3D4P - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE FROM STAPHYLOCOCC COMPLEXED WITH NAD AND PYRUVATE
• Keywords: LACTATE DEHYDROGENASE, STAPHYLOCOCCUS AUREUS, NAD, PYRUVATE, CYTOPLASM, GLYCOLYSIS, OXIDOREDUCTASE, PHOSPHOPROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3D4P	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	L-LACTATE DEHYDROGENASE 1	A	307	2356	0
2	Protein	L-LACTATE DEHYDROGENASE 1	B	310	2374	0
3	Ligand	L-LACTATE DEHYDROGENASE 1	A	2	0	50
4	Ligand	L-LACTATE DEHYDROGENASE 1	B	2	0	50
5	Water			305	0	305
total				926	4730	405

Proteins

Unit 1

PHE 4 LYS 5 GLY 6 ASN 7 LYS 8 VAL 9 VAL 10 LEU 11 ILE 12 GLY 13 ASN 14 GLY 15 ALA 16 VAL 17 GLY 18 SER 19 SER 20 TYR 21 ALA 22 PHE 23 SER 24 LEU 25 VAL 26 ASN 27 GLN 28 SER 29 ILE 30 VAL 31 ASP 32 GLU 33 LEU 34 VAL 35 ILE 36 ILE 37 ASP 38 LEU 39 ASP 40 THR 41 GLU 42 LYS 43 VAL 44 ARG 45 GLY 46 ASP 47 VAL 48 MET 49 ASP 50 LEU 51 LYS 52 HIS 53 ALA 54 THR 55 PRO 56 TYR 57 SER 58 PRO 59 THR 60 THR 61 VAL 62 ARG 63 VAL 64 LYS 65 ALA 66 GLY 67 GLU 68 TYR 69 SER 70 ASP 71 CYS 72 HIS 73 ASP 74 ALA 75 ASP 76 LEU 77 VAL 78 VAL 79 ILE 80 CYS 81 ALA 82 GLY 83 ALA 84 ALA 85 GLN 86 LYS 87 PRO 88 THR 91 ARG 92 LEU 93 ASP 94 LEU 95 VAL 96 SER 97 LYS 98 ASN 99 LEU 100 LYS 101 ILE 102 PHE 103 LYS 104 SER 105 ILE 106 VAL 107 GLY 108 GLU 109 VAL 110 MET 111 ALA 112 SER 113 LYS 114 PHE 115 ASP 116 GLY 117 ILE 118 PHE 119 LEU 120 VAL 121 ALA 122 THR 123 ASN 124 PRO 125 VAL 126 ASP 127 ILE 128 LEU 129 ALA 130 TYR 131 ALA 132 THR 133 TRP 134 LYS 135 PHE 136 SER 137 GLY 138 LEU 139 PRO 140 LYS 141 GLU 142 ARG 143 VAL 144 ILE 145 GLY 146 SER 147 GLY 148 THR 149 ILE 150 LEU 151 ASP 152 SER 153 ALA 154 ARG 155 PHE 156 ARG 157 LEU 158 LEU 159 LEU 160 SER 161 GLU 162 ALA 163 PHE 164 ASP 165 VAL 166 ALA 167 PRO 168 ARG 169 SER 170 VAL 171 ASP 172 ALA 173 GLN 174 ILE 175 ILE 176 GLY 177 GLU 178 HIS 179 GLY 180 ASP 181 THR 182 GLU 183 LEU 184 PRO 185 VAL 186 TRP 187 SER 188 HIS 189 ALA 190 ASN 191 ILE 192 ALA 193 GLY 194 GLN 195 PRO 196 LEU 197 LYS 198 THR 199 LEU 200 LEU 201 GLU 202 GLN 203 ARG 204 PRO 205 GLU 206 GLY 207 LYS 208 ALA 209 GLN 210 ILE 211 GLU 212 GLN 213 ILE 214 PHE 215 VAL 216 GLN 217 THR 218 ARG 219 ASP 220 ALA 221 ALA 222 TYR 223 ASP 224 ILE 225 ILE 226 GLN 227 ALA 228 LYS 229 GLY 230 ALA 231 THR 232 TYR 233 TYR 234 GLY 235 VAL 236 ALA 237 MET 238 GLY 239 LEU 240 ALA 241 ARG 242 ILE 243 THR 244 GLU 245 ALA 246 ILE 247 PHE 248 ARG 249 ASN 250 GLU 251 ASP 252 ALA 253 VAL 254 LEU 255 THR 256 VAL 257 SER 258 ALA 259 LEU 260 LEU 261 GLU 262 GLY 263 GLU 264 TYR 265 GLU 266 GLU 267 GLU 268 ASP 269 VAL 270 TYR 271 ILE 272 GLY 273 VAL 274 PRO 275 ALA 276 VAL 277 ILE 278 ASN 279 ARG 280 ASN 281 GLY 282 ILE 283 ARG 284 ASN 285 VAL 286 VAL 287 GLU 288 ILE 289 PRO 290 LEU 291 ASN 292 ASP 293 GLU 294 GLU 295 GLN 296 SER 297 LYS 298 PHE 299 ALA 300 HIS 301 SER 302 ALA 303 LYS 304 THR 305 LEU 306 LYS 307 ASP 308 ILE 309 MET 310 ALA 311 GLU 312

Unit 2

PHE 4 LYS 5 GLY 6 ASN 7 LYS 8 VAL 9 VAL 10 LEU 11 ILE 12 GLY 13 ASN 14 GLY 15 ALA 16 VAL 17 GLY 18 SER 19 SER 20 TYR 21 ALA 22 PHE 23 SER 24 LEU 25 VAL 26 ASN 27 GLN 28 SER 29 ILE 30 VAL 31 ASP 32 GLU 33 LEU 34 VAL 35 ILE 36 ILE 37 ASP 38 LEU 39 ASP 40 THR 41 GLU 42 LYS 43 VAL 44 ARG 45 GLY 46 ASP 47 VAL 48 MET 49 ASP 50 LEU 51 LYS 52 HIS 53 ALA 54 THR 55 PRO 56 TYR 57 SER 58 PRO 59 THR 60 THR 61 VAL 62 ARG 63 VAL 64 LYS 65 ALA 66 GLY 67 GLU 68 TYR 69 SER 70 ASP 71 CYS 72 HIS 73 ASP 74 ALA 75 ASP 76 LEU 77 VAL 78 VAL 79 ILE 80 CYS 81 ALA 82 GLY 83 ALA 84 ALA 85 GLN 86 LYS 87 PRO 88 GLY 89 GLU 90 THR 91 ARG 92 LEU 93 ASP 94 LEU 95 VAL 96 SER 97 LYS 98 ASN 99 LEU 100 LYS 101 ILE 102 PHE 103 LYS 104 SER 105 ILE 106 VAL 107 GLY 108 GLU 109 VAL 110 MET 111 ALA 112 SER 113 LYS 114 PHE 115 ASP 116 GLY 117 ILE 118 PHE 119 LEU 120 VAL 121 ALA 122 THR 123 ASN 124 PRO 125 VAL 126 ASP 127 ILE 128 LEU 129 ALA 130 TYR 131 ALA 132 THR 133 TRP 134 LYS 135 PHE 136 SER 137 GLY 138 LEU 139 PRO 140 LYS 141 GLU 142 ARG 143 VAL 144 ILE 145 GLY 146 SER 147 GLY 148 THR 149 ILE 150 LEU 151 ASP 152 SER 153 ALA 154 ARG 155 PHE 156 ARG 157 LEU 158 LEU 159 LEU 160 SER 161 GLU 162 ALA 163 PHE 164 ASP 165 VAL 166 ALA 167 PRO 168 ARG 169 SER 170 VAL 171 ASP 172 ALA 173 GLN 174 ILE 175 ILE 176 GLY 177 GLU 178 HIS 179 GLY 180 ASP 181 THR 182 GLU 183 LEU 184 PRO 185 VAL 186 TRP 187 SER 188 HIS 189 ALA 190 ASN 191 ILE 192 ALA 193 GLY 194 GLN 195 PRO 196 LEU 197 LYS 198 THR 199 LEU 200 LEU 201 GLU 202 GLN 203 ARG 204 PRO 205 GLU 206 GLY 207 LYS 208 ALA 209 GLN 210 ILE 211 GLU 212 GLN 213 ILE 214 PHE 215 VAL 216 GLN 217 THR 218 ARG 219 ASP 220 ALA 221 ALA 222 TYR 223 ASP 224 ILE 225 ILE 226 GLN 227 ALA 228 LYS 229 GLY 230 ALA 231 THR 232 TYR 233 TYR 234 GLY 235 VAL 236 ALA 237 MET 238 GLY 239 LEU 240 ALA 241 ARG 242 ILE 243 THR 244 GLU 245 ALA 246 ILE 247 PHE 248 ARG 249 ASN 250 GLU 251 ASP 252 ALA 253 VAL 254 LEU 255 THR 256 VAL 257 SER 258 ALA 259 LEU 260 LEU 261 GLU 262 GLY 263 GLU 264 TYR 265 GLU 266 GLU 267 GLU 268 ASP 269 VAL 270 TYR 271 ILE 272 GLY 273 VAL 274 PRO 275 ALA 276 VAL 277 ILE 278 ASN 279 ARG 280 ASN 281 GLY 282 ILE 283 ARG 284 ASN 285 VAL 286 VAL 287 GLU 288 ILE 289 PRO 290 LEU 291 ASN 292 ASP 293 GLU 294 GLU 295 GLN 296 SER 297 LYS 298 PHE 299 ALA 300 HIS 301 SER 302 ALA 303 LYS 304 THR 305 LEU 306 LYS 307 ASP 308 ILE 309 MET 310 ALA 311 GLU 312 ALA 313

Ligands

Unit 3	NAD 318 PYR 319
Unit 4	NAD 318 PYR 319