3DC2 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SERINE BOUND D-3-PHOSPHOGLYCERATE DEHYD FROM MYCOBACTERIUM TUBERCULOSIS
• Keywords: OXIDOREDUCTASE, PHOSPHOGLYCERATE DEHYDROGENASE, SERINE BIOSY AMINO-ACID BIOSYNTHESIS, NAD
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DC2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	A	526	3830	0
2	Protein	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	B	523	3810	0
3	Protein	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	A	1	0	7
4	Protein	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	B	1	0	7
5	Ligand	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	A	1	0	10
6	Ligand	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	B	2	0	20
7	Water			77	0	77
total				1131	7640	121

Proteins

Unit 1	LEU 4 PRO 5 VAL 6 VAL 7 LEU 8 ILE 9 ALA 10 ASP 11 LYS 12 LEU 13 ALA 14 PRO 15 SER 16 THR 17 VAL 18 ALA 19 ALA 20 LEU 21 GLY 22 ASP 23 GLN 24 VAL 25 GLU 26 VAL 27 ARG 28 TRP 29 VAL 30 ASP 31 GLY 32 PRO 33 ASP 34 ARG 35 ASP 36 LYS 37 LEU 38 LEU 39 ALA 40 ALA 41 VAL 42 PRO 43 GLU 44 ALA 45 ASP 46 ALA 47 LEU 48 LEU 49 VAL 50 ARG 51 SER 52 ALA 53 THR 54 THR 55 VAL 56 ASP 57 ALA 58 GLU 59 VAL 60 LEU 61 ALA 62 ALA 63 ALA 64 PRO 65 LYS 66 LEU 67 LYS 68 ILE 69 VAL 70 ALA 71 ARG 72 ALA 73 GLY 74 VAL 75 GLY 76 LEU 77 ASP 78 ASN 79 VAL 80 ASP 81 VAL 82 ASP 83 ALA 84 ALA 85 THR 86 ALA 87 ARG 88 GLY 89 VAL 90 LEU 91 VAL 92 VAL 93 ASN 94 ALA 95 PRO 96 THR 97 SER 98 ASN 99 ILE 100 HIS 101 SER 102 ALA 103 ALA 104 GLU 105 HIS 106 ALA 107 LEU 108 ALA 109 LEU 110 LEU 111 LEU 112 ALA 113 ALA 114 SER 115 ARG 116 GLN 117 ILE 118 PRO 119 ALA 120 ALA 121 ASP 122 ALA 123 SER 124 LEU 125 ARG 126 GLU 127 HIS 128 THR 129 TRP 130 LYS 131 ARG 132 SER 133 SER 134 PHE 135 SER 136 GLY 137 THR 138 GLU 139 ILE 140 PHE 141 GLY 142 LYS 143 THR 144 VAL 145 GLY 146 VAL 147 VAL 148 GLY 149 LEU 150 GLY 151 ARG 152 ILE 153 GLY 154 GLN 155 LEU 156 VAL 157 ALA 158 GLN 159 ARG 160 ILE 161 ALA 162 ALA 163 PHE 164 GLY 165 ALA 166 TYR 167 VAL 168 VAL 169 ALA 170 TYR 171 ASP 172 PRO 173 TYR 174 VAL 175 SER 176 PRO 177 ALA 178 ARG 179 ALA 180 ALA 181 GLN 182 LEU 183 GLY 184 ILE 185 GLU 186 LEU 187 LEU 188 SER 189 LEU 190 ASP 191 ASP 192 LEU 193 LEU 194 ALA 195 ARG 196 ALA 197 ASP 198 PHE 199 ILE 200 SER 201 VAL 202 HIS 203 LEU 204 PRO 205 LYS 206 THR 207 PRO 208 GLU 209 THR 210 ALA 211 GLY 212 LEU 213 ILE 214 ASP 215 LYS 216 GLU 217 ALA 218 LEU 219 ALA 220 LYS 221 THR 222 LYS 223 PRO 224 GLY 225 VAL 226 ILE 227 ILE 228 VAL 229 ASN 230 ALA 231 ALA 232 ARG 233 GLY 234 GLY 235 LEU 236 VAL 237 ASP 238 GLU 239 ALA 240 ALA 241 LEU 242 ALA 243 ASP 244 ALA 245 ILE 246 THR 247 GLY 248 GLY 249 HIS 250 VAL 251 ARG 252 ALA 253 ALA 254 GLY 255 LEU 256 ASP 257 VAL 258 PHE 259 ALA 260 THR 261 GLU 262 PRO 263 CYS 264 THR 265 ASP 266 SER 267 PRO 268 LEU 269 PHE 270 GLU 271 LEU 272 ALA 273 GLN 274 VAL 275 VAL 276 VAL 277 THR 278 PRO 279 HIS 280 LEU 281 GLY 282 ALA 283 SER 284 THR 285 ALA 286 GLU 287 ALA 288 GLN 289 ASP 290 ARG 291 ALA 292 GLY 293 THR 294 ASP 295 VAL 296 ALA 297 GLU 298 SER 299 VAL 300 ARG 301 LEU 302 ALA 303 LEU 304 ALA 305 GLY 306 GLU 307 PHE 308 VAL 309 PRO 310 ASP 311 ALA 312 VAL 313 ASN 314 VAL 315 GLY 316 GLY 317 GLY 318 VAL 319 VAL 320 ASN 321 GLU 322 GLU 323 VAL 324 ALA 325 PRO 326 TRP 327 LEU 328 ASP 329 LEU 330 VAL 331 ARG 332 LYS 333 LEU 334 GLY 335 VAL 336 LEU 337 ALA 338 GLY 339 VAL 340 LEU 341 SER 342 ASP 343 GLU 344 LEU 345 PRO 346 VAL 347 SER 348 LEU 349 SER 350 VAL 351 GLN 352 VAL 353 ARG 354 GLY 355 GLU 356 LEU 357 ALA 358 ALA 359 GLU 360 GLU 361 VAL 362 GLU 363 VAL 364 LEU 365 ARG 366 LEU 367 SER 368 ALA 369 LEU 370 ARG 371 GLY 372 LEU 373 PHE 374 SER 375 ALA 376 VAL 377 ILE 378 GLU 379 ASP 380 ALA 381 VAL 382 THR 383 PHE 384 VAL 385 ASN 386 ALA 387 PRO 388 ALA 389 LEU 390 ALA 391 ALA 392 GLU 393 ARG 394 GLY 395 VAL 396 THR 397 ALA 398 GLU 399 ILE 400 CYS 401 LYS 402 ALA 403 SER 404 GLU 405 SER 406 PRO 407 ASN 408 HIS 409 ARG 410 SER 411 VAL 412 VAL 413 ASP 414 VAL 415 ARG 416 ALA 417 VAL 418 GLY 419 ALA 420 ASP 421 GLY 422 SER 423 VAL 424 VAL 425 THR 426 VAL 427 SER 428 GLY 429 THR 430 LEU 431 TYR 432 GLY 433 PRO 434 GLN 435 LEU 436 SER 437 GLN 438 LYS 439 ILE 440 VAL 441 GLN 442 ILE 443 ASN 444 GLY 445 ARG 446 HIS 447 PHE 448 ASP 449 LEU 450 ARG 451 ALA 452 GLN 453 GLY 454 ILE 455 ASN 456 LEU 457 ILE 458 ILE 459 HIS 460 TYR 461 VAL 462 ASP 463 ARG 464 PRO 465 GLY 466 ALA 467 LEU 468 GLY 469 LYS 470 ILE 471 GLY 472 THR 473 LEU 474 LEU 475 GLY 476 THR 477 ALA 478 GLY 479 VAL 480 ASN 481 ILE 482 GLN 483 ALA 484 ALA 485 GLN 486 LEU 487 SER 488 GLU 489 ASP 490 ALA 491 GLU 492 GLY 493 PRO 494 GLY 495 ALA 496 THR 497 ILE 498 LEU 499 LEU 500 ARG 501 LEU 502 ASP 503 GLN 504 ASP 505 VAL 506 PRO 507 ASP 508 ASP 509 VAL 510 ARG 511 THR 512 ALA 513 ILE 514 ALA 515 ALA 516 ALA 517 VAL 518 ASP 519 ALA 520 TYR 521 LYS 522 LEU 523 GLU 524 VAL 525 VAL 526 ASP 527 LEU 528 SER 529
Unit 2	LEU 4 PRO 5 VAL 6 VAL 7 LEU 8 ILE 9 ALA 10 ASP 11 LYS 12 LEU 13 ALA 14 PRO 15 SER 16 THR 17 VAL 18 ALA 19 ALA 20 LEU 21 GLY 22 ASP 23 GLN 24 VAL 25 GLU 26 VAL 27 ARG 28 TRP 29 VAL 30 ASP 31 GLY 32 PRO 33 ASP 34 ARG 35 ASP 36 LYS 37 LEU 38 LEU 39 ALA 40 ALA 41 VAL 42 PRO 43 GLU 44 ALA 45 ASP 46 ALA 47 LEU 48 LEU 49 VAL 50 ARG 51 SER 52 ALA 53 THR 54 THR 55 VAL 56 ASP 57 ALA 58 GLU 59 VAL 60 LEU 61 ALA 62 ALA 63 ALA 64 PRO 65 LYS 66 LEU 67 LYS 68 ILE 69 VAL 70 ALA 71 ARG 72 ALA 73 GLY 74 VAL 75 GLY 76 LEU 77 ASP 78 ASN 79 VAL 80 ASP 81 VAL 82 ASP 83 ALA 84 ALA 85 THR 86 ALA 87 ARG 88 GLY 89 VAL 90 LEU 91 VAL 92 VAL 93 ASN 94 ALA 95 PRO 96 THR 97 SER 98 ASN 99 ILE 100 HIS 101 SER 102 ALA 103 ALA 104 GLU 105 HIS 106 ALA 107 LEU 108 ALA 109 LEU 110 LEU 111 LEU 112 ALA 113 ALA 114 SER 115 ARG 116 GLN 117 ILE 118 PRO 119 ALA 120 ALA 121 ASP 122 ALA 123 SER 124 LEU 125 ARG 126 GLU 127 HIS 128 THR 129 TRP 130 LYS 131 ARG 132 SER 133 SER 134 PHE 135 SER 136 GLY 137 THR 138 GLU 139 ILE 140 PHE 141 GLY 142 LYS 143 THR 144 VAL 145 GLY 146 VAL 147 VAL 148 GLY 149 LEU 150 GLY 151 ARG 152 ILE 153 GLY 154 GLN 155 LEU 156 VAL 157 ALA 158 GLN 159 ARG 160 ILE 161 ALA 162 ALA 163 PHE 164 GLY 165 ALA 166 TYR 167 VAL 168 VAL 169 ALA 170 TYR 171 ASP 172 PRO 173 TYR 174 VAL 175 SER 176 PRO 177 ALA 178 ARG 179 ALA 180 ALA 181 GLN 182 LEU 183 GLY 184 ILE 185 GLU 186 LEU 187 LEU 188 SER 189 LEU 190 ASP 191 ASP 192 LEU 193 LEU 194 ALA 195 ARG 196 ALA 197 ASP 198 PHE 199 ILE 200 SER 201 VAL 202 HIS 203 LEU 204 PRO 205 LYS 206 THR 207 PRO 208 GLU 209 THR 210 ALA 211 GLY 212 LEU 213 ILE 214 ASP 215 LYS 216 GLU 217 ALA 218 LEU 219 ALA 220 LYS 221 THR 222 LYS 223 PRO 224 GLY 225 VAL 226 ILE 227 ILE 228 VAL 229 ASN 230 ALA 231 ALA 232 ARG 233 GLY 234 GLY 235 LEU 236 VAL 237 ASP 238 GLU 239 ALA 240 ALA 241 LEU 242 ALA 243 ASP 244 ALA 245 ILE 246 THR 247 GLY 248 GLY 249 HIS 250 VAL 251 ARG 252 ALA 253 ALA 254 GLY 255 LEU 256 ASP 257 VAL 258 PHE 259 ALA 260 THR 261 GLU 262 PRO 263 CYS 264 THR 265 ASP 266 SER 267 PRO 268 LEU 269 PHE 270 GLU 271 LEU 272 ALA 273 GLN 274 VAL 275 VAL 276 VAL 277 THR 278 PRO 279 HIS 280 LEU 281 GLY 282 ALA 283 SER 284 THR 285 ALA 286 GLU 287 ALA 288 GLN 289 ASP 290 ARG 291 ALA 292 GLY 293 THR 294 ASP 295 VAL 296 ALA 297 GLU 298 SER 299 VAL 300 ARG 301 LEU 302 ALA 303 LEU 304 ALA 305 GLY 306 GLU 307 PHE 308 VAL 309 PRO 310 ASP 311 ALA 312 VAL 313 ASN 314 VAL 315 GLY 316 GLY 317 GLY 318 VAL 319 VAL 320 ASN 321 GLU 322 GLU 323 VAL 324 ALA 325 PRO 326 TRP 327 LEU 328 ASP 329 LEU 330 VAL 331 ARG 332 LYS 333 LEU 334 GLY 335 VAL 336 LEU 337 ALA 338 GLY 339 VAL 340 LEU 341 SER 342 ASP 343 GLU 344 LEU 345 PRO 346 VAL 347 SER 348 LEU 349 SER 350 VAL 351 GLN 352 VAL 353 ARG 354 GLY 355 GLU 356 LEU 357 ALA 358 ALA 359 GLU 360 GLU 361 VAL 362 GLU 363 VAL 364 LEU 365 ARG 366 LEU 367 SER 368 ALA 369 LEU 370 ARG 371 GLY 372 LEU 373 PHE 374 SER 375 ALA 376 VAL 377 ILE 378 GLU 379 THR 383 PHE 384 VAL 385 ASN 386 ALA 387 PRO 388 ALA 389 LEU 390 ALA 391 ALA 392 GLU 393 ARG 394 GLY 395 VAL 396 THR 397 ALA 398 GLU 399 ILE 400 CYS 401 LYS 402 ALA 403 SER 404 GLU 405 SER 406 PRO 407 ASN 408 HIS 409 ARG 410 SER 411 VAL 412 VAL 413 ASP 414 VAL 415 ARG 416 ALA 417 VAL 418 GLY 419 ALA 420 ASP 421 GLY 422 SER 423 VAL 424 VAL 425 THR 426 VAL 427 SER 428 GLY 429 THR 430 LEU 431 TYR 432 GLY 433 PRO 434 GLN 435 LEU 436 SER 437 GLN 438 LYS 439 ILE 440 VAL 441 GLN 442 ILE 443 ASN 444 GLY 445 ARG 446 HIS 447 PHE 448 ASP 449 LEU 450 ARG 451 ALA 452 GLN 453 GLY 454 ILE 455 ASN 456 LEU 457 ILE 458 ILE 459 HIS 460 TYR 461 VAL 462 ASP 463 ARG 464 PRO 465 GLY 466 ALA 467 LEU 468 GLY 469 LYS 470 ILE 471 GLY 472 THR 473 LEU 474 LEU 475 GLY 476 THR 477 ALA 478 GLY 479 VAL 480 ASN 481 ILE 482 GLN 483 ALA 484 ALA 485 GLN 486 LEU 487 SER 488 GLU 489 ASP 490 ALA 491 GLU 492 GLY 493 PRO 494 GLY 495 ALA 496 THR 497 ILE 498 LEU 499 LEU 500 ARG 501 LEU 502 ASP 503 GLN 504 ASP 505 VAL 506 PRO 507 ASP 508 ASP 509 VAL 510 ARG 511 THR 512 ALA 513 ILE 514 ALA 515 ALA 516 ALA 517 VAL 518 ASP 519 ALA 520 TYR 521 LYS 522 LEU 523 GLU 524 VAL 525 VAL 526 ASP 527 LEU 528 SER 529
Unit 3	SER 600
Unit 4	SER 600

Ligands

Unit 5	TLA 700
Unit 6	TLA 700 TLA 701