3DC8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DIHYDROPYRIMIDINASE FROM SINORHIZOBIUM
• Keywords: TIM-BARREL, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DC8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DIHYDROPYRIMIDINASE	A	483	3672	12
2	Protein	DIHYDROPYRIMIDINASE	B	475	3617	12
3	Ligand	DIHYDROPYRIMIDINASE	A	6	0	24
4	Ligand	DIHYDROPYRIMIDINASE	B	4	0	12
5	Water			1338	0	1338
total				2306	7289	1398

Proteins

Unit 1

SER 2 THR 3 VAL 4 ILE 5 LYS 6 GLY 7 GLY 8 THR 9 ILE 10 VAL 11 THR 12 ALA 13 ASP 14 LEU 15 THR 16 TYR 17 LYS 18 ALA 19 ASP 20 VAL 21 LYS 22 VAL 23 GLU 24 GLY 25 GLY 26 ARG 27 ILE 28 VAL 29 GLU 30 ILE 31 GLY 32 PRO 33 ASN 34 LEU 35 SER 36 GLY 37 ALA 38 GLU 39 THR 40 LEU 41 ASP 42 ALA 43 THR 44 GLY 45 CYS 46 TYR 47 VAL 48 MET 49 PRO 50 GLY 51 GLY 52 ILE 53 ASP 54 PRO 55 HIS 56 THR 57 HIS 58 LEU 59 GLU 60 MET 61 PRO 62 PHE 63 MET 64 GLY 65 THR 66 TYR 67 SER 68 SER 69 ASP 70 ASP 71 PHE 72 GLU 73 SER 74 GLY 75 THR 76 ARG 77 ALA 78 ALA 79 LEU 80 ALA 81 GLY 82 GLY 83 THR 84 THR 85 MET 86 VAL 87 VAL 88 ASP 89 PHE 90 ALA 91 LEU 92 PRO 93 SER 94 GLY 96 GLN 97 SER 98 LEU 99 LEU 100 GLU 101 ALA 102 LEU 103 THR 104 MET 105 TRP 106 ASP 107 ASN 108 LYS 109 SER 110 THR 111 ARG 112 ALA 113 ASN 114 CYS 115 ASP 116 TYR 117 SER 118 PHE 119 HIS 120 MET 121 ALA 122 ILE 123 THR 124 TRP 125 TRP 126 GLY 127 GLU 128 GLN 129 VAL 130 PHE 131 ASN 132 GLU 133 MET 134 GLU 135 THR 136 ILE 137 VAL 138 LYS 139 ASP 140 LYS 141 GLY 142 ILE 143 ASN 144 THR 145 PHE 146 KCX 147 HIS 148 PHE 149 MET 150 ALA 151 TYR 152 LYS 153 GLY 154 ALA 155 LEU 156 MET 157 VAL 158 ASP 159 ASP 160 ASP 161 GLU 162 MET 163 PHE 164 SER 165 SER 166 PHE 167 GLN 168 ARG 169 CYS 170 ALA 171 ALA 172 LEU 173 GLY 174 ALA 175 LEU 176 PRO 177 LEU 178 VAL 179 HIS 180 ALA 181 GLU 182 ASN 183 GLY 184 ASP 185 VAL 186 VAL 187 ALA 188 GLN 189 LEU 190 GLN 191 ALA 192 LYS 193 LEU 194 LEU 195 ALA 196 GLU 197 GLY 198 ASN 199 SER 200 GLY 201 PRO 202 GLU 203 ALA 204 HIS 205 ALA 206 TYR 207 SER 208 ARG 209 PRO 210 ALA 211 GLU 212 VAL 213 GLU 214 GLY 215 GLU 216 ALA 217 ALA 218 ASN 219 ARG 220 ALA 221 ILE 222 MET 223 ILE 224 ALA 225 ASP 226 MET 227 ALA 228 GLY 229 CYS 230 PRO 231 VAL 232 TYR 233 ILE 234 VAL 235 HIS 236 THR 237 SER 238 CYS 239 GLU 240 GLN 241 ALA 242 HIS 243 GLU 244 ALA 245 ILE 246 ARG 247 ARG 248 ALA 249 ARG 250 ALA 251 LYS 252 GLY 253 MET 254 ARG 255 VAL 256 PHE 257 GLY 258 GLU 259 PRO 260 LEU 261 ILE 262 GLN 263 HIS 264 LEU 265 THR 266 LEU 267 ASP 268 GLU 269 THR 270 GLU 271 TYR 272 PHE 273 ASP 274 LYS 275 ASP 276 TRP 277 ASP 278 HIS 279 ALA 280 ALA 281 ARG 282 ARG 283 VAL 284 MET 285 SER 286 PRO 287 PRO 288 PHE 289 ARG 290 ASN 291 LYS 292 LEU 293 HIS 294 GLN 295 ASP 296 SER 297 LEU 298 TRP 299 ALA 300 GLY 301 LEU 302 ALA 303 SER 304 GLY 305 SER 306 LEU 307 GLN 308 VAL 309 VAL 310 ALA 311 THR 312 ASP 313 HIS 314 CYS 315 ALA 316 PHE 317 THR 318 THR 319 GLU 320 GLN 321 LYS 322 ARG 323 PHE 324 GLY 325 VAL 326 GLY 327 ASP 328 PHE 329 THR 330 ARG 331 ILE 332 PRO 333 ASN 334 GLY 335 THR 336 GLY 337 GLY 338 LEU 339 GLU 340 ASP 341 ARG 342 MET 343 PRO 344 MET 345 LEU 346 TRP 347 THR 348 TYR 349 GLY 350 VAL 351 ALA 352 THR 353 GLY 354 ARG 355 ILE 356 THR 357 MET 358 ASN 359 GLU 360 PHE 361 VAL 362 ALA 363 VAL 364 THR 365 SER 366 THR 367 ASN 368 ILE 369 ALA 370 LYS 371 ILE 372 LEU 373 ASN 374 ILE 375 TYR 376 PRO 377 LYS 378 LYS 379 GLY 380 ALA 381 ILE 382 LEU 383 VAL 384 GLY 385 ALA 386 ASP 387 ALA 388 ASP 389 LEU 390 VAL 391 VAL 392 TRP 393 ASP 394 PRO 395 LYS 396 ARG 397 SER 398 LYS 399 THR 400 ILE 401 SER 402 ALA 403 LYS 404 THR 405 GLN 406 GLN 407 SER 408 ALA 409 ILE 410 ASP 411 TYR 412 ASN 413 VAL 414 PHE 415 GLU 416 GLY 417 LYS 418 THR 419 VAL 420 THR 421 GLY 422 LEU 423 PRO 424 ARG 425 PHE 426 THR 427 LEU 428 THR 429 ARG 430 GLY 431 VAL 432 VAL 433 SER 434 ILE 435 GLU 436 GLU 437 GLY 438 THR 439 VAL 440 LYS 441 THR 442 GLN 443 GLU 444 GLY 445 HIS 446 GLY 447 GLU 448 PHE 449 VAL 450 ARG 451 ARG 452 ASP 453 PRO 454 PHE 455 PRO 456 ALA 457 VAL 458 SER 459 THR 460 ALA 461 LEU 462 SER 463 THR 464 TRP 465 LYS 466 GLU 467 VAL 468 THR 469 ALA 470 PRO 471 ARG 472 ALA 473 VAL 474 GLN 475 ARG 476 SER 477 GLY 478 ILE 479 PRO 480 ALA 481 SER 482 GLY 483 VAL 484 HIS 485

Unit 2

SER 2 THR 3 VAL 4 ILE 5 LYS 6 GLY 7 GLY 8 THR 9 ILE 10 VAL 11 THR 12 ALA 13 ASP 14 LEU 15 THR 16 TYR 17 LYS 18 ALA 19 ASP 20 VAL 21 LYS 22 VAL 23 GLU 24 GLY 25 GLY 26 ARG 27 ILE 28 VAL 29 GLU 30 ILE 31 GLY 32 PRO 33 ASN 34 LEU 35 SER 36 GLY 37 ALA 38 GLU 39 THR 40 LEU 41 ASP 42 ALA 43 THR 44 GLY 45 CYS 46 TYR 47 VAL 48 MET 49 PRO 50 GLY 51 GLY 52 ILE 53 ASP 54 PRO 55 HIS 56 THR 57 HIS 58 LEU 59 GLU 60 MET 61 PRO 62 PHE 63 MET 64 GLY 65 THR 66 TYR 67 SER 68 SER 69 ASP 70 ASP 71 PHE 72 GLU 73 SER 74 GLY 75 THR 76 ARG 77 ALA 78 ALA 79 LEU 80 ALA 81 GLY 82 GLY 83 THR 84 THR 85 MET 86 VAL 87 VAL 88 ASP 89 PHE 90 ALA 91 LEU 92 PRO 93 SER 94 GLY 96 GLN 97 SER 98 LEU 99 LEU 100 GLU 101 ALA 102 LEU 103 THR 104 MET 105 TRP 106 ASP 107 ASN 108 LYS 109 SER 110 THR 111 ARG 112 ALA 113 ASN 114 CYS 115 ASP 116 TYR 117 SER 118 PHE 119 HIS 120 MET 121 ALA 122 ILE 123 THR 124 TRP 125 TRP 126 GLY 127 GLU 128 GLN 129 VAL 130 PHE 131 ASN 132 GLU 133 MET 134 GLU 135 THR 136 ILE 137 VAL 138 LYS 139 ASP 140 LYS 141 GLY 142 ILE 143 ASN 144 THR 145 PHE 146 KCX 147 HIS 148 PHE 149 MET 150 ALA 151 TYR 152 LYS 153 GLY 154 ALA 155 LEU 156 MET 157 VAL 158 ASP 159 ASP 160 ASP 161 GLU 162 MET 163 PHE 164 SER 165 SER 166 PHE 167 GLN 168 ARG 169 CYS 170 ALA 171 ALA 172 LEU 173 GLY 174 ALA 175 LEU 176 PRO 177 LEU 178 VAL 179 HIS 180 ALA 181 GLU 182 ASN 183 GLY 184 ASP 185 VAL 186 VAL 187 ALA 188 GLN 189 LEU 190 GLN 191 ALA 192 LYS 193 LEU 194 LEU 195 ALA 196 GLU 197 GLY 198 ASN 199 SER 200 GLY 201 PRO 202 GLU 203 ALA 204 HIS 205 ALA 206 TYR 207 SER 208 ARG 209 PRO 210 ALA 211 GLU 212 VAL 213 GLU 214 GLY 215 GLU 216 ALA 217 ALA 218 ASN 219 ARG 220 ALA 221 ILE 222 MET 223 ILE 224 ALA 225 ASP 226 MET 227 ALA 228 GLY 229 CYS 230 PRO 231 VAL 232 TYR 233 ILE 234 VAL 235 HIS 236 THR 237 SER 238 CYS 239 GLU 240 GLN 241 ALA 242 HIS 243 GLU 244 ALA 245 ILE 246 ARG 247 ARG 248 ALA 249 ARG 250 ALA 251 LYS 252 GLY 253 MET 254 ARG 255 VAL 256 PHE 257 GLY 258 GLU 259 PRO 260 LEU 261 ILE 262 GLN 263 HIS 264 LEU 265 THR 266 LEU 267 ASP 268 GLU 269 THR 270 GLU 271 TYR 272 PHE 273 ASP 274 LYS 275 ASP 276 TRP 277 ASP 278 HIS 279 ALA 280 ALA 281 ARG 282 ARG 283 VAL 284 MET 285 SER 286 PRO 287 PRO 288 PHE 289 ARG 290 ASN 291 LYS 292 LEU 293 HIS 294 GLN 295 ASP 296 SER 297 LEU 298 TRP 299 ALA 300 GLY 301 LEU 302 ALA 303 SER 304 GLY 305 SER 306 LEU 307 GLN 308 VAL 309 VAL 310 ALA 311 THR 312 ASP 313 HIS 314 CYS 315 ALA 316 PHE 317 THR 318 THR 319 GLU 320 GLN 321 LYS 322 ARG 323 PHE 324 GLY 325 VAL 326 GLY 327 ASP 328 PHE 329 THR 330 ARG 331 ILE 332 PRO 333 ASN 334 GLY 335 THR 336 GLY 337 GLY 338 LEU 339 GLU 340 ASP 341 ARG 342 MET 343 PRO 344 MET 345 LEU 346 TRP 347 THR 348 TYR 349 GLY 350 VAL 351 ALA 352 THR 353 GLY 354 ARG 355 ILE 356 THR 357 MET 358 ASN 359 GLU 360 PHE 361 VAL 362 ALA 363 VAL 364 THR 365 SER 366 THR 367 ASN 368 ILE 369 ALA 370 LYS 371 ILE 372 LEU 373 ASN 374 ILE 375 TYR 376 PRO 377 LYS 378 LYS 379 GLY 380 ALA 381 ILE 382 LEU 383 VAL 384 GLY 385 ALA 386 ASP 387 ALA 388 ASP 389 LEU 390 VAL 391 VAL 392 TRP 393 ASP 394 PRO 395 LYS 396 ARG 397 SER 398 LYS 399 THR 400 ILE 401 SER 402 ALA 403 LYS 404 THR 405 GLN 406 GLN 407 SER 408 ALA 409 ILE 410 ASP 411 TYR 412 ASN 413 VAL 414 PHE 415 GLU 416 GLY 417 LYS 418 THR 419 VAL 420 THR 421 GLY 422 LEU 423 PRO 424 ARG 425 PHE 426 THR 427 LEU 428 THR 429 ARG 430 GLY 431 VAL 432 VAL 433 SER 434 ILE 435 GLU 436 GLU 437 GLY 438 THR 439 VAL 440 LYS 441 THR 442 GLN 443 GLU 444 GLY 445 HIS 446 GLY 447 GLU 448 PHE 449 VAL 450 ARG 451 ARG 452 ASP 453 PRO 454 PHE 455 PRO 456 ALA 457 VAL 458 SER 459 THR 460 ALA 461 LEU 462 SER 463 THR 464 TRP 465 LYS 466 GLU 467 VAL 468 THR 469 ALA 470 PRO 471 ARG 472 ALA 473 VAL 474 GLN 475 ARG 476 SER 477

Ligands

Unit 3	ZN 501 ZN 502 ACT 503 GOL 504 GOL 505 GOL 506
Unit 4	ZN 501 ZN 502 ACT 503 GOL 504