3D4O - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DIPICOLINATE SYNTHASE SUBUNIT A (NP_243 FROM BACILLUS HALODURANS AT 2.10 A RESOLUTION
• Keywords: NP_243269.1, DIPICOLINATE SYNTHASE SUBUNIT A, STRUCTURAL GEN JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTU INITIATIVE, PSI-2, ALANINE DEHYDROGENASE/PNT, C-TERMINAL DO COMPLEX, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3D4O	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DIPICOLINATE SYNTHASE SUBUNIT A	A	290	2098	88
2	Protein	DIPICOLINATE SYNTHASE SUBUNIT A	B	291	2083	88
3	Protein	DIPICOLINATE SYNTHASE SUBUNIT A	C	291	2054	88
4	Protein	DIPICOLINATE SYNTHASE SUBUNIT A	D	290	2058	88
5	Ligand	DIPICOLINATE SYNTHASE SUBUNIT A	A	3	0	18
6	Ligand	DIPICOLINATE SYNTHASE SUBUNIT A	B	4	0	16
7	Ligand	DIPICOLINATE SYNTHASE SUBUNIT A	C	3	0	12
8	Ligand	DIPICOLINATE SYNTHASE SUBUNIT A	D	4	0	16
9	Water			632	0	632
total				1808	8293	1046

Proteins

Unit 1	GLY 0 MSE 1 LEU 2 THR 3 GLY 4 LYS 5 HIS 6 VAL 7 VAL 8 ILE 9 ILE 10 GLY 11 GLY 12 ASP 13 ALA 14 ARG 15 GLN 16 LEU 17 GLU 18 ILE 19 ILE 20 ARG 21 LYS 22 LEU 23 SER 24 THR 25 PHE 26 ASP 27 ALA 28 LYS 29 ILE 30 SER 31 LEU 32 VAL 33 GLY 34 PHE 35 ASP 36 GLN 37 LEU 38 ASP 39 PHE 42 ILE 43 GLY 44 VAL 45 THR 46 LYS 47 MSE 48 ARG 49 ILE 50 ASP 51 GLU 52 VAL 53 ASP 54 TRP 55 ASN 56 THR 57 VAL 58 ASP 59 ALA 60 ILE 61 LEU 62 LEU 63 PRO 64 ILE 65 SER 66 GLY 67 THR 68 ASN 69 GLU 70 ALA 71 GLY 72 LYS 73 VAL 74 ASP 75 THR 76 ILE 77 PHE 78 SER 79 ASN 80 GLU 81 SER 82 ILE 83 VAL 84 LEU 85 THR 86 GLU 87 GLU 88 MSE 89 ILE 90 GLU 91 LYS 92 THR 93 PRO 94 ASN 95 HIS 96 CYS 97 VAL 98 VAL 99 TYR 100 SER 101 GLY 102 ILE 103 SER 104 ASN 105 THR 106 TYR 107 LEU 108 ASN 109 GLN 110 CYS 111 MSE 112 LYS 113 LYS 114 THR 115 ASN 116 ARG 117 THR 118 LEU 119 VAL 120 LYS 121 LEU 122 MSE 123 GLU 124 ARG 125 ASP 126 ASP 127 ILE 128 ALA 129 ILE 130 TYR 131 ASN 132 SER 133 ILE 134 PRO 135 THR 136 ALA 137 GLU 138 GLY 139 THR 140 ILE 141 MSE 142 MSE 143 ALA 144 ILE 145 GLN 146 HIS 147 THR 148 ASP 149 PHE 150 THR 151 ILE 152 HIS 153 GLY 154 ALA 155 ASN 156 VAL 157 ALA 158 VAL 159 LEU 160 GLY 161 LEU 162 GLY 163 ARG 164 VAL 165 GLY 166 MSE 167 SER 168 VAL 169 ALA 170 ARG 171 LYS 172 PHE 173 ALA 174 ALA 175 LEU 176 GLY 177 ALA 178 LYS 179 VAL 180 LYS 181 VAL 182 GLY 183 ALA 184 ARG 185 GLU 186 SER 187 ASP 188 LEU 189 LEU 190 ALA 191 ARG 192 ILE 193 ALA 194 GLU 195 MSE 196 GLY 197 MSE 198 GLU 199 PRO 200 PHE 201 HIS 202 ILE 203 SER 204 LYS 205 ALA 206 ALA 207 GLN 208 GLU 209 LEU 210 ARG 211 ASP 212 VAL 213 ASP 214 VAL 215 CYS 216 ILE 217 ASN 218 THR 219 ILE 220 PRO 221 ALA 222 LEU 223 VAL 224 VAL 225 THR 226 ALA 227 ASN 228 VAL 229 LEU 230 ALA 231 GLU 232 MSE 233 PRO 234 SER 235 HIS 236 THR 237 PHE 238 VAL 239 ILE 240 ASP 241 LEU 242 ALA 243 SER 244 LYS 245 PRO 246 GLY 247 GLY 248 THR 249 ASP 250 PHE 251 ARG 252 TYR 253 ALA 254 GLU 255 LYS 256 ARG 257 GLY 258 ILE 259 LYS 260 ALA 261 LEU 262 LEU 263 VAL 264 PRO 265 GLY 266 LEU 267 PRO 268 GLY 269 ILE 270 VAL 271 ALA 272 PRO 273 LYS 274 THR 275 ALA 276 GLY 277 ARG 278 ILE 279 LEU 280 ALA 281 ASP 282 VAL 283 LEU 284 VAL 285 LYS 286 LEU 287 LEU 288 ALA 289 GLU 290 PRO 291
Unit 2	GLY 0 MSE 1 LEU 2 THR 3 GLY 4 LYS 5 HIS 6 VAL 7 VAL 8 ILE 9 ILE 10 GLY 11 GLY 12 ASP 13 ALA 14 ARG 15 GLN 16 LEU 17 GLU 18 ILE 19 ILE 20 ARG 21 LYS 22 LEU 23 SER 24 THR 25 PHE 26 ASP 27 ALA 28 LYS 29 ILE 30 SER 31 LEU 32 VAL 33 GLY 34 PHE 35 ASP 36 GLN 37 LEU 38 ASP 39 GLY 41 PHE 42 ILE 43 GLY 44 VAL 45 THR 46 LYS 47 MSE 48 ARG 49 ILE 50 ASP 51 GLU 52 VAL 53 ASP 54 TRP 55 ASN 56 THR 57 VAL 58 ASP 59 ALA 60 ILE 61 LEU 62 LEU 63 PRO 64 ILE 65 SER 66 GLY 67 THR 68 ASN 69 GLU 70 ALA 71 GLY 72 LYS 73 VAL 74 ASP 75 THR 76 ILE 77 PHE 78 SER 79 ASN 80 GLU 81 SER 82 ILE 83 VAL 84 LEU 85 THR 86 GLU 87 GLU 88 MSE 89 ILE 90 GLU 91 LYS 92 THR 93 PRO 94 ASN 95 HIS 96 CYS 97 VAL 98 VAL 99 TYR 100 SER 101 GLY 102 ILE 103 SER 104 ASN 105 THR 106 TYR 107 LEU 108 ASN 109 GLN 110 CYS 111 MSE 112 LYS 113 LYS 114 THR 115 ASN 116 ARG 117 THR 118 LEU 119 VAL 120 LYS 121 LEU 122 MSE 123 GLU 124 ARG 125 ASP 126 ASP 127 ILE 128 ALA 129 ILE 130 TYR 131 ASN 132 SER 133 ILE 134 PRO 135 THR 136 ALA 137 GLU 138 GLY 139 THR 140 ILE 141 MSE 142 MSE 143 ALA 144 ILE 145 GLN 146 HIS 147 THR 148 ASP 149 PHE 150 THR 151 ILE 152 HIS 153 GLY 154 ALA 155 ASN 156 VAL 157 ALA 158 VAL 159 LEU 160 GLY 161 LEU 162 GLY 163 ARG 164 VAL 165 GLY 166 MSE 167 SER 168 VAL 169 ALA 170 ARG 171 LYS 172 PHE 173 ALA 174 ALA 175 LEU 176 GLY 177 ALA 178 LYS 179 VAL 180 LYS 181 VAL 182 GLY 183 ALA 184 ARG 185 GLU 186 SER 187 ASP 188 LEU 189 LEU 190 ALA 191 ARG 192 ILE 193 ALA 194 GLU 195 MSE 196 GLY 197 MSE 198 GLU 199 PRO 200 PHE 201 HIS 202 ILE 203 SER 204 LYS 205 ALA 206 ALA 207 GLN 208 GLU 209 LEU 210 ARG 211 ASP 212 VAL 213 ASP 214 VAL 215 CYS 216 ILE 217 ASN 218 THR 219 ILE 220 PRO 221 ALA 222 LEU 223 VAL 224 VAL 225 THR 226 ALA 227 ASN 228 VAL 229 LEU 230 ALA 231 GLU 232 MSE 233 PRO 234 SER 235 HIS 236 THR 237 PHE 238 VAL 239 ILE 240 ASP 241 LEU 242 ALA 243 SER 244 LYS 245 PRO 246 GLY 247 GLY 248 THR 249 ASP 250 PHE 251 ARG 252 TYR 253 ALA 254 GLU 255 LYS 256 ARG 257 GLY 258 ILE 259 LYS 260 ALA 261 LEU 262 LEU 263 VAL 264 PRO 265 GLY 266 LEU 267 PRO 268 GLY 269 ILE 270 VAL 271 ALA 272 PRO 273 LYS 274 THR 275 ALA 276 GLY 277 ARG 278 ILE 279 LEU 280 ALA 281 ASP 282 VAL 283 LEU 284 VAL 285 LYS 286 LEU 287 LEU 288 ALA 289 GLU 290 PRO 291
Unit 3	GLY 0 MSE 1 LEU 2 THR 3 GLY 4 LYS 5 HIS 6 VAL 7 VAL 8 ILE 9 ILE 10 GLY 11 GLY 12 ASP 13 ALA 14 ARG 15 GLN 16 LEU 17 GLU 18 ILE 19 ILE 20 ARG 21 LYS 22 LEU 23 SER 24 THR 25 PHE 26 ASP 27 ALA 28 LYS 29 ILE 30 SER 31 LEU 32 VAL 33 GLY 34 PHE 35 ASP 36 GLN 37 LEU 38 ASP 39 ASP 40 GLY 41 PHE 42 ILE 43 GLY 44 VAL 45 THR 46 LYS 47 MSE 48 ARG 49 ILE 50 ASP 51 GLU 52 VAL 53 ASP 54 TRP 55 ASN 56 THR 57 VAL 58 ASP 59 ALA 60 ILE 61 LEU 62 LEU 63 PRO 64 ILE 65 SER 66 GLY 67 THR 68 ASN 69 GLU 70 ALA 71 GLY 72 LYS 73 VAL 74 ASP 75 THR 76 ILE 77 PHE 78 SER 79 ASN 80 GLU 81 SER 82 ILE 83 VAL 84 LEU 85 THR 86 GLU 87 GLU 88 MSE 89 ILE 90 GLU 91 LYS 92 THR 93 PRO 94 ASN 95 HIS 96 CYS 97 VAL 98 VAL 99 TYR 100 SER 101 GLY 102 ILE 103 SER 104 ASN 105 THR 106 TYR 107 LEU 108 ASN 109 GLN 110 CYS 111 MSE 112 LYS 113 LYS 114 THR 115 ASN 116 ARG 117 THR 118 LEU 119 VAL 120 LYS 121 LEU 122 MSE 123 GLU 124 ARG 125 ASP 126 ASP 127 ILE 128 ALA 129 ILE 130 TYR 131 ASN 132 SER 133 ILE 134 PRO 135 THR 136 ALA 137 GLU 138 GLY 139 THR 140 ILE 141 MSE 142 MSE 143 ALA 144 ILE 145 GLN 146 HIS 147 THR 148 ASP 149 PHE 150 THR 151 ILE 152 HIS 153 GLY 154 ALA 155 ASN 156 VAL 157 ALA 158 VAL 159 LEU 160 GLY 161 LEU 162 GLY 163 ARG 164 VAL 165 GLY 166 MSE 167 SER 168 VAL 169 ALA 170 ARG 171 LYS 172 PHE 173 ALA 174 ALA 175 LEU 176 GLY 177 ALA 178 LYS 179 VAL 180 LYS 181 VAL 182 GLY 183 ALA 184 ARG 185 GLU 186 SER 187 ASP 188 LEU 189 LEU 190 ALA 191 ARG 192 ILE 193 ALA 194 GLU 195 MSE 196 GLY 197 MSE 198 GLU 199 PRO 200 PHE 201 HIS 202 ILE 203 SER 204 LYS 205 ALA 206 ALA 207 GLN 208 GLU 209 LEU 210 ARG 211 ASP 212 VAL 213 ASP 214 VAL 215 CYS 216 ILE 217 ASN 218 THR 219 ILE 220 PRO 221 ALA 222 LEU 223 VAL 224 VAL 225 THR 226 ALA 227 ASN 228 VAL 229 LEU 230 ALA 231 GLU 232 MSE 233 PRO 234 SER 235 HIS 236 THR 237 PHE 238 VAL 239 ILE 240 ASP 241 LEU 242 ALA 243 SER 244 LYS 245 PRO 246 GLY 247 GLY 248 THR 249 ASP 250 PHE 251 ARG 252 TYR 253 ALA 254 GLU 255 LYS 256 ARG 257 GLY 258 ILE 259 LYS 260 ALA 261 LEU 262 LEU 263 VAL 264 PRO 265 GLY 266 LEU 267 PRO 268 GLY 269 ILE 270 VAL 271 ALA 272 PRO 273 LYS 274 THR 275 ALA 276 GLY 277 ARG 278 ILE 279 LEU 280 ALA 281 ASP 282 VAL 283 LEU 284 VAL 285 LYS 286 LEU 287 LEU 288 ALA 289 GLU 290
Unit 4	GLY 0 MSE 1 LEU 2 THR 3 GLY 4 LYS 5 HIS 6 VAL 7 VAL 8 ILE 9 ILE 10 GLY 11 GLY 12 ASP 13 ALA 14 ARG 15 GLN 16 LEU 17 GLU 18 ILE 19 ILE 20 ARG 21 LYS 22 LEU 23 SER 24 THR 25 PHE 26 ASP 27 ALA 28 LYS 29 ILE 30 SER 31 LEU 32 VAL 33 GLY 34 PHE 35 ASP 36 GLN 37 LEU 38 ASP 39 GLY 41 PHE 42 ILE 43 GLY 44 VAL 45 THR 46 LYS 47 MSE 48 ARG 49 ILE 50 ASP 51 GLU 52 VAL 53 ASP 54 TRP 55 ASN 56 THR 57 VAL 58 ASP 59 ALA 60 ILE 61 LEU 62 LEU 63 PRO 64 ILE 65 SER 66 GLY 67 THR 68 ASN 69 GLU 70 ALA 71 GLY 72 LYS 73 VAL 74 ASP 75 THR 76 ILE 77 PHE 78 SER 79 ASN 80 GLU 81 SER 82 ILE 83 VAL 84 LEU 85 THR 86 GLU 87 GLU 88 MSE 89 ILE 90 GLU 91 LYS 92 THR 93 PRO 94 ASN 95 HIS 96 CYS 97 VAL 98 VAL 99 TYR 100 SER 101 GLY 102 ILE 103 SER 104 ASN 105 THR 106 TYR 107 LEU 108 ASN 109 GLN 110 CYS 111 MSE 112 LYS 113 LYS 114 THR 115 ASN 116 ARG 117 THR 118 LEU 119 VAL 120 LYS 121 LEU 122 MSE 123 GLU 124 ARG 125 ASP 126 ASP 127 ILE 128 ALA 129 ILE 130 TYR 131 ASN 132 SER 133 ILE 134 PRO 135 THR 136 ALA 137 GLU 138 GLY 139 THR 140 ILE 141 MSE 142 MSE 143 ALA 144 ILE 145 GLN 146 HIS 147 THR 148 ASP 149 PHE 150 THR 151 ILE 152 HIS 153 GLY 154 ALA 155 ASN 156 VAL 157 ALA 158 VAL 159 LEU 160 GLY 161 LEU 162 GLY 163 ARG 164 VAL 165 GLY 166 MSE 167 SER 168 VAL 169 ALA 170 ARG 171 LYS 172 PHE 173 ALA 174 ALA 175 LEU 176 GLY 177 ALA 178 LYS 179 VAL 180 LYS 181 VAL 182 GLY 183 ALA 184 ARG 185 GLU 186 SER 187 ASP 188 LEU 189 LEU 190 ALA 191 ARG 192 ILE 193 ALA 194 GLU 195 MSE 196 GLY 197 MSE 198 GLU 199 PRO 200 PHE 201 HIS 202 ILE 203 SER 204 LYS 205 ALA 206 ALA 207 GLN 208 GLU 209 LEU 210 ARG 211 ASP 212 VAL 213 ASP 214 VAL 215 CYS 216 ILE 217 ASN 218 THR 219 ILE 220 PRO 221 ALA 222 LEU 223 VAL 224 VAL 225 THR 226 ALA 227 ASN 228 VAL 229 LEU 230 ALA 231 GLU 232 MSE 233 PRO 234 SER 235 HIS 236 THR 237 PHE 238 VAL 239 ILE 240 ASP 241 LEU 242 ALA 243 SER 244 LYS 245 PRO 246 GLY 247 GLY 248 THR 249 ASP 250 PHE 251 ARG 252 TYR 253 ALA 254 GLU 255 LYS 256 ARG 257 GLY 258 ILE 259 LYS 260 ALA 261 LEU 262 LEU 263 VAL 264 PRO 265 GLY 266 LEU 267 PRO 268 GLY 269 ILE 270 VAL 271 ALA 272 PRO 273 LYS 274 THR 275 ALA 276 GLY 277 ARG 278 ILE 279 LEU 280 ALA 281 ASP 282 VAL 283 LEU 284 VAL 285 LYS 286 LEU 287 LEU 288 ALA 289 GLU 290

Ligands

Unit 5	EDO 293 EDO 294 TAR 295
Unit 6	EDO 293 EDO 294 EDO 295 EDO 296
Unit 7	EDO 293 EDO 294 EDO 295
Unit 8	EDO 293 EDO 294 EDO 295 EDO 296