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Sequence, Chains, Asymmetric and Biological Units

Title DROSOPHILA NOD (3DC4) AND BOVINE TUBULIN (1JFF) DOCKED INTO ANGSTROM CRYO-EM MAP OF NUCLEOTIDE-FREE NOD COMPLEXED TO TH MICROTUBULE
Keywords KINESIN, CATALYTIC DOMAIN, ATPASE, MICROTUBULE, ADP, NUCLEOT BINDING PROTEIN, CRYO-EM, 3D RECONSTRUCTION, TUBULIN, NUCLE FREE, ATP-BINDING, COILED COIL, MOTOR PROTEIN, NUCLEOTIDE-B
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3DCO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   KINESIN-LIKE PROTEIN NOD  N 291 2247 0
2  Protein   BOVINE ALPHA TUBULIN  A 412 3227 0
3  Protein   BOVINE BETA TUBULIN  B 426 3351 0
4  Ligand   KINESIN-LIKE PROTEIN NOD  N 2 0 28
5  Ligand   BOVINE ALPHA TUBULIN  A 2 0 2
6  Ligand   BOVINE BETA TUBULIN  B 3 0 122
total       1136 8825 152
Proteins
Unit 1 ALA4 LYS5 LEU6 SER7 ALA8 VAL9 ARG10 ILE11 ALA12 VAL13 ARG14 GLU15 ALA16 PRO17 TYR18 ARG19 PRO27 SER28 VAL29 VAL30 GLN31 PHE32 PRO33 PRO34 TRP35 SER36 ASP37 GLY38 LYS39 SER40 LEU41 ILE42 VAL43 ASP44 GLN45 ASN46 GLU47 PHE48 HIS49 PHE50 ASP51 HIS52 ALA53 PHE54 PRO55 ALA56 THR57 ILE58 SER59 GLN60 ASP61 GLU62 MET63 TYR64 GLN65 ALA66 LEU67 ILE68 LEU69 PRO70 LEU71 VAL72 ASP73 LYS74 LEU75 LEU76 GLU77 GLY78 PHE79 GLN80 CYS81 THR82 ALA83 LEU84 ALA85 TYR86 GLY87 GLN88 THR89 GLY90 THR91 GLY92 LYS93 SER94 TYR95 SER96 MET97 GLY98 MET99 THR100 PRO101 PRO102 GLY103 GLU104 ILE105 LEU106 PRO107 GLU108 HIS109 LEU110 GLY111 ILE112 LEU113 PRO114 ARG115 ALA116 LEU117 GLY118 ASP119 ILE120 PHE121 GLU122 ARG123 VAL124 THR125 ALA126 ARG127 GLN128 GLU129 ASN130 ASN131 LYS132 ASP133 ALA134 ILE135 GLN136 VAL137 TYR138 ALA139 SER140 PHE141 ILE142 GLU143 ILE144 TYR145 ASN146 GLU147 LYS148 PRO149 PHE150 ASP151 LEU152 LEU153 GLY154 SER155 THR156 PRO157 HIS158 MET159 PRO160 MET161 VAL162 ALA163 ALA164 ARG165 CYS166 GLN167 ARG168 CYS169 THR170 CYS171 LEU172 PRO173 LEU174 HIS175 SER176 GLN177 ALA178 ASP179 LEU180 HIS181 HIS182 ILE183 LEU184 GLU185 LEU186 GLY187 THR188 ARG189 ASN190 ARG191 ARG192 SER203 ARG204 SER205 HIS206 ALA207 ILE208 VAL209 THR210 ILE211 HIS212 VAL213 LYS214 SER215 LYS216 THR217 HIS218 HIS219 SER220 ARG221 MET222 ASN223 ILE224 VAL225 ASP226 LEU227 ALA228 GLY229 SER230 GLU231 GLY232 VAL233 VAL247 ASN248 ILE249 ASN250 LEU251 GLY252 LEU253 LEU254 SER255 ILE256 ASN257 LYS258 VAL259 VAL260 MET261 SER262 MET263 ALA264 ALA265 GLY266 HIS267 THR268 VAL269 ILE270 PRO271 TYR272 ARG273 ASP274 SER275 VAL276 LEU277 THR278 THR279 VAL280 LEU281 GLN282 ALA283 SER284 LEU285 THR286 ALA287 GLN288 SER289 TYR290 LEU291 THR292 PHE293 LEU294 ALA295 CYS296 ILE297 SER298 PRO299 HIS300 GLN301 CYS302 ASP303 LEU304 SER305 GLU306 THR307 LEU308 SER309 THR310 LEU311 ARG312 PHE313 GLY314 THR315 SER316 ALA317 LYS318 ALA319 ALA320 ALA321 LEU322 GLU323 HIS324
