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Sequence, Chains, Asymmetric and Biological Units

Title NITROALKANE OXIDASE: MUTANT D402N CRYSTALLIZED WITH 1-NITROH
Keywords OXIDOREDUCTASE FLAVOENZYME, NITROALKANE, ACYL-COA DEHYDROGEN CELL EDGE, FAD, INHIBITOR, FLAVOPROTEIN, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3D9D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NITROALKANE OXIDASE  A 432 3312 0
2  Protein   NITROALKANE OXIDASE  B 431 3300 0
3  Protein   NITROALKANE OXIDASE  C 430 3301 0
4  Protein   NITROALKANE OXIDASE  D 431 3306 0
5  Ligand   NITROALKANE OXIDASE  A 4 0 74
6  Ligand   NITROALKANE OXIDASE  B 4 0 74
7  Ligand   NITROALKANE OXIDASE  C 4 0 74
8  Ligand   NITROALKANE OXIDASE  D 4 0 74
9 Water     650 0 650
total       2390 13219 946
Proteins
Unit 1 VAL2 ASP3 PHE4 LYS5 LEU6 SER7 PRO8 SER9 GLN10 LEU11 GLU12 ALA13 ARG14 ARG15 HIS16 ALA17 GLN18 ALA19 PHE20 ALA21 ASN22 THR23 VAL24 LEU25 THR26 LYS27 ALA28 SER29 ALA30 GLU31 TYR32 SER33 THR34 GLN35 LYS36 ASP37 GLN38 LEU39 SER40 ARG41 PHE42 GLN43 ALA44 THR45 ARG46 PRO47 PHE48 TYR49 ARG50 GLU51 ALA52 VAL53 ARG54 HIS55 GLY56 LEU57 ILE58 LYS59 ALA60 GLN61 VAL62 PRO63 ILE64 PRO65 LEU66 GLY67 GLY68 THR69 MET70 GLU71 SER72 LEU73 VAL74 HIS75 GLU76 SER77 ILE78 ILE79 LEU80 GLU81 GLU82 LEU83 PHE84 ALA85 VAL86 GLU87 PRO88 ALA89 THR90 SER91 ILE92 THR93 ILE94 VAL95 ALA96 THR97 ALA98 LEU99 GLY100 LEU101 MET102 PRO103 VAL104 ILE105 LEU106 CYS107 ASP108 SER109 PRO110 SER111 LEU112 GLN113 GLU114 LYS115 PHE116 LEU117 LYS118 PRO119 PHE120 ILE121 SER122 GLY123 GLU124 GLY125 GLU126 PRO127 LEU128 ALA129 SER130 LEU131 MET132 HIS133 SER134 GLU135 PRO136 ASN137 GLY138 THR139 ALA140 ASN141 TRP142 LEU143 GLN144 LYS145 GLY146 GLY147 PRO148 GLY149 LEU150 GLN151 THR152 THR153 ALA154 ARG155 LYS156 VAL157 GLY158 ASN159 GLU160 TRP161 VAL162 ILE163 SER164 GLY165 GLU166 LYS167 LEU168 TRP169 PRO170 SER171 ASN172 SER173 GLY174 GLY175 TRP176 ASP177 TYR178 LYS179 GLY180 ALA181 ASP182 LEU183 ALA184 CYS185 VAL186 VAL187 CYS188 ARG189 VAL190 SER191 ASP192 ASP193 PRO194 SER195 LYS196 PRO197 GLN198 ASP199 PRO200 ASN201 VAL202 ASP203 PRO204 ALA205 THR206 GLN207 ILE208 ALA209 VAL210 LEU211 LEU212 VAL213 THR214 ARG215 GLU216 THR217 ILE218 ALA219 ASN220 ASN221 LYS222 LYS223 ASP224 ALA225 TYR226 GLN227 ILE228 LEU229 GLY230 GLU231 PRO232 GLU233 LEU234 ALA235 GLY236 HIS237 ILE238 THR239 THR240 SER241 GLY242 PRO243 HIS244 THR245 ARG246 PHE247 THR248 GLU249 PHE250 HIS251 VAL252 PRO253 HIS254 GLU255 ASN256 LEU257 LEU258 CYS259 THR260 PRO261 GLY262 LEU263 LYS264 ALA265 GLN266 GLY267 LEU268 VAL269 GLU270 THR271 ALA272 PHE273 ALA274 MET275 SER276 ALA277 ALA278 LEU279 VAL280 GLY281 ALA282 MET283 ALA284 ILE285 GLY286 THR287 ALA288 ARG289 ALA290 ALA291 PHE292 GLU293 GLU294 ALA295 LEU296 VAL297 PHE298 ALA299 LYS300 SER301 ASP302 THR303 ARG304 GLY305 GLY306 SER307 LYS308 HIS309 ILE310 ILE311 GLU312 HIS313 GLN314 SER315 VAL316 ALA317 ASP318 LYS319 LEU320 ILE321 ASP322 CYS323 LYS324 ILE325 ARG326 LEU327 GLU328 THR329 SER330 ARG331 LEU332 LEU333 VAL334 TRP335 LYS336 ALA337 VAL338 THR339 THR340 LEU341 GLU342 ASP343 GLU344 ALA345 LEU346 GLU347 TRP348 LYS349 VAL350 LYS351 LEU352 GLU353 MET354 ALA355 MET356 GLN357 THR358 LYS359 ILE360 TYR361 THR362 THR363 ASP364 VAL365 ALA366 VAL367 GLU368 CYS369 VAL370 ILE371 ASP372 ALA373 MET374 LYS375 ALA376 VAL377 GLY378 MET379 LYS380 SER381 TYR382 ALA383 LYS384 ASP385 MET386 SER387 PHE388 PRO389 ARG390 LEU391 LEU392 ASN393 GLU394 VAL395 MET396 CYS397 TYR398 PRO399 LEU400 PHE401 ASN402 GLY403 GLY404 ASN405 ILE406 GLY407 LEU408 ARG409 ARG410 ARG411 GLN412 MET413 GLN414 ARG415 VAL416 MET417 ALA418 LEU419 GLU420 ASP421 TYR422 GLU423 PRO424 TRP425 ALA426 ALA427 THR428 TYR429 GLY430 SER431 SER432 LYS433
Unit 2 VAL2 ASP3 PHE4 LYS5 LEU6 SER7 PRO8 SER9 GLN10 LEU11 GLU12 ALA13 ARG14 ARG15 HIS16 ALA17 GLN18 ALA19 PHE20 ALA21 ASN22 THR23 VAL24 LEU25 THR26 LYS27 ALA28 SER29 ALA30 GLU31 TYR32 SER33 THR34 GLN35 LYS36 ASP37 GLN38 LEU39 SER40 ARG41 PHE42 GLN43 ALA44 THR45 ARG46 PRO47 PHE48 TYR49 ARG50 GLU51 ALA52 VAL53 ARG54 HIS55 GLY56 LEU57 ILE58 LYS59 ALA60 GLN61 VAL62 PRO63 ILE64 PRO65 LEU66 GLY67 GLY68 THR69 MET70 GLU71 SER72 LEU73 VAL74 HIS75 GLU76 SER77 ILE78 ILE79 LEU80 GLU81 GLU82 LEU83 PHE84 ALA85 VAL86 GLU87 PRO88 ALA89 THR90 SER91 ILE92 THR93 ILE94 VAL95 ALA96 THR97 ALA98 LEU99 GLY100 LEU101 MET102 PRO103 VAL104 ILE105 LEU106 CYS107 ASP108 SER109 PRO110 SER111 LEU112 GLN113 GLU114 LYS115 PHE116 LEU117 LYS118 PRO119 PHE120 ILE121 SER122 GLY123 GLU124 GLY125 GLU126 PRO127 LEU128 ALA129 SER130 LEU131 MET132 HIS133 SER134 GLU135 PRO136 ASN137 GLY138 THR139 ALA140 ASN141 TRP142 LEU143 GLN144 LYS145 GLY146 GLY147 PRO148 GLY149 LEU150 GLN151 THR152 THR153 ALA154 ARG155 LYS156 VAL157 GLY158 ASN159 GLU160 TRP161 VAL162 ILE163 SER164 GLY165 GLU166 LYS167 LEU168 TRP169 PRO170 SER171 ASN172 SER173 GLY174 GLY175 TRP176 ASP177 TYR178 LYS179 GLY180 ALA181 ASP182 LEU183 ALA184 CYS185 VAL186 VAL187 CYS188 ARG189 VAL190 SER191 ASP192 ASP193 PRO194 SER195 LYS196 PRO197 GLN198 ASP199 PRO200 ASN201 VAL202 ASP203 PRO204 ALA205 THR206 GLN207 ILE208 ALA209 VAL210 LEU211 LEU212 VAL213 THR214 ARG215 GLU216 THR217 ILE218 ALA219 ASN220 ASN221 LYS222 LYS223 ASP224 ALA225 TYR226 GLN227 ILE228 LEU229 GLY230 GLU231 PRO232 GLU233 LEU234 ALA235 GLY236 HIS237 ILE238 THR239 THR240 SER241 GLY242 PRO243 HIS244 THR245 ARG246 PHE247 THR248 GLU249 PHE250 HIS251 VAL252 PRO253 HIS254 GLU255 ASN256 LEU257 LEU258 CYS259 THR260 PRO261 GLY262 LEU263 LYS264 ALA265 GLN266 GLY267 LEU268 VAL269 GLU270 THR271 ALA272 PHE273 ALA274 MET275 SER276 ALA277 ALA278 LEU279 VAL280 GLY281 ALA282 MET283 ALA284 ILE285 GLY286 THR287 ALA288 ARG289 ALA290 ALA291 PHE292 GLU293 GLU294 ALA295 LEU296 VAL297 PHE298 ALA299 LYS300 SER301 ASP302 THR303 ARG304 GLY305 GLY306 SER307 LYS308 HIS309 ILE310 ILE311 GLU312 HIS313 GLN314 SER315 VAL316 ALA317 ASP318 LYS319 LEU320 ILE321 ASP322 CYS323 LYS324 ILE325 ARG326 LEU327 GLU328 THR329 SER330 ARG331 LEU332 LEU333 VAL334 TRP335 LYS336 ALA337 VAL338 THR339 THR340 LEU341 GLU342 ASP343 GLU344 ALA345 LEU346 GLU347 TRP348 LYS349 VAL350 LYS351 LEU352 GLU353 MET354 ALA355 MET356 GLN357 THR358 LYS359 ILE360 TYR361 THR362 THR363 ASP364 VAL365 ALA366 VAL367 GLU368 CYS369 VAL370 ILE371 ASP372 ALA373 MET374 LYS375 ALA376 VAL377 GLY378 MET379 LYS380 SER381 TYR382 ALA383 LYS384 ASP385 MET386 SER387 PHE388 PRO389 ARG390 LEU391 LEU392 ASN393 GLU394 VAL395 MET396 CYS397 TYR398 PRO399 LEU400 PHE401 ASN402 GLY403 GLY404 ASN405 ILE406 GLY407 LEU408 ARG409 ARG410 ARG411 GLN412 MET413 GLN414 ARG415 VAL416 MET417 ALA418 LEU419 GLU420 ASP421 TYR422 GLU423 PRO424 TRP425 ALA426 ALA427 THR428 TYR429 GLY430 SER431 SER432
Unit 3 VAL2 ASP3 PHE4 LYS5 LEU6 SER7 PRO8 SER9 GLN10 LEU11 GLU12 ALA13 ARG14 ARG15 HIS16 ALA17 GLN18 ALA19 PHE20 ALA21 ASN22 THR23 VAL24 LEU25 THR26 LYS27 ALA28 SER29 ALA30 GLU31 TYR32 SER33 THR34 GLN35 LYS36 ASP37 GLN38 LEU39 SER40 ARG41 PHE42 GLN43 ALA44 THR45 ARG46 PRO47 PHE48 TYR49 ARG50 GLU51 ALA52 VAL53 ARG54 HIS55 GLY56 LEU57 ILE58 LYS59 ALA60 GLN61 VAL62 PRO63 ILE64 PRO65 LEU66 GLY67 GLY68 THR69 MET70 GLU71 SER72 LEU73 VAL74 HIS75 GLU76 SER77 ILE78 ILE79 LEU80 GLU81 GLU82 LEU83 PHE84 ALA85 VAL86 GLU87 PRO88 ALA89 THR90 SER91 ILE92 THR93 ILE94 VAL95 ALA96 THR97 ALA98 LEU99 GLY100 LEU101 MET102 PRO103 VAL104 ILE105 LEU106 CYS107 ASP108 SER109 PRO110 SER111 LEU112 GLN113 GLU114 LYS115 PHE116 LEU117 LYS118 PRO119 PHE120 ILE121 SER122 GLY123 GLU124 GLY125 GLU126 PRO127 LEU128 ALA129 SER130 LEU131 MET132 HIS133 SER134 GLU135 PRO136 ASN137 GLY138 THR139 ALA140 ASN141 TRP142 LEU143 GLN144 LYS145 GLY146 GLY147 PRO148 GLY149 LEU150 GLN151 THR152 THR153 ALA154 ARG155 LYS156 VAL157 GLY158 ASN159 GLU160 TRP161 VAL162 ILE163 SER164 GLY165 GLU166 LYS167 LEU168 TRP169 PRO170 SER171 ASN172 SER173 GLY174 GLY175 TRP176 ASP177 TYR178 LYS179 GLY180 ALA181 ASP182 LEU183 ALA184 CYS185 VAL186 VAL187 CYS188 ARG189 VAL190 SER191 ASP192 ASP193 PRO194 SER195 LYS196 PRO197 GLN198 ASP199 PRO200 ASN201 VAL202 ASP203 PRO204 ALA205 THR206 GLN207 ILE208 ALA209 VAL210 LEU211 LEU212 VAL213 THR214 ARG215 GLU216 THR217 ILE218 ALA219 ASN220 ASN221 LYS222 LYS223 ASP224 ALA225 TYR226 GLN227 ILE228 LEU229 GLY230 GLU231 PRO232 GLU233 LEU234 ALA235 GLY236 HIS237 ILE238 THR239 THR240 SER241 GLY242 PRO243 HIS244 THR245 ARG246 PHE247 THR248 GLU249 PHE250 HIS251 VAL252 PRO253 HIS254 GLU255 ASN256 LEU257 LEU258 CYS259 THR260 PRO261 GLY262 LEU263 LYS264 ALA265 GLN266 GLY267 LEU268 VAL269 GLU270 THR271 ALA272 PHE273 ALA274 MET275 SER276 ALA277 ALA278 LEU279 VAL280 GLY281 ALA282 MET283 ALA284 ILE285 GLY286 THR287 ALA288 ARG289 ALA290 ALA291 PHE292 GLU293 GLU294 ALA295 LEU296 VAL297 PHE298 ALA299 LYS300 SER301 ASP302 THR303 ARG304 GLY305 GLY306 SER307 LYS308 HIS309 ILE310 ILE311 GLU312 HIS313 GLN314 SER315 VAL316 ALA317 ASP318 LYS319 LEU320 ILE321 ASP322 CYS323 LYS324 ILE325 ARG326 LEU327 GLU328 THR329 SER330 ARG331 LEU332 LEU333 VAL334 TRP335 LYS336 ALA337 VAL338 THR339 THR340 LEU341 GLU342 ASP343 GLU344 ALA345 LEU346 GLU347 TRP348 LYS349 VAL350 LYS351 LEU352 GLU353 MET354 ALA355 MET356 GLN357 THR358 LYS359 ILE360 TYR361 THR362 THR363 ASP364 VAL365 ALA366 VAL367 GLU368 CYS369 VAL370 ILE371 ASP372 ALA373 MET374 LYS375 ALA376 VAL377 GLY378 MET379 LYS380 SER381 TYR382 ALA383 LYS384 ASP385 MET386 SER387 PHE388 PRO389 ARG390 LEU391 LEU392 ASN393 GLU394 VAL395 MET396 CYS397 TYR398 PRO399 LEU400 PHE401 ASN402 GLY403 GLY404 ASN405 ILE406 GLY407 LEU408 ARG409 ARG410 ARG411 GLN412 MET413 GLN414 ARG415 VAL416 MET417 ALA418 LEU419 GLU420 ASP421 TYR422 GLU423 PRO424 TRP425 ALA426 ALA427 THR428 TYR429 GLY430 SER431
Unit 4 VAL2 ASP3 PHE4 LYS5 LEU6 SER7 PRO8 SER9 GLN10 LEU11 GLU12 ALA13 ARG14 ARG15 HIS16 ALA17 GLN18 ALA19 PHE20 ALA21 ASN22 THR23 VAL24 LEU25 THR26 LYS27 ALA28 SER29 ALA30 GLU31 TYR32 SER33 THR34 GLN35 LYS36 ASP37 GLN38 LEU39 SER40 ARG41 PHE42 GLN43 ALA44 THR45 ARG46 PRO47 PHE48 TYR49 ARG50 GLU51 ALA52 VAL53 ARG54 HIS55 GLY56 LEU57 ILE58 LYS59 ALA60 GLN61 VAL62 PRO63 ILE64 PRO65 LEU66 GLY67 GLY68 THR69 MET70 GLU71 SER72 LEU73 VAL74 HIS75 GLU76 SER77 ILE78 ILE79 LEU80 GLU81 GLU82 LEU83 PHE84 ALA85 VAL86 GLU87 PRO88 ALA89 THR90 SER91 ILE92 THR93 ILE94 VAL95 ALA96 THR97 ALA98 LEU99 