3DP3 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE (FABZ) FROM HELICOBACTER PYLORI IN COMPLEX WITH COMPOUND 3Q
• Keywords: FABZ COMPLEX, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DP3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	A	152	1224	0
2	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	B	149	1198	0
3	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	C	151	1216	0
4	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	D	151	1214	0
5	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	E	152	1224	0
6	Protein	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	F	149	1198	0
7	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	A	4	0	44
8	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	B	3	0	19
9	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	C	3	0	35
10	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	D	1	0	1
11	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	E	2	0	10
12	Ligand	(3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE	F	1	0	1
13	Water			401	0	401
total				1319	7274	511

Proteins

Unit 1	LEU 8 GLN 9 SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158 GLU 159
Unit 2	SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158
Unit 3	GLN 9 SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158 GLU 159
Unit 4	LEU 8 GLN 9 SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158
Unit 5	LEU 8 GLN 9 SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158 GLU 159
Unit 6	SER 10 GLN 11 PHE 12 PHE 13 ILE 14 GLU 15 HIS 16 ILE 17 LEU 18 GLN 19 ILE 20 LEU 21 PRO 22 HIS 23 ARG 24 TYR 25 PRO 26 MET 27 LEU 28 LEU 29 VAL 30 ASP 31 ARG 32 ILE 33 THR 34 GLU 35 LEU 36 GLN 37 ALA 38 ASN 39 GLN 40 LYS 41 ILE 42 VAL 43 ALA 44 TYR 45 LYS 46 ASN 47 ILE 48 THR 49 PHE 50 ASN 51 GLU 52 ASP 53 VAL 54 PHE 55 ASN 56 GLY 57 HIS 58 PHE 59 PRO 60 ASN 61 LYS 62 PRO 63 ILE 64 PHE 65 PRO 66 GLY 67 VAL 68 LEU 69 ILE 70 VAL 71 GLU 72 GLY 73 MET 74 ALA 75 GLN 76 SER 77 GLY 78 GLY 79 PHE 80 LEU 81 ALA 82 PHE 83 THR 84 SER 85 LEU 86 TRP 87 GLY 88 PHE 89 ASP 90 PRO 91 GLU 92 ILE 93 ALA 94 LYS 95 THR 96 LYS 97 ILE 98 VAL 99 TYR 100 PHE 101 MET 102 THR 103 ILE 104 ASP 105 LYS 106 VAL 107 LYS 108 PHE 109 ARG 110 ILE 111 PRO 112 VAL 113 THR 114 PRO 115 GLY 116 ASP 117 ARG 118 LEU 119 GLU 120 TYR 121 HIS 122 LEU 123 GLU 124 VAL 125 LEU 126 LYS 127 HIS 128 LYS 129 GLY 130 MET 131 ILE 132 TRP 133 GLN 134 VAL 135 GLY 136 GLY 137 THR 138 ALA 139 GLN 140 VAL 141 ASP 142 GLY 143 LYS 144 VAL 145 VAL 146 ALA 147 GLU 148 ALA 149 GLU 150 LEU 151 LYS 152 ALA 153 MET 154 ILE 155 ALA 156 GLU 157 ARG 158

Ligands

Unit 7	CL 160 BEN 161 BEN 162 4BB 163
Unit 8	CL 160 BEN 161 BEN 162
Unit 9	CL 160 BEN 161 4BB 162
Unit 10	CL 160
Unit 11	CL 160 BEN 161
Unit 12	CL 160