Unit 2 ARG2 GLU3 CYS4 ILE5 SER6 ILE7 HIS8 VAL9 GLY10 GLN11 ALA12 GLY13 VAL14 GLN15 ILE16 GLY17 ASN18 ALA19 CYS20 TRP21 GLU22 LEU23 TYR24 CYS25 LEU26 GLU27 HIS28 GLY29 ILE30 GLN31 PRO32 ASP33 GLY34 HIS61 VAL62 PRO63 ARG64 ALA65 VAL66 PHE67 VAL68 ASP69 LEU70 GLU71 PRO72 THR73 VAL74 ILE75 ASP76 GLU77 VAL78 ARG79 THR80 GLY81 THR82 TYR83 ARG84 GLN85 LEU86 PHE87 HIS88 PRO89 GLU90 GLN91 LEU92 ILE93 THR94 GLY95 LYS96 GLU97 ASP98 ALA99 ALA100 ASN101 ASN102 TYR103 ALA104 ARG105 GLY106 HIS107 TYR108 THR109 ILE110 GLY111 LYS112 GLU113 ILE114 ILE115 ASP116 LEU117 VAL118 LEU119 ASP120 ARG121 ILE122 ARG123 LYS124 LEU125 ALA126 ASP127 GLN128 CYS129 THR130 GLY131 LEU132 GLN133 GLY134 PHE135 SER136 VAL137 PHE138 HIS139 SER140 PHE141 GLY142 GLY143 GLY144 THR145 GLY146 SER147 GLY148 PHE149 THR150 SER151 LEU152 LEU153 MET154 GLU155 ARG156 LEU157 SER158 VAL159 ASP160 TYR161 GLY162 LYS163 LYS164 SER165 LYS166 LEU167 GLU168 PHE169 SER170 ILE171 TYR172 PRO173 ALA174 PRO175 GLN176 VAL177 SER178 THR179 ALA180 VAL181 VAL182 GLU183 PRO184 TYR185 ASN186 SER187 ILE188 LEU189 THR190 THR191 HIS192 THR193 THR194 LEU195 GLU196 HIS197 SER198 ASP199 CYS200 ALA201 PHE202 MET203 VAL204 ASP205 ASN206 GLU207 ALA208 ILE209 TYR210 ASP211 ILE212 CYS213 ARG214 ARG215 ASN216 LEU217 ASP218 ILE219 GLU220 ARG221 PRO222 THR223 TYR224 THR225 ASN226 LEU227 ASN228 ARG229 LEU230 ILE231 GLY232 GLN233 ILE234 VAL235 SER236 SER237 ILE238 THR239 ALA240 SER241 LEU242 ARG243 PHE244 ASP245 GLY246 ALA247 LEU248 ASN249 VAL250 ASP251 LEU252 THR253 GLU254 PHE255 GLN256 THR257 ASN258 LEU259 VAL260 PRO261 TYR262 PRO263 ARG264 GLY265 HIS266 PHE267 PRO268 LEU269 ALA270 THR271 TYR272 ALA273 PRO274 VAL275 ILE276 SER277 ALA278 GLU279 LYS280 ALA281 TYR282 HIS283 GLU284 GLN285 LEU286 SER287 VAL288 ALA289 GLU290 ILE291 THR292 ASN293 ALA294 CYS295 PHE296 GLU297 PRO298 ALA299 ASN300 GLN301 MET302 VAL303 LYS304 CYS305 ASP306 PRO307 ARG308 HIS309 GLY310 LYS311 TYR312 MET313 ALA314 CYS315 CYS316 LEU317 LEU318 TYR319 ARG320 GLY321 ASP322 VAL323 VAL324 PRO325 LYS326 ASP327 VAL328 ASN329 ALA330 ALA331 ILE332 ALA333 THR334 ILE335 LYS336 THR337 LYS338 ARG339 THR340 ILE341 GLN342 PHE343 VAL344 ASP345 TRP346 CYS347 PRO348 THR349 GLY350 PHE351 LYS352 VAL353 GLY354 ILE355 ASN356 TYR357 GLU358 PRO359 PRO360 THR361 VAL362 VAL363 PRO364 GLY365 GLY366 ASP367 LEU368 ALA369 LYS370 VAL371 GLN372 ARG373 ALA374 VAL375 CYS376 MET377 LEU378 SER379 ASN380 THR381 THR382 ALA383 ILE384 ALA385 GLU386 ALA387 TRP388 ALA389 ARG390 LEU391 ASP392 HIS393 LYS394 PHE395 ASP396 LEU397 MET398 TYR399 ALA400 LYS401 ARG402 ALA403 PHE404 VAL405 HIS406 TRP407 TYR408 VAL409 GLY410 GLU411 GLY412 MET413 GLU414 GLU415 GLY416 GLU417 PHE418 SER419 GLU420 ALA421 ARG422 GLU423 ASP424 MET425 ALA426 ALA427 LEU428 GLU429 LYS430 ASP431 TYR432 GLU433 GLU434 VAL435 GLY436 VAL437 ASP438 SER439
Unit 3 ARG2 GLU3 ILE4 VAL5 HIS6 ILE7 GLN8 ALA9 GLY10 GLN11 CYS12 GLY13 ASN14 GLN15 ILE16 GLY17 ALA18 LYS19 PHE20 TRP21 GLU22 VAL23 ILE24 SER25 ASP26 GLU27 HIS28 GLY29 ILE30 ASP31 PRO32 THR33 GLY34 SER35 TYR36 HIS37 GLY38 ASP39 SER40 ASP41 LEU42 GLN43 LEU44 GLU47 ARG48 ILE49 ASN50 VAL51 TYR52 TYR53 ASN54 GLU55 ALA56 ALA57 GLY58 ASN59 LYS60 TYR61 VAL62 PRO63 ARG64 ALA65 ILE66 LEU67 VAL68 ASP69 LEU70 GLU71 PRO72 GLY73 THR74 MET75 ASP76 SER77 VAL78 ARG79 SER80 GLY81 PRO82 PHE83 GLY84 GLN85 ILE86 PHE87 ARG88 PRO89 ASP90 ASN91 PHE92 VAL93 PHE94 GLY95 GLN96 SER97 GLY98 ALA99 GLY100 ASN101 ASN102 TRP103 ALA104 LYS105 GLY106 HIS107 TYR108 THR109 GLU110 GLY111 ALA112 GLU113 LEU114 VAL115 ASP116 SER117 VAL118 LEU119 ASP120 VAL121 VAL122 ARG123 LYS124 GLU125 SER126 GLU127 SER128 CYS129 ASP130 CYS131 LEU132 GLN133 GLY134 PHE135 GLN136 LEU137 THR138 HIS139 SER140 LEU141 GLY142 GLY143 GLY144 THR145 GLY146 SER147 GLY148 MET149 GLY150 THR151 LEU152 LEU153 ILE154 SER155 LYS156 ILE157 ARG158 GLU159 GLU160 TYR161 PRO162 ASP163 ARG164 ILE165 MET166 ASN167 THR168 PHE169 SER170 VAL171 VAL172 PRO173 SER174 PRO175 LYS176 VAL177 SER178 ASP179 THR180 VAL181 VAL182 GLU183 PRO184 TYR185 ASN186 ALA187 THR188 LEU189 SER190 VAL191 HIS192 GLN193 LEU194 VAL195 GLU196 ASN197 THR198 ASP199 GLU200 THR201 TYR202 CYS203 ILE204 ASP205 ASN206 GLU207 ALA208 LEU209 TYR210 ASP211 ILE212 CYS213 PHE214 ARG215 THR216 LEU217 LYS218 LEU219 THR220 THR221 PRO222 THR223 TYR224 GLY225 ASP226 LEU227 ASN228 HIS229 LEU230 VAL231 SER232 ALA233 THR234 MET235 SER236 GLY237 VAL238 THR239 THR240 CYS241 LEU242 ARG243 PHE244 PRO245 GLY246 GLN247 LEU248 ASN249 ALA250 ASP251 LEU252 ARG253 LYS254 LEU255 ALA256 VAL257 ASN258 MET259 VAL260 PRO261 PHE262 PRO263 ARG264 LEU265 HIS266 PHE267 PHE268 MET269 PRO270 GLY271 PHE272 ALA273 PRO274 LEU275 THR276 SER277 ARG278 GLY279 SER280 GLN281 GLN282 TYR283 ARG284 ALA285 LEU286 THR287 VAL288 PRO289 GLU290 LEU291 THR292 GLN293 GLN294 MET295 PHE296 ASP297 ALA298 LYS299 ASN300 MET301 MET302 ALA303 ALA304 CYS305 ASP306 PRO307 ARG308 HIS309 GLY310 ARG311 TYR312 LEU313 THR314 VAL315 ALA316 ALA317 VAL318 PHE319 ARG320 GLY321 ARG322 MET323 SER324 MET325 LYS326 GLU327 VAL328 ASP329 GLU330 GLN331 MET332 LEU333 ASN334 VAL335 GLN336 ASN337 LYS338 ASN339 SER340 SER341 TYR342 PHE343 VAL344 GLU345 TRP346 ILE347 PRO348 ASN349 ASN350 VAL351 LYS352 THR353 ALA354 VAL355 CYS356 ASP357 ILE358 PRO359 PRO360 ARG369 GLY370 LEU371 LYS372 MET373 SER374 ALA375 THR376 PHE377 ILE378 GLY379 ASN380 SER381 THR382 ALA383 ILE384 GLN385 GLU386 LEU387 PHE388 LYS389 ARG390 ILE391 SER392 GLU393 GLN394 PHE395 THR396 ALA397 MET398 PHE399 ARG400 ARG401 LYS402 ALA403 PHE404 LEU405 HIS406 TRP407 TYR408 THR409 GLY410 GLU411 GLY412 MET413 ASP414 GLU415 MET416 GLU417 PHE418 THR419 GLU420 ALA421 GLU422 SER423 ASN424 MET425 ASN426 ASP427 LEU428 VAL429 SER430 GLU431 TYR432 GLN433 GLN434 TYR435 GLN436 ASP437
Ligands
Unit 4 ADP401 MG402
Unit 5 MG501 ZN900
Unit 6 GTP500 GDP600 TA1601
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany