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Sequence, Chains, Asymmetric and Biological Units

Title MOLECULAR STRUCTURE FOR THE HIV-1 GP120 TRIMER IN THE B12-BO
Keywords HIV-1, ENVELOPE GLYCOPROTEIN, IMMUNODEFICIENCY VIRUS, GP120, APOPTOSIS, CLEAVAGE ON PAIR OF BASIC RESIDUES, COILED COIL, PROTEIN, FUSION PROTEIN, HOST-VIRUS INTERACTION, LIPOPROTEI MEMBRANE, PALMITATE, VIRAL IMMUNOEVASION, VIRION, VIRAL PRO
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3DNL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  A 35 293 0
2  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  B 170 1301 0
3  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  C 83 652 0
4  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  D 35 293 0
5  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  E 170 1301 0
6  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  F 83 652 0
7  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  G 35 293 0
8  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  H 170 1301 0
9  Protein   HIV-1 ENVELOPE GLYCOPROTEIN GP120  I 83 652 0
total       864 6738 0
Proteins
Unit 1 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124
Unit 2 THR198 SER199 VAL200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 THR240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 ARG252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 VAL271 ILE272 ARG273 SER274 VAL275 ASN276 PHE277 THR278 ASP279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 GLN287 LEU288 ASN289 THR290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 GLY298 ALA299 GLY329 HIS330 CYS331 ASN332 ILE333 SER334 ARG335 ALA336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 LYS343 GLN344 ILE345 ALA346 SER347 LYS348 LEU349 ARG350 GLU351 GLN352 PHE353 GLY354 ASN355 ASN356 LYS357 THR358 ILE359 ILE360 PHE361 LYS362 GLN363 SER364 SER365 GLY366 GLY367 ASP368 PRO369 GLU370 ILE371 VAL372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 SER387 THR388 GLN389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 PHE396
Unit 3 GLY410 SER411 ASP412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 LYS429 VAL430 GLY431 LYS432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 SER440 GLY441 GLN442 ILE443 ARG444 CYS445 SER446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ASN460 SER461 ASN462 ASN463 GLU464 SER465 GLU466 ILE467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492
Unit 4 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124
Unit 5 THR198 SER199 VAL200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 THR240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 ARG252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 VAL271 ILE272 ARG273 SER274 VAL275 ASN276 PHE277 THR278 ASP279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 GLN287 LEU288 ASN289 THR290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 GLY298 ALA299 GLY329 HIS330 CYS331 ASN332 ILE333 SER334 ARG335 ALA336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 LYS343 GLN344 ILE345 ALA346 SER347 LYS348 LEU349 ARG350 GLU351 GLN352 PHE353 GLY354 ASN355 ASN356 LYS357 THR358 ILE359 ILE360 PHE361 LYS362 GLN363 SER364 SER365 GLY366 GLY367 ASP368 PRO369 GLU370 ILE371 VAL372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 SER387 THR388 GLN389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 PHE396
Unit 6 GLY410 SER411 ASP412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 LYS429 VAL430 GLY431 LYS432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 SER440 GLY441 GLN442 ILE443 ARG444 CYS445 SER446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ASN460 SER461 ASN462 ASN463 GLU464 SER465 GLU466 ILE467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492
Unit 7 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124
Unit 8 THR198 SER199 VAL200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 THR240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 ARG252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 VAL271 ILE272 ARG273 SER274 VAL275 ASN276 PHE277 THR278 ASP279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 GLN287 LEU288 ASN289 THR290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 GLY298 ALA299 GLY329 HIS330 CYS331 ASN332 ILE333 SER334 ARG335 ALA336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 LYS343 GLN344 ILE345 ALA346 SER347 LYS348 LEU349 ARG350 GLU351 GLN352 PHE353 GLY354 ASN355 ASN356 LYS357 THR358 ILE359 ILE360 PHE361 LYS362 GLN363 SER364 SER365 GLY366 GLY367 ASP368 PRO369 GLU370 ILE371 VAL372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 SER387 THR388 GLN389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 PHE396
Unit 9 GLY410 SER411 ASP412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 LYS429 VAL430 GLY431 LYS432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 SER440 GLY441 GLN442 ILE443 ARG444 CYS445 SER446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ASN460 SER461 ASN462 ASN463 GLU464 SER465 GLU466 ILE467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany