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Sequence, Chains, Asymmetric and Biological Units

Title SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFER PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- II
Keywords SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS PHOSPHO-CTD, PHOSPHOPROTEIN, RNA-BINDING, TRANSCRIPTION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3D9M     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA-BINDING PROTEIN 16  A 138 1121 0
2  Protein   RNA-BINDING PROTEIN 16  B 140 1143 0
3  Protein   CTD-PEPTIDE  Y 3 25 0
4  Protein   CTD-PEPTIDE  Z 9 58 10
5  Ligand   RNA-BINDING PROTEIN 16  A 5 0 21
6  Ligand   RNA-BINDING PROTEIN 16  B 4 0 16
7 Water     161 0 161
total       460 2347 208

Proteins
Unit 1 GLU2 ALA3 VAL4 LYS5 THR6 PHE7 ASN8 SER9 GLU10 LEU11 TYR12 SER13 LEU14 ASN15 ASP16 TYR17 LYS18 PRO19 PRO20 ILE21 SER22 LYS23 ALA24 LYS25 MET26 THR27 GLN28 ILE29 THR30 LYS31 ALA32 ALA33 ILE34 LYS35 ALA36 ILE37 LYS38 PHE39 TYR40 LYS41 HIS42 VAL43 VAL44 GLN45 SER46 VAL47 GLU48 LYS49 PHE50 ILE51 GLN52 LYS53 CYS54 LYS55 PRO56 GLU57 TYR58 LYS59 VAL60 PRO61 GLY62 LEU63 TYR64 VAL65 ILE66 ASP67 SER68 ILE69 VAL70 ARG71 GLN72 SER73 ARG74 HIS75 GLN76 PHE77 GLY78 GLN79 GLU80 LYS81 ASP82 VAL83 PHE84 ALA85 PRO86 ARG87 PHE88 SER89 ASN90 ASN91 ILE92 ILE93 SER94 THR95 PHE96 GLN97 ASN98 LEU99 TYR100 ARG101 CYS102 PRO103 GLY104 ASP105 ASP106 LYS107 SER108 LYS109 ILE110 VAL111 ARG112 VAL113 LEU114 ASN115 LEU116 TRP117 GLN118 LYS119 ASN120 ASN121 VAL122 PHE123 LYS124 SER125 GLU126 ILE127 ILE128 GLN129 PRO130 LEU131 LEU132 ASP133 MET134 ALA135 ALA136 ALA137 LEU138 GLU139
Unit 2 MET1 GLU2 ALA3 VAL4 LYS5 THR6 PHE7 ASN8 SER9 GLU10 LEU11 TYR12 SER13 LEU14 ASN15 ASP16 TYR17 LYS18 PRO19 PRO20 ILE21 SER22 LYS23 ALA24 LYS25 MET26 THR27 GLN28 ILE29 THR30 LYS31 ALA32 ALA33 ILE34 LYS35 ALA36 ILE37 LYS38 PHE39 TYR40 LYS41 HIS42 VAL43 VAL44 GLN45 SER46 VAL47 GLU48 LYS49 PHE50 ILE51 GLN52 LYS53 CYS54 LYS55 PRO56 GLU57 TYR58 LYS59 VAL60 PRO61 GLY62 LEU63 TYR64 VAL65 ILE66 ASP67 SER68 ILE69 VAL70 ARG71 GLN72 SER73 ARG74 HIS75 GLN76 PHE77 GLY78 GLN79 GLU80 LYS81 ASP82 VAL83 PHE84 ALA85 PRO86 ARG87 PHE88 SER89 ASN90 ASN91 ILE92 ILE93 SER94 THR95 PHE96 GLN97 ASN98 LEU99 TYR100 ARG101 CYS102 PRO103 GLY104 ASP105 ASP106 LYS107 SER108 LYS109 ILE110 VAL111 ARG112 VAL113 LEU114 ASN115 LEU116 TRP117 GLN118 LYS119 ASN120 ASN121 VAL122 PHE123 LYS124 SER125 GLU126 ILE127 ILE128 GLN129 PRO130 LEU131 LEU132 ASP133 MET134 ALA135 ALA136 ALA137 LEU138 GLU139 HIS140
Unit 3 TYR1 SER2 PRO3
Unit 4 PRO-1 SER0 TYR1 SER2 PRO3 THR4 SEP5 PRO6 SER7

Ligands
Unit 5 NH4400 SO4501 SO4503 SO4507 SO4508
Unit 6 NH4401 SO4504 SO4506 SO4509

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany