3DQV - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL INSIGHTS INTO NEDD8 ACTIVATION OF CULLIN-RING LIGASES: CONFORMATIONAL CONTROL OF CONJUGATION
• Keywords: UBIQUITIN, NEDD8, SCF, CULLIN-RING LIGASE, CULLIN, NUCLEUS, UBL CONJUGATION PATHWAY, HOST-VIRUS INTERACTION, RECEPTOR, UBL CONJUGATION, ACETYLATION, CYTOPLASM, DNA DAMAGE, DNA REPAIR, METAL-BINDING, ZINC, ZINC-FINGER, SIGNALING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DQV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NEDD8	A	78	585	24
2	Protein	CULLIN-5	C	376	3012	104
3	Protein	RBX1	R	86	699	8
4	Protein	NEDD8	B	77	581	24
5	Protein	CULLIN-5	D	378	3028	104
6	Protein	RBX1	Y	85	656	8
7	Ligand	RBX1	R	3	0	3
8	Ligand	RBX1	Y	3	0	3
total				1086	8561	278

Proteins

Unit 1	GLY 99 SER 100 MSE 101 LEU 102 ILE 103 LYS 104 VAL 105 LYS 106 THR 107 LEU 108 THR 109 GLY 110 LYS 111 GLU 112 ILE 113 GLU 114 ILE 115 ASP 116 ILE 117 GLU 118 PRO 119 THR 120 ASP 121 LYS 122 VAL 123 GLU 124 ARG 125 ILE 126 LYS 127 GLU 128 ARG 129 VAL 130 GLU 131 GLU 132 LYS 133 GLU 134 GLY 135 ILE 136 PRO 137 PRO 138 GLN 139 GLN 140 GLN 141 ARG 142 LEU 143 ILE 144 TYR 145 SER 146 GLY 147 LYS 148 GLN 149 MSE 150 ASN 151 ASP 152 GLU 153 LYS 154 THR 155 ALA 156 ALA 157 ASP 158 TYR 159 LYS 160 ILE 161 MSE 162 GLY 163 GLY 164 SER 165 VAL 166 LEU 167 HIS 168 LEU 169 VAL 170 LEU 171 ALA 172 LEU 173 ARG 174 GLY 175 GLY 176
Unit 2	GLU 1401 SER 1402 LYS 1403 CYS 1404 PRO 1405 GLU 1406 GLU 1407 LEU 1408 ALA 1409 ASN 1410 TYR 1411 CYS 1412 ASP 1413 MSE 1414 LEU 1415 LEU 1416 ARG 1417 LYS 1418 THR 1419 PRO 1420 LEU 1421 SER 1422 LYS 1423 LYS 1424 LEU 1425 THR 1426 SER 1427 GLU 1428 GLU 1429 ILE 1430 GLU 1431 ALA 1432 LYS 1433 LEU 1434 LYS 1435 GLU 1436 VAL 1437 LEU 1438 LYS 1439 LYS 1440 LEU 1441 LYS 1442 TYR 1443 VAL 1444 GLN 1445 ASN 1446 LYS 1447 ASP 1448 VAL 1449 PHE 1450 MSE 1451 ARG 1452 TYR 1453 HIS 1454 LYS 1455 ALA 1456 HIS 1457 LEU 1458 THR 1459 ARG 1460 ARG 1461 LEU 1462 ILE 1463 LEU 1464 ASP 1465 ILE 1466 SER 1467 ALA 1468 ASP 1469 SER 1470 GLU 1471 ILE 1472 GLU 1473 GLU 1474 ASN 1475 MSE 1476 VAL 1477 GLU 1478 TRP 1479 LEU 1480 ARG 1481 GLU 1482 VAL 1483 GLY 1484 MSE 1485 PRO 1486 ALA 1487 ASP 1488 TYR 1489 VAL 1490 ASN 1491 LYS 1492 LEU 1493 ALA 1494 ARG 1495 MSE 1496 PHE 1497 GLN 1498 ASP 1499 ILE 1500 LYS 1501 VAL 1502 SER 1503 GLU 1504 ASP 1505 LEU 1506 ASN 1507 GLN 1508 ALA 1509 PHE 1510 LYS 1511 GLU 1512 MSE 1513 HIS 1514 LYS 1515 ALA 1520 LEU 1521 PRO 1522 ALA 1523 ASP 1524 SER 1525 VAL 1526 ASN 1527 ILE 1528 LYS 1529 ILE 1530 LEU 1531 ASN 1532 ALA 1533 GLY 1534 ALA 1535 TRP 1536 SER 1537 ARG 1538 SER 1539 SER 1540 GLU 1541 LYS 1542 VAL 1543 PHE 1544 VAL 1545 SER 1546 LEU 1547 PRO 1548 THR 1549 GLU 1550 LEU 1551 GLU 1552 ASP 1553 LEU 1554 ILE 1555 PRO 1556 GLU 1557 VAL 1558 GLU 1559 GLU 1560 PHE 1561 TYR 1562 LYS 1563 LYS 1564 ASN 1565 HIS 1566 SER 1567 GLY 1568 ARG 1569 LYS 1570 LEU 1571 HIS 1572 TRP 1573 HIS 1574 HIS 1575 LEU 1576 MSE 1577 SER 1578 ASN 1579 GLY 1580 ILE 1581 ILE 1582 THR 1583 PHE 1584 LYS 1585 ASN 1586 GLU 1587 VAL 1588 GLY 1589 GLN 1590 TYR 1591 ASP 1592 LEU 1593 GLU 1594 VAL 1595 THR 1596 THR 1597 PHE 1598 GLN 1599 LEU 1600 ALA 1601 VAL 1602 LEU 1603 PHE 1604 ALA 1605 TRP 1606 ASN 1607 GLN 1608 ARG 1609 PRO 1610 ARG 1611 GLU 1612 LYS 1613 ILE 1614 SER 1615 PHE 1616 GLU 1617 ASN 1618 LEU 1619 LYS 1620 LEU 1621 ALA 1622 THR 1623 GLU 1624 LEU 1625 PRO 1626 ASP 1627 ALA 1628 GLU 1629 LEU 1630 ARG 1631 ARG 1632 THR 1633 LEU 1634 TRP 1635 SER 1636 LEU 1637 VAL 1638 ALA 1639 PHE 1640 PRO 1641 LYS 1642 LEU 1643 LYS 1644 ARG 1645 GLN 1646 VAL 1647 LEU 1648 LEU 1649 TYR 1650 GLU 1651 PRO 1652 GLN 1653 VAL 1654 ASN 1655 SER 1656 PRO 1657 LYS 1658 ASP 1659 PHE 1660 THR 1661 GLU 1662 GLY 1663 THR 1664 LEU 1665 PHE 1666 SER 1667 VAL 1668 ASN 1669 GLN 1670 GLU 1671 PHE 1672 SER 1673 LEU 1674 ILE 1675 LYS 1676 ASN 1677 ALA 1678 LYS 1679 VAL 1680 GLN 1681 LYS 1682 ARG 1683 GLY 1684 LYS 1685 ILE 1686 ASN 1687 LEU 1688 ILE 1689 GLY 1690 ARG 1691 LEU 1692 GLN 1693 LEU 1694 THR 1695 THR 1696 GLU 1697 ARG 1698 MSE 1699 ARG 1700 GLU 1701 GLU 1702 GLU 1703 ASN 1704 GLU 1705 GLY 1706 ILE 1707 VAL 1708 GLN 1709 LEU 1710 ARG 1711 ILE 1712 LEU 1713 ARG 1714 THR 1715 GLN 1716 GLU 1717 ALA 1718 ILE 1719 ILE 1720 GLN 1721 ILE 1722 MSE 1723 LYS 1724 MSE 1725 ARG 1726 LYS 1727 LYS 1728 ILE 1729 SER 1730 ASN 1731 ALA 1732 GLN 1733 LEU 1734 GLN 1735 THR 1736 GLU 1737 LEU 1738 VAL 1739 GLU 1740 ILE 1741 LEU 1742 LYS 1743 ASN 1744 MSE 1745 PHE 1746 LEU 1747 PRO 1748 GLN 1749 LYS 1750 LYS 1751 MSE 1752 ILE 1753 LYS 1754 GLU 1755 GLN 1756 ILE 1757 GLU 1758 TRP 1759 LEU 1760 ILE 1761 GLU 1762 HIS 1763 LYS 1764 TYR 1765 ILE 1766 ARG 1767 ARG 1768 ASP 1769 GLU 1770 SER 1771 ASP 1772 ILE 1773 ASN 1774 THR 1775 PHE 1776 ILE 1777 TYR 1778 MSE 1779 ALA 1780
Unit 3	LYS 20 ARG 21 PHE 22 GLU 23 VAL 24 LYS 25 LYS 26 TRP 27 ASN 28 ALA 29 VAL 30 ALA 31 LEU 32 TRP 33 ALA 34 TRP 35 ASP 36 ILE 37 VAL 38 VAL 39 ASP 40 ASN 41 CYS 42 ALA 43 ILE 44 CYS 45 ARG 46 ASN 47 HIS 48 ILE 49 MSE 50 ASP 51 LEU 52 CYS 53 ILE 54 GLU 55 CYS 56 GLN 57 ALA 58 ASN 59 GLN 60 ALA 61 SER 62 ALA 63 THR 64 SER 65 GLU 66 GLU 67 CYS 68 THR 69 VAL 70 ALA 71 TRP 72 GLY 73 VAL 74 CYS 75 ASN 76 HIS 77 ALA 78 PHE 79 HIS 80 PHE 81 HIS 82 CYS 83 ILE 84 SER 85 ARG 86 TRP 87 LEU 88 LYS 89 THR 90 ARG 91 GLN 92 VAL 93 CYS 94 PRO 95 LEU 96 ASP 97 ASN 98 ARG 99 GLU 100 TRP 101 GLU 102 PHE 103 GLN 104 LYS 105
Unit 4	SER 100 MSE 101 LEU 102 ILE 103 LYS 104 VAL 105 LYS 106 THR 107 LEU 108 THR 109 GLY 110 LYS 111 GLU 112 ILE 113 GLU 114 ILE 115 ASP 116 ILE 117 GLU 118 PRO 119 THR 120 ASP 121 LYS 122 VAL 123 GLU 124 ARG 125 ILE 126 LYS 127 GLU 128 ARG 129 VAL 130 GLU 131 GLU 132 LYS 133 GLU 134 GLY 135 ILE 136 PRO 137 PRO 138 GLN 139 GLN 140 GLN 141 ARG 142 LEU 143 ILE 144 TYR 145 SER 146 GLY 147 LYS 148 GLN 149 MSE 150 ASN 151 ASP 152 GLU 153 LYS 154 THR 155 ALA 156 ALA 157 ASP 158 TYR 159 LYS 160 ILE 161 MSE 162 GLY 163 GLY 164 SER 165 VAL 166 LEU 167 HIS 168 LEU 169 VAL 170 LEU 171 ALA 172 LEU 173 ARG 174 GLY 175 GLY 176
Unit 5	GLU 1401 SER 1402 LYS 1403 CYS 1404 PRO 1405 GLU 1406 GLU 1407 LEU 1408 ALA 1409 ASN 1410 TYR 1411 CYS 1412 ASP 1413 MSE 1414 LEU 1415 LEU 1416 ARG 1417 LYS 1418 THR 1419 PRO 1420 LEU 1421 SER 1422 LYS 1423 LYS 1424 LEU 1425 THR 1426 SER 1427 GLU 1428 GLU 1429 ILE 1430 GLU 1431 ALA 1432 LYS 1433 LEU 1434 LYS 1435 GLU 1436 VAL 1437 LEU 1438 LYS 1439 LYS 1440 LEU 1441 LYS 1442 TYR 1443 VAL 1444 GLN 1445 ASN 1446 LYS 1447 ASP 1448 VAL 1449 PHE 1450 MSE 1451 ARG 1452 TYR 1453 HIS 1454 LYS 1455 ALA 1456 HIS 1457 LEU 1458 THR 1459 ARG 1460 ARG 1461 LEU 1462 ILE 1463 LEU 1464 ASP 1465 ILE 1466 SER 1467 ALA 1468 ASP 1469 SER 1470 GLU 1471 ILE 1472 GLU 1473 GLU 1474 ASN 1475 MSE 1476 VAL 1477 GLU 1478 TRP 1479 LEU 1480 ARG 1481 GLU 1482 VAL 1483 GLY 1484 MSE 1485 PRO 1486 ALA 1487 ASP 1488 TYR 1489 VAL 1490 ASN 1491 LYS 1492 LEU 1493 ALA 1494 ARG 1495 MSE 1496 PHE 1497 GLN 1498 ASP 1499 ILE 1500 LYS 1501 VAL 1502 SER 1503 GLU 1504 ASP 1505 LEU 1506 ASN 1507 GLN 1508 ALA 1509 PHE 1510 LYS 1511 GLU 1512 MSE 1513 HIS 1514 LYS 1515 ASN 1516 ASN 1517 ALA 1520 LEU 1521 PRO 1522 ALA 1523 ASP 1524 SER 1525 VAL 1526 ASN 1527 ILE 1528 LYS 1529 ILE 1530 LEU 1531 ASN 1532 ALA 1533 GLY 1534 ALA 1535 TRP 1536 SER 1537 ARG 1538 SER 1539 SER 1540 GLU 1541 LYS 1542 VAL 1543 PHE 1544 VAL 1545 SER 1546 LEU 1547 PRO 1548 THR 1549 GLU 1550 LEU 1551 GLU 1552 ASP 1553 LEU 1554 ILE 1555 PRO 1556 GLU 1557 VAL 1558 GLU 1559 GLU 1560 PHE 1561 TYR 1562 LYS 1563 LYS 1564 ASN 1565 HIS 1566 SER 1567 GLY 1568 ARG 1569 LYS 1570 LEU 1571 HIS 1572 TRP 1573 HIS 1574 HIS 1575 LEU 1576 MSE 1577 SER 1578 ASN 1579 GLY 1580 ILE 1581 ILE 1582 THR 1583 PHE 1584 LYS 1585 ASN 1586 GLU 1587 VAL 1588 GLY 1589 GLN 1590 TYR 1591 ASP 1592 LEU 1593 GLU 1594 VAL 1595 THR 1596 THR 1597 PHE 1598 GLN 1599 LEU 1600 ALA 1601 VAL 1602 LEU 1603 PHE 1604 ALA 1605 TRP 1606 ASN 1607 GLN 1608 ARG 1609 PRO 1610 ARG 1611 GLU 1612 LYS 1613 ILE 1614 SER 1615 PHE 1616 GLU 1617 ASN 1618 LEU 1619 LYS 1620 LEU 1621 ALA 1622 THR 1623 GLU 1624 LEU 1625 PRO 1626 ASP 1627 ALA 1628 GLU 1629 LEU 1630 ARG 1631 ARG 1632 THR 1633 LEU 1634 TRP 1635 SER 1636 LEU 1637 VAL 1638 ALA 1639 PHE 1640 PRO 1641 LYS 1642 LEU 1643 LYS 1644 ARG 1645 GLN 1646 VAL 1647 LEU 1648 LEU 1649 TYR 1650 GLU 1651 PRO 1652 GLN 1653 VAL 1654 ASN 1655 SER 1656 PRO 1657 LYS 1658 ASP 1659 PHE 1660 THR 1661 GLU 1662 GLY 1663 THR 1664 LEU 1665 PHE 1666 SER 1667 VAL 1668 ASN 1669 GLN 1670 GLU 1671 PHE 1672 SER 1673 LEU 1674 ILE 1675 LYS 1676 ASN 1677 ALA 1678 LYS 1679 VAL 1680 GLN 1681 LYS 1682 ARG 1683 GLY 1684 LYS 1685 ILE 1686 ASN 1687 LEU 1688 ILE 1689 GLY 1690 ARG 1691 LEU 1692 GLN 1693 LEU 1694 THR 1695 THR 1696 GLU 1697 ARG 1698 MSE 1699 ARG 1700 GLU 1701 GLU 1702 GLU 1703 ASN 1704 GLU 1705 GLY 1706 ILE 1707 VAL 1708 GLN 1709 LEU 1710 ARG 1711 ILE 1712 LEU 1713 ARG 1714 THR 1715 GLN 1716 GLU 1717 ALA 1718 ILE 1719 ILE 1720 GLN 1721 ILE 1722 MSE 1723 LYS 1724 MSE 1725 ARG 1726 LYS 1727 LYS 1728 ILE 1729 SER 1730 ASN 1731 ALA 1732 GLN 1733 LEU 1734 GLN 1735 THR 1736 GLU 1737 LEU 1738 VAL 1739 GLU 1740 ILE 1741 LEU 1742 LYS 1743 ASN 1744 MSE 1745 PHE 1746 LEU 1747 PRO 1748 GLN 1749 LYS 1750 LYS 1751 MSE 1752 ILE 1753 LYS 1754 GLU 1755 GLN 1756 ILE 1757 GLU 1758 TRP 1759 LEU 1760 ILE 1761 GLU 1762 HIS 1763 LYS 1764 TYR 1765 ILE 1766 ARG 1767 ARG 1768 ASP 1769 GLU 1770 SER 1771 ASP 1772 ILE 1773 ASN 1774 THR 1775 PHE 1776 ILE 1777 TYR 1778 MSE 1779 ALA 1780
Unit 6	LYS 19 LYS 20 ARG 21 PHE 22 GLU 23 VAL 24 LYS 25 LYS 26 TRP 27 ASN 28 ALA 29 VAL 30 ALA 31 LEU 32 TRP 33 ALA 34 TRP 35 ASP 36 ILE 37 VAL 38 VAL 39 ASP 40 ASN 41 CYS 42 ALA 43 ILE 44 CYS 45 ARG 46 ASN 47 HIS 48 ILE 49 MSE 50 CYS 53 ILE 54 GLU 55 CYS 56 GLN 57 ALA 58 ASN 59 GLN 60 ALA 61 SER 62 ALA 63 THR 64 SER 65 GLU 66 GLU 67 CYS 68 THR 69 VAL 70 ALA 71 TRP 72 GLY 73 VAL 74 CYS 75 ASN 76 HIS 77 ALA 78 PHE 79 HIS 80 PHE 81 HIS 82 CYS 83 ILE 84 SER 85 ARG 86 TRP 87 LEU 88 LYS 89 THR 90 ARG 91 GLN 92 VAL 93 CYS 94 PRO 95 LEU 96 ASP 97 ASN 98 ARG 99 GLU 100 TRP 101 GLU 102 PHE 103 GLN 104 LYS 105

Ligands

Unit 7	ZN 4004 ZN 4005 ZN 4006
Unit 8	ZN 4001 ZN 4002 ZN 4003