GLY100 LEU101 MET102 PRO103 VAL104 ILE105 LEU106 CYS107 ASP108 SER109 PRO110 SER111 LEU112 GLN113 GLU114 LYS115 PHE116 LEU117 LYS118 PRO119 PHE120 ILE121 SER122 GLY123 GLU124 GLY125 GLU126 PRO127 LEU128 ALA129 SER130 LEU131 MET132 HIS133 SER134 GLU135 PRO136 ASN137 GLY138 THR139 ALA140 ASN141 TRP142 LEU143 GLN144 LYS145 GLY146 GLY147 PRO148 GLY149 LEU150 GLN151 THR152 THR153 ALA154 ARG155 LYS156 VAL157 GLY158 ASN159 GLU160 TRP161 VAL162 ILE163 SER164 GLY165 GLU166 LYS167 LEU168 TRP169 PRO170 SER171 ASN172 SER173 GLY174 GLY175 TRP176 ASP177 TYR178 LYS179 GLY180 ALA181 ASP182 LEU183 ALA184 CYS185 VAL186 VAL187 CYS188 ARG189 VAL190 SER191 ASP192 ASP193 PRO194 SER195 LYS196 PRO197 GLN198 ASP199 PRO200 ASN201 VAL202 ASP203 PRO204 ALA205 THR206 GLN207 ILE208 ALA209 VAL210 LEU211 LEU212 VAL213 THR214 ARG215 GLU216 THR217 ILE218 ALA219 ASN220 ASN221 LYS222 LYS223 ASP224 ALA225 TYR226 GLN227 ILE228 LEU229 GLY230 GLU231 PRO232 GLU233 LEU234 ALA235 GLY236 HIS237 ILE238 THR239 THR240 SER241 GLY242 PRO243 HIS244 THR245 ARG246 PHE247 THR248 GLU249 PHE250 HIS251 VAL252 PRO253 HIS254 GLU255 ASN256 LEU257 LEU258 CYS259 THR260 PRO261 GLY262 LEU263 LYS264 ALA265 GLN266 GLY267 LEU268 VAL269 GLU270 THR271 ALA272 PHE273 ALA274 MET275 SER276 ALA277 ALA278 LEU279 VAL280 GLY281 ALA282 MET283 ALA284 ILE285 GLY286 THR287 ALA288 ARG289 ALA290 ALA291 PHE292 GLU293 GLU294 ALA295 LEU296 VAL297 PHE298 ALA299 LYS300 SER301 ASP302 THR303 ARG304 GLY305 GLY306 SER307 LYS308 HIS309 ILE310 ILE311 GLU312 HIS313 GLN314 SER315 VAL316 ALA317 ASP318 LYS319 LEU320 ILE321 ASP322 CYS323 LYS324 ILE325 ARG326 LEU327 GLU328 THR329 SER330 ARG331 LEU332 LEU333 VAL334 TRP335 LYS336 ALA337 VAL338 THR339 THR340 LEU341 GLU342 ASP343 GLU344 ALA345 LEU346 GLU347 TRP348 LYS349 VAL350 LYS351 LEU352 GLU353 MET354 ALA355 MET356 GLN357 THR358 LYS359 ILE360 TYR361 THR362 THR363 ASP364 VAL365 ALA366 VAL367 GLU368 CYS369 VAL370 ILE371 ASP372 ALA373 MET374 LYS375 ALA376 VAL377 GLY378 MET379 LYS380 SER381 TYR382 ALA383 LYS384 ASP385 MET386 SER387 PHE388 PRO389 ARG390 LEU391 LEU392 ASN393 GLU394 VAL395 MET396 CYS397 TYR398 PRO399 LEU400 PHE401 ASN402 GLY403 GLY404 ASN405 ILE406 GLY407 LEU408 ARG409 ARG410 ARG411 GLN412 MET413 GLN414 ARG415 VAL416 MET417 ALA418 LEU419 GLU420 ASP421 TYR422 GLU423 PRO424 TRP425 ALA426 ALA427 THR428 TYR429 GLY430 SER431 SER432
Ligands
Unit 5 FAD500 N6C600 GOL700 GOL701
Unit 6 FAD500 N6C600 GOL700 GOL701
Unit 7 FAD500 N6C600 GOL700 GOL701
Unit 8 FAD500 N6C600 GOL700 GOL701
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany