3D4R - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A DUF2118 FAMILY PROTEIN (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION
• Keywords: STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, J PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3D4R	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	158	1209	40
2	Protein		B	157	1188	40
3	Protein		C	158	1199	40
4	Protein		D	158	1171	40
5	Protein		E	151	1140	40
6	Protein		F	158	1215	40
7	Ligand		A	2	0	8
8	Ligand		C	2	0	8
9	Ligand		D	2	0	11
10	Ligand		E	2	0	8
11	Ligand		F	3	0	12
12	Water			532	0	532
total				1483	7122	819

Proteins

Unit 1	HIS -7 GLU -6 ASN -5 LEU -4 TYR -3 PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 ASP 33 GLU 34 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150
Unit 2	GLU -6 ASN -5 LEU -4 TYR -3 PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 ASP 33 GLU 34 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150
Unit 3	HIS -7 GLU -6 ASN -5 LEU -4 TYR -3 PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 ASP 33 GLU 34 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150
Unit 4	HIS -7 GLU -6 ASN -5 LEU -4 TYR -3 PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 ASP 33 GLU 34 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150
Unit 5	PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150
Unit 6	HIS -7 GLU -6 ASN -5 LEU -4 TYR -3 PHE -2 GLN -1 GLY 0 MSE 1 LYS 2 ILE 3 PRO 4 LYS 5 ILE 6 TYR 7 VAL 8 GLU 9 GLY 10 GLU 11 LEU 12 ASN 13 ASP 14 GLY 15 ASP 16 ARG 17 VAL 18 ALA 19 ILE 20 GLU 21 LYS 22 ASP 23 GLY 24 ASN 25 ALA 26 ILE 27 ILE 28 PHE 29 LEU 30 GLU 31 LYS 32 ASP 33 GLU 34 GLU 35 TYR 36 SER 37 GLY 38 ASN 39 GLY 40 LYS 41 LEU 42 LEU 43 TYR 44 GLN 45 VAL 46 ILE 47 TYR 48 ASP 49 ASP 50 LEU 51 ALA 52 LYS 53 TYR 54 MSE 55 SER 56 LEU 57 ASP 58 THR 59 LEU 60 LYS 61 LYS 62 ASP 63 VAL 64 LEU 65 ILE 66 GLN 67 TYR 68 PRO 69 ASP 70 LYS 71 HIS 72 THR 73 LEU 74 THR 75 TYR 76 LEU 77 LYS 78 ALA 79 GLY 80 THR 81 LYS 82 LEU 83 ILE 84 SER 85 VAL 86 PRO 87 ALA 88 GLU 89 GLY 90 TYR 91 LYS 92 VAL 93 TYR 94 PRO 95 ILE 96 MSE 97 ASP 98 PHE 99 GLY 100 PHE 101 ARG 102 VAL 103 LEU 104 LYS 105 GLY 106 TYR 107 ARG 108 LEU 109 ALA 110 THR 111 LEU 112 GLU 113 SER 114 LYS 115 LYS 116 GLY 117 ASP 118 LEU 119 ARG 120 TYR 121 VAL 122 ASN 123 SER 124 PRO 125 VAL 126 SER 127 GLY 128 THR 129 VAL 130 ILE 131 PHE 132 MSE 133 ASN 134 GLU 135 ILE 136 PRO 137 SER 138 GLU 139 ARG 140 ALA 141 ASN 142 TYR 143 VAL 144 PHE 145 TYR 146 MSE 147 LEU 148 GLU 149 GLU 150

Ligands

Unit 7	EDO 151 EDO 152
Unit 8	EDO 151 EDO 152
Unit 9	EDO 151 PEG 152
Unit 10	EDO 151 EDO 152
Unit 11	EDO 151 EDO 152 EDO 153