3D5O - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL RECOGNITION AND FUNCTIONAL ACTIVATION OF FCRR BY PENTRAXINS
• Keywords: COMPLEX STRUCTURE, SAP, FC RIIA, FC RECEPTOR ACTIVATION, PEN AMYLOID, GLYCOPROTEIN, LECTIN, METAL-BINDING, SECRETED, CEL MEMBRANE, IGG-BINDING PROTEIN, IMMUNOGLOBULIN DOMAIN, MEMBR PHOSPHOPROTEIN, RECEPTOR, TRANSMEMBRANE, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3D5O	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SERUM AMYLOID P-COMPONENT	A	204	1638	0
2	Protein	SERUM AMYLOID P-COMPONENT	B	204	1642	0
3	Protein	SERUM AMYLOID P-COMPONENT	C	204	1624	0
4	Protein	SERUM AMYLOID P-COMPONENT	D	204	1620	0
5	Protein	SERUM AMYLOID P-COMPONENT	E	204	1631	0
6	Protein		F	171	1313	0
7	Ligand	SERUM AMYLOID P-COMPONENT	A	4	0	29
8	Ligand	SERUM AMYLOID P-COMPONENT	B	4	0	29
9	Ligand	SERUM AMYLOID P-COMPONENT	C	4	0	29
10	Ligand	SERUM AMYLOID P-COMPONENT	D	4	0	29
11	Ligand	SERUM AMYLOID P-COMPONENT	E	4	0	29
12	Ligand		F	2	0	11
13	Water			31	0	31
total				1244	9468	187

Proteins

Unit 1	HIS 1 THR 2 ASP 3 LEU 4 SER 5 GLY 6 LYS 7 VAL 8 PHE 9 VAL 10 PHE 11 PRO 12 ARG 13 GLU 14 SER 15 VAL 16 THR 17 ASP 18 HIS 19 VAL 20 ASN 21 LEU 22 ILE 23 THR 24 PRO 25 LEU 26 GLU 27 LYS 28 PRO 29 LEU 30 GLN 31 ASN 32 PHE 33 THR 34 LEU 35 CYS 36 PHE 37 ARG 38 ALA 39 TYR 40 SER 41 ASP 42 LEU 43 SER 44 ARG 45 ALA 46 TYR 47 SER 48 LEU 49 PHE 50 SER 51 TYR 52 ASN 53 THR 54 GLN 55 GLY 56 ARG 57 ASP 58 ASN 59 GLU 60 LEU 61 LEU 62 VAL 63 TYR 64 LYS 65 GLU 66 ARG 67 VAL 68 GLY 69 GLU 70 TYR 71 SER 72 LEU 73 TYR 74 ILE 75 GLY 76 ARG 77 HIS 78 LYS 79 VAL 80 THR 81 SER 82 LYS 83 VAL 84 ILE 85 GLU 86 LYS 87 PHE 88 PRO 89 ALA 90 PRO 91 VAL 92 HIS 93 ILE 94 CYS 95 VAL 96 SER 97 TRP 98 GLU 99 SER 100 SER 101 SER 102 GLY 103 ILE 104 ALA 105 GLU 106 PHE 107 TRP 108 ILE 109 ASN 110 GLY 111 THR 112 PRO 113 LEU 114 VAL 115 LYS 116 LYS 117 GLY 118 LEU 119 ARG 120 GLN 121 GLY 122 TYR 123 PHE 124 VAL 125 GLU 126 ALA 127 GLN 128 PRO 129 LYS 130 ILE 131 VAL 132 LEU 133 GLY 134 GLN 135 GLU 136 GLN 137 ASP 138 SER 139 TYR 140 GLY 141 GLY 142 LYS 143 PHE 144 ASP 145 ARG 146 SER 147 GLN 148 SER 149 PHE 150 VAL 151 GLY 152 GLU 153 ILE 154 GLY 155 ASP 156 LEU 157 TYR 158 MET 159 TRP 160 ASP 161 SER 162 VAL 163 LEU 164 PRO 165 PRO 166 GLU 167 ASN 168 ILE 169 LEU 170 SER 171 ALA 172 TYR 173 GLN 174 GLY 175 THR 176 PRO 177 LEU 178 PRO 179 ALA 180 ASN 181 ILE 182 LEU 183 ASP 184 TRP 185 GLN 186 ALA 187 LEU 188 ASN 189 TYR 190 GLU 191 ILE 192 ARG 193 GLY 194 TYR 195 VAL 196 ILE 197 ILE 198 LYS 199 PRO 200 LEU 201 VAL 202 TRP 203 VAL 204
Unit 2	HIS 1 THR 2 ASP 3 LEU 4 SER 5 GLY 6 LYS 7 VAL 8 PHE 9 VAL 10 PHE 11 PRO 12 ARG 13 GLU 14 SER 15 VAL 16 THR 17 ASP 18 HIS 19 VAL 20 ASN 21 LEU 22 ILE 23 THR 24 PRO 25 LEU 26 GLU 27 LYS 28 PRO 29 LEU 30 GLN 31 ASN 32 PHE 33 THR 34 LEU 35 CYS 36 PHE 37 ARG 38 ALA 39 TYR 40 SER 41 ASP 42 LEU 43 SER 44 ARG 45 ALA 46 TYR 47 SER 48 LEU 49 PHE 50 SER 51 TYR 52 ASN 53 THR 54 GLN 55 GLY 56 ARG 57 ASP 58 ASN 59 GLU 60 LEU 61 LEU 62 VAL 63 TYR 64 LYS 65 GLU 66 ARG 67 VAL 68 GLY 69 GLU 70 TYR 71 SER 72 LEU 73 TYR 74 ILE 75 GLY 76 ARG 77 HIS 78 LYS 79 VAL 80 THR 81 SER 82 LYS 83 VAL 84 ILE 85 GLU 86 LYS 87 PHE 88 PRO 89 ALA 90 PRO 91 VAL 92 HIS 93 ILE 94 CYS 95 VAL 96 SER 97 TRP 98 GLU 99 SER 100 SER 101 SER 102 GLY 103 ILE 104 ALA 105 GLU 106 PHE 107 TRP 108 ILE 109 ASN 110 GLY 111 THR 112 PRO 113 LEU 114 VAL 115 LYS 116 LYS 117 GLY 118 LEU 119 ARG 120 GLN 121 GLY 122 TYR 123 PHE 124 VAL 125 GLU 126 ALA 127 GLN 128 PRO 129 LYS 130 ILE 131 VAL 132 LEU 133 GLY 134 GLN 135 GLU 136 GLN 137 ASP 138 SER 139 TYR 140 GLY 141 GLY 142 LYS 143 PHE 144 ASP 145 ARG 146 SER 147 GLN 148 SER 149 PHE 150 VAL 151 GLY 152 GLU 153 ILE 154 GLY 155 ASP 156 LEU 157 TYR 158 MET 159 TRP 160 ASP 161 SER 162 VAL 163 LEU 164 PRO 165 PRO 166 GLU 167 ASN 168 ILE 169 LEU 170 SER 171 ALA 172 TYR 173 GLN 174 GLY 175 THR 176 PRO 177 LEU 178 PRO 179 ALA 180 ASN 181 ILE 182 LEU 183 ASP 184 TRP 185 GLN 186 ALA 187 LEU 188 ASN 189 TYR 190 GLU 191 ILE 192 ARG 193 GLY 194 TYR 195 VAL 196 ILE 197 ILE 198 LYS 199 PRO 200 LEU 201 VAL 202 TRP 203 VAL 204
Unit 3	HIS 1 THR 2 ASP 3 LEU 4 SER 5 GLY 6 LYS 7 VAL 8 PHE 9 VAL 10 PHE 11 PRO 12 ARG 13 GLU 14 SER 15 VAL 16 THR 17 ASP 18 HIS 19 VAL 20 ASN 21 LEU 22 ILE 23 THR 24 PRO 25 LEU 26 GLU 27 LYS 28 PRO 29 LEU 30 GLN 31 ASN 32 PHE 33 THR 34 LEU 35 CYS 36 PHE 37 ARG 38 ALA 39 TYR 40 SER 41 ASP 42 LEU 43 SER 44 ARG 45 ALA 46 TYR 47 SER 48 LEU 49 PHE 50 SER 51 TYR 52 ASN 53 THR 54 GLN 55 GLY 56 ARG 57 ASP 58 ASN 59 GLU 60 LEU 61 LEU 62 VAL 63 TYR 64 LYS 65 GLU 66 ARG 67 VAL 68 GLY 69 GLU 70 TYR 71 SER 72 LEU 73 TYR 74 ILE 75 GLY 76 ARG 77 HIS 78 LYS 79 VAL 80 THR 81 SER 82 LYS 83 VAL 84 ILE 85 GLU 86 LYS 87 PHE 88 PRO 89 ALA 90 PRO 91 VAL 92 HIS 93 ILE 94 CYS 95 VAL 96 SER 97 TRP 98 GLU 99 SER 100 SER 101 SER 102 GLY 103 ILE 104 ALA 105 GLU 106 PHE 107 TRP 108 ILE 109 ASN 110 GLY 111 THR 112 PRO 113 LEU 114 VAL 115 LYS 116 LYS 117 GLY 118 LEU 119 ARG 120 GLN 121 GLY 122 TYR 123 PHE 124 VAL 125 GLU 126 ALA 127 GLN 128 PRO 129 LYS 130 ILE 131 VAL 132 LEU 133 GLY 134 GLN 135 GLU 136 GLN 137 ASP 138 SER 139 TYR 140 GLY 141 GLY 142 LYS 143 PHE 144 ASP 145 ARG 146 SER 147 GLN 148 SER 149 PHE 150 VAL 151 GLY 152 GLU 153 ILE 154 GLY 155 ASP 156 LEU 157 TYR 158 MET 159 TRP 160 ASP 161 SER 162 VAL 163 LEU 164 PRO 165 PRO 166 GLU 167 ASN 168 ILE 169 LEU 170 SER 171 ALA 172 TYR 173 GLN 174 GLY 175 THR 176 PRO 177 LEU 178 PRO 179 ALA 180 ASN 181 ILE 182 LEU 183 ASP 184 TRP 185 GLN 186 ALA 187 LEU 188 ASN 189 TYR 190 GLU 191 ILE 192 ARG 193 GLY 194 TYR 195 VAL 196 ILE 197 ILE 198 LYS 199 PRO 200 LEU 201 VAL 202 TRP 203 VAL 204
Unit 4	HIS 1 THR 2 ASP 3 LEU 4 SER 5 GLY 6 LYS 7 VAL 8 PHE 9 VAL 10 PHE 11 PRO 12 ARG 13 GLU 14 SER 15 VAL 16 THR 17 ASP 18 HIS 19 VAL 20 ASN 21 LEU 22 ILE 23 THR 24 PRO 25 LEU 26 GLU 27 LYS 28 PRO 29 LEU 30 GLN 31 ASN 32 PHE 33 THR 34 LEU 35 CYS 36 PHE 37 ARG 38 ALA 39 TYR 40 SER 41 ASP 42 LEU 43 SER 44 ARG 45 ALA 46 TYR 47 SER 48 LEU 49 PHE 50 SER 51 TYR 52 ASN 53 THR 54 GLN 55 GLY 56 ARG 57 ASP 58 ASN 59 GLU 60 LEU 61 LEU 62 VAL 63 TYR 64 LYS 65 GLU 66 ARG 67 VAL 68 GLY 69 GLU 70 TYR 71 SER 72 LEU 73 TYR 74 ILE 75 GLY 76 ARG 77 HIS 78 LYS 79 VAL 80 THR 81 SER 82 LYS 83 VAL 84 ILE 85 GLU 86 LYS 87 PHE 88 PRO 89 ALA 90 PRO 91 VAL 92 HIS 93 ILE 94 CYS 95 VAL 96 SER 97 TRP 98 GLU 99 SER 100 SER 101 SER 102 GLY 103 ILE 104 ALA 105 GLU 106 PHE 107 TRP 108 ILE 109 ASN 110 GLY 111 THR 112 PRO 113 LEU 114 VAL 115 LYS 116 LYS 117 GLY 118 LEU 119 ARG 120 GLN 121 GLY 122 TYR 123 PHE 124 VAL 125 GLU 126 ALA 127 GLN 128 PRO 129 LYS 130 ILE 131 VAL 132 LEU 133 GLY 134 GLN 135 GLU 136 GLN 137 ASP 138 SER 139 TYR 140 GLY 141 GLY 142 LYS 143 PHE 144 ASP 145 ARG 146 SER 147 GLN 148 SER 149 PHE 150 VAL 151 GLY 152 GLU 153 ILE 154 GLY 155 ASP 156 LEU 157 TYR 158 MET 159 TRP 160 ASP 161 SER 162 VAL 163 LEU 164 PRO 165 PRO 166 GLU 167 ASN 168 ILE 169 LEU 170 SER 171 ALA 172 TYR 173 GLN 174 GLY 175 THR 176 PRO 177 LEU 178 PRO 179 ALA 180 ASN 181 ILE 182 LEU 183 ASP 184 TRP 185 GLN 186 ALA 187 LEU 188 ASN 189 TYR 190 GLU 191 ILE 192 ARG 193 GLY 194 TYR 195 VAL 196 ILE 197 ILE 198 LYS 199 PRO 200 LEU 201 VAL 202 TRP 203 VAL 204
Unit 5	HIS 1 THR 2 ASP 3 LEU 4 SER 5 GLY 6 LYS 7 VAL 8 PHE 9 VAL 10 PHE 11 PRO 12 ARG 13 GLU 14 SER 15 VAL 16 THR 17 ASP 18 HIS 19 VAL 20 ASN 21 LEU 22 ILE 23 THR 24 PRO 25 LEU 26 GLU 27 LYS 28 PRO 29 LEU 30 GLN 31 ASN 32 PHE 33 THR 34 LEU 35 CYS 36 PHE 37 ARG 38 ALA 39 TYR 40 SER 41 ASP 42 LEU 43 SER 44 ARG 45 ALA 46 TYR 47 SER 48 LEU 49 PHE 50 SER 51 TYR 52 ASN 53 THR 54 GLN 55 GLY 56 ARG 57 ASP 58 ASN 59 GLU 60 LEU 61 LEU 62 VAL 63 TYR 64 LYS 65 GLU 66 ARG 67 VAL 68 GLY 69 GLU 70 TYR 71 SER 72 LEU 73 TYR 74 ILE 75 GLY 76 ARG 77 HIS 78 LYS 79 VAL 80 THR 81 SER 82 LYS 83 VAL 84 ILE 85 GLU 86 LYS 87 PHE 88 PRO 89 ALA 90 PRO 91 VAL 92 HIS 93 ILE 94 CYS 95 VAL 96 SER 97 TRP 98 GLU 99 SER 100 SER 101 SER 102 GLY 103 ILE 104 ALA 105 GLU 106 PHE 107 TRP 108 ILE 109 ASN 110 GLY 111 THR 112 PRO 113 LEU 114 VAL 115 LYS 116 LYS 117 GLY 118 LEU 119 ARG 120 GLN 121 GLY 122 TYR 123 PHE 124 VAL 125 GLU 126 ALA 127 GLN 128 PRO 129 LYS 130 ILE 131 VAL 132 LEU 133 GLY 134 GLN 135 GLU 136 GLN 137 ASP 138 SER 139 TYR 140 GLY 141 GLY 142 LYS 143 PHE 144 ASP 145 ARG 146 SER 147 GLN 148 SER 149 PHE 150 VAL 151 GLY 152 GLU 153 ILE 154 GLY 155 ASP 156 LEU 157 TYR 158 MET 159 TRP 160 ASP 161 SER 162 VAL 163 LEU 164 PRO 165 PRO 166 GLU 167 ASN 168 ILE 169 LEU 170 SER 171 ALA 172 TYR 173 GLN 174 GLY 175 THR 176 PRO 177 LEU 178 PRO 179 ALA 180 ASN 181 ILE 182 LEU 183 ASP 184 TRP 185 GLN 186 ALA 187 LEU 188 ASN 189 TYR 190 GLU 191 ILE 192 ARG 193 GLY 194 TYR 195 VAL 196 ILE 197 ILE 198 LYS 199 PRO 200 LEU 201 VAL 202 TRP 203 VAL 204
Unit 6	ALA 1 PRO 2 PRO 3 LYS 4 ALA 5 VAL 6 LEU 7 LYS 8 LEU 9 GLU 10 PRO 11 PRO 12 TRP 13 ILE 14 ASN 15 VAL 16 LEU 17 GLN 18 GLU 19 ASP 20 SER 21 VAL 22 THR 23 LEU 24 THR 25 CYS 26 GLN 27 GLY 28 ALA 29 ARG 30 SER 31 PRO 32 GLU 33 SER 34 ASP 35 SER 36 ILE 37 GLN 38 TRP 39 PHE 40 HIS 41 ASN 42 GLY 43 ASN 44 LEU 45 ILE 46 PRO 47 THR 48 HIS 49 THR 50 GLN 51 PRO 52 SER 53 TYR 54 ARG 55 PHE 56 LYS 57 ALA 58 ASN 59 ASN 60 ASN 61 ASP 62 SER 63 GLY 64 GLU 65 TYR 66 THR 67 CYS 68 GLN 69 THR 70 GLY 71 GLN 72 THR 73 SER 74 LEU 75 SER 76 ASP 77 PRO 78 VAL 79 HIS 80 LEU 81 THR 82 VAL 83 LEU 84 SER 85 GLU 86 TRP 87 LEU 88 VAL 89 LEU 90 GLN 91 THR 92 PRO 93 HIS 94 LEU 95 GLU 96 PHE 97 GLN 98 GLU 99 GLY 100 GLU 101 THR 102 ILE 103 MET 104 LEU 105 ARG 106 CYS 107 HIS 108 SER 109 TRP 110 LYS 111 ASP 112 LYS 113 PRO 114 LEU 115 VAL 116 LYS 117 VAL 118 THR 119 PHE 120 PHE 121 GLN 122 ASN 123 GLY 124 LYS 125 SER 126 GLN 127 LYS 128 PHE 129 SER 130 ARG 131 LEU 132 ASP 133 PRO 134 THR 135 PHE 136 SER 137 ILE 138 PRO 139 GLN 140 ALA 141 ASN 142 HIS 143 SER 144 HIS 145 SER 146 GLY 147 ASP 148 TYR 149 HIS 150 CYS 151 THR 152 GLY 153 ASN 154 ILE 155 GLY 156 TYR 157 THR 158 LEU 159 PHE 160 SER 161 SER 162 LYS 163 PRO 164 VAL 165 THR 166 ILE 167 THR 168 VAL 169 GLN 170 VAL 171

Ligands

Unit 7	SO4 205 SO4 206 SO4 207 NAG 208
Unit 8	SO4 205 SO4 206 SO4 207 NAG 208
Unit 9	SO4 205 SO4 206 SO4 207 NAG 208
Unit 10	SO4 205 SO4 206 SO4 207 NAG 208
Unit 11	SO4 205 SO4 206 SO4 207 NAG 208
Unit 12	SO4 178 GOL 179