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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWIT TO S-(2-AMINOETHYL)-L-CYSTEINE
Keywords RIBOSWITCH, LYSINE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3DIG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    X 174 3729 23
2  Ligand   RNA (174-MER)  X 17 0 29
3 Water     28 0 28
total       219 3729 80

Nucleic acids
Unit 1 G1 G2 C3 C4 G5 A6 C7 G8 G9 A10 G11 G12 C13 G14 C15 G16 C17 C18 C19 G20 A21 G22 A23 U24 G25 A26 G27 U28 A29 G30 G31 C32 U33 G34 U35 C36 C37 C38 A39 U40 C41 A42 G43 G44 G45 G46 A47 G48 G49 A50 A51 U52 C53 G54 G55 G56 G57 A58 C59 G60 G61 C62 U63 G64 A65 A66 A67 G68 G69 C70 G71 A72 G73 G74 G75 C76 G77 C78 C79 G80 A81 A82 G83 G84 G85 U86 G87 C88 A89 G90 A91 G92 U93 U94 C95 C96 U97 C98 C99 C100 G101 C102 U103 C104 U105 G106 C107 A108 U109 G110 C111 C112 U113 G114 G115 G116 G117 G118 U119 A120 U121 G122 G123 G124 G125 A126 A127 U128 A129 C130 C131 C132 A133 U134 A135 C136 C137 A138 C139 U140 G141 U142 C143 A144 C145 G146 G147 A148 G149 G150 U151 C152 U153 C154 U155 C156 C157 G158 U159 G160 G161 A162 G163 A164 G165 C166 C167 G168 U169 C170 G171 G172 U173 CCC174

Ligands
Unit 2 SLZ175 K200 NA201 NA202 NA203 NA204 NA205 NA206 NA207 NA208 NA209 NA210 NA211 NA212 NA213 NA214 IPA290

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany