64 ILE 65 ALA 66 LEU 67 LEU 68 GLN 69 ILE 70 PRO 71 LYS 72 GLU 73 HIS 74 SER 75 ILE 76 PRO 77 VAL 78 PHE 79 ALA 80 ILE 81 GLU 82 GLY 83 ASN 84 SER 85 ASP 86 ARG 87 THR 88 GLN 89 ARG 90 GLY 91 PRO 92 SER 93 VAL 94 LEU 95 ASN 96 LEU 97 LEU 98 GLU 99 ASP 100 PHE 101 GLY 102 LEU 103 VAL 104 TYR 105 VAL 106 ILE 107 GLY 108 MET 109 ARG 110 LYS 111 GLU 112 LYS 113 VAL 114 GLU 115 ASN 116 GLU 117 TYR 118 LEU 119 THR 120 SER 121 GLU 122 ARG 123 LEU 124 GLY 125 ASN 126 GLY 127 GLU 128 TYR 129 LEU 130 VAL 131 LYS 132 GLY 133 VAL 134 TYR 135 LYS 136 ASP 137 LEU 138 GLU 139 ILE 140 HIS 141 GLY 142 MET 143 LYS 144 TYR 145 MET 146 SER 147 SER 148 ALA 149 TRP 150 PHE 151 GLU 152 ALA 153 ASN 154 LYS 155 GLU 156 ILE 157 LEU 158 LYS 159 ARG 160 LEU 161 PHE 162 ARG 163 PRO 164 THR 165 ASP 166 ASN 167 ALA 168 ILE 169 LEU 170 MET 171 LEU 172 HIS 173 GLN 174 GLY 175 VAL 176 ARG 177 GLU 178 VAL 179 SER 180 GLU 181 ALA 182 ARG 183 GLY 184 GLU 185 ASP 186 TYR 187 PHE 188 GLU 189 ILE 190 GLY 191 LEU 192 GLY 193 ASP 194 LEU 195 PRO 196 GLU 197 GLY 198 TYR 199 LEU 200 TYR 201 TYR 202 ALA 203 LEU 204 GLY 205 HIS 206 ILE 207 HIS 208 LYS 209 ARG 210 TYR 211 GLU 212 THR 213 SER 214 TYR 215 SER 216 GLY 217 SER 218 PRO 219 VAL 220 VAL 221 TYR 222 PRO 223 GLY 224 SER 225 LEU 226 GLU 227 ARG 228 TRP 229 ASP 230 PHE 231 GLY 232 ASP 233 TYR 234 GLU 235 VAL 236 ARG 237 TYR 238 GLU 239 TRP 240 ASP 241 GLY 242 ILE 243 LYS 244 PHE 245 LYS 246 GLU 247 ARG 248 TYR 249 GLY 250 VAL 251 ASN 252 LYS 253 GLY 254 PHE 255 TYR 256 ILE 257 VAL 258 GLU 259 ASP 260 PHE 261 LYS 262 PRO 263 ARG 264 PHE 265 VAL 266 GLU 267 ILE 268 LYS 269 VAL 270 ARG 271 PRO 272 PHE 273 ILE 274 ASP 275 VAL 276 LYS 277 ILE 278 LYS 279 GLY 280 SER 281 GLU 282 GLU 283 GLU 284 ILE 285 ARG 286 LYS 287 ALA 288 ILE 289 LYS 290 ARG 291 LEU 292 ILE 293 PRO 294 LEU 295 ILE 296 PRO 297 LYS 298 ASN 299 ALA 300 TYR 301 VAL 302 ARG 303 LEU 304 ASN 305 ILE 306 GLY 307 TRP 308 ARG 309 LYS 310 PRO 311 PHE 312 ASP 313 LEU 314 THR 315 GLU 316 ILE 317 LYS 318 GLU 319 LEU 320 LEU 321 ASN 322 VAL 323 GLU 324 TYR 325 LEU 326 LYS 327 ILE 328 ASP 329 THR 330 TRP 331 ARG 332 ILE 333

Other macromolecules

Unit 3

DG 4 DC 5 DA 6 DC 7 DA 8 DA 9 DG 10 DC 11 DT 12 DT 13 DT 14 DT 15 DG 16 DC 17 DT 18 DT 19 DG 20 DT 21 DG 22 DG 23 DA 24 DT 25 DA 26

Ligands

Unit 4	MN 403 MN 404
Unit 5	MN 405 MN 406