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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN DIPEPTIDYL PEPTIDASE IV/CD26 IN COMPLEX WITH A NOVEL I
Keywords ALPHA/BETA, BETA-PROPELLER, DIMER, AMINOPEPTIDASE, GLYCOPROT HYDROLASE, MEMBRANE, PROTEASE, SECRETED, SERINE PROTEASE, S ANCHOR, TRANSMEMBRANE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3D4L     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM  A 728 5965 0
2  Protein   DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM  B 728 5965 0
3  Ligand    C 2 0 28
4  Ligand    D 2 0 28
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand    K 2 0 28
12  Ligand   DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM  A 5 0 69
13  Ligand   DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM  B 4 0 68
14 Water     982 0 982
total       2465 11930 1371
Proteins
Unit 1 THR39 ARG40 LYS41 THR42 TYR43 THR44 LEU45 THR46 ASP47 TYR48 LEU49 LYS50 ASN51 THR52 TYR53 ARG54 LEU55 LYS56 LEU57 TYR58 SER59 LEU60 ARG61 TRP62 ILE63 SER64 ASP65 HIS66 GLU67 TYR68 LEU69 TYR70 LYS71 GLN72 GLU73 ASN74 ASN75 ILE76 LEU77 VAL78 PHE79 ASN80 ALA81 GLU82 TYR83 GLY84 ASN85 SER86 SER87 VAL88 PHE89 LEU90 GLU91 ASN92 SER93 THR94 PHE95 ASP96 GLU97 PHE98 GLY99 HIS100 SER101 ILE102 ASN103 ASP104 TYR105 SER106 ILE107 SER108 PRO109 ASP110 GLY111 GLN112 PHE113 ILE114 LEU115 LEU116 GLU117 TYR118 ASN119 TYR120 VAL121 LYS122 GLN123 TRP124 ARG125 HIS126 SER127 TYR128 THR129 ALA130 SER131 TYR132 ASP133 ILE134 TYR135 ASP136 LEU137 ASN138 LYS139 ARG140 GLN141 LEU142 ILE143 THR144 GLU145 GLU146 ARG147 ILE148 PRO149 ASN150 ASN151 THR152 GLN153 TRP154 VAL155 THR156 TRP157 SER158 PRO159 VAL160 GLY161 HIS162 LYS163 LEU164 ALA165 TYR166 VAL167 TRP168 ASN169 ASN170 ASP171 ILE172 TYR173 VAL174 LYS175 ILE176 GLU177 PRO178 ASN179 LEU180 PRO181 SER182 TYR183 ARG184 ILE185 THR186 TRP187 THR188 GLY189 LYS190 GLU191 ASP192 ILE193 ILE194 TYR195 ASN196 GLY197 ILE198 THR199 ASP200 TRP201 VAL202 TYR203 GLU204 GLU205 GLU206 VAL207 PHE208 SER209 ALA210 TYR211 SER212 ALA213 LEU214 TRP215 TRP216 SER217 PRO218 ASN219 GLY220 THR221 PHE222 LEU223 ALA224 TYR225 ALA226 GLN227 PHE228 ASN229 ASP230 THR231 GLU232 VAL233 PRO234 LEU235 ILE236 GLU237 TYR238 SER239 PHE240 TYR241 SER242 ASP243 GLU244 SER245 LEU246 GLN247 TYR248 PRO249 LYS250 THR251 VAL252 ARG253 VAL254 PRO255 TYR256 PRO257 LYS258 ALA259 GLY260 ALA261 VAL262 ASN263 PRO264 THR265 VAL266 LYS267 PHE268 PHE269 VAL270 VAL271 ASN272 THR273 ASP274 SER275 LEU276 SER277 SER278 VAL279 THR280 ASN281 ALA282 THR283 SER284 ILE285 GLN286 ILE287 THR288 ALA289 PRO290 ALA291 SER292 MET293 LEU294 ILE295 GLY296 ASP297 HIS298 TYR299 LEU300 CYS301 ASP302 VAL303 THR304 TRP305 ALA306 THR307 GLN308 GLU309 ARG310 ILE311 SER312 LEU313 GLN314 TRP315 LEU316 ARG317 ARG318 ILE319 GLN320 ASN321 TYR322 SER323 VAL324 MET325 ASP326 ILE327 CYS328 ASP329 TYR330 ASP331 GLU332 SER333 SER334 GLY335 ARG336 TRP337 ASN338 CYS339 LEU340 VAL341 ALA342 ARG343 GLN344 HIS345 ILE346 GLU347 MET348 SER349 THR350 THR351 GLY352 TRP353 VAL354 GLY355 ARG356 PHE357 ARG358 PRO359 SER360 GLU361 PRO362 HIS363 PHE364 THR365 LEU366 ASP367 GLY368 ASN369 SER370 PHE371 TYR372 LYS373 ILE374 ILE375 SER376 ASN377 GLU378 GLU379 GLY380 TYR381 ARG382 HIS383 ILE384 CYS385 TYR386 PHE387 GLN388 ILE389 ASP390 LYS391 LYS392 ASP393 CYS394 THR395 PHE396 ILE397 THR398 LYS399 GLY400 THR401 TRP402 GLU403 VAL404 ILE405 GLY406 ILE407 GLU408 ALA409 LEU410 THR411 SER412 ASP413 TYR414 LEU415 TYR416 TYR417 ILE418 SER419 ASN420 GLU421 TYR422 LYS423 GLY424 MET425 PRO426 GLY427 GLY428 ARG429 ASN430 LEU431 TYR432 LYS433 ILE434 GLN435 LEU436 SER437 ASP438 TYR439 THR440 LYS441 VAL442 THR443 CYS444 LEU445 SER446 CYS447 GLU448 LEU449 ASN450 PRO451 GLU452 ARG453 CYS454 GLN455 TYR456 TYR457 SER458 VAL459 SER460 PHE461 SER462 LYS463 GLU464 ALA465 LYS466 TYR467 TYR468 GLN469 LEU470 ARG471 CYS472 SER473 GLY474 PRO475 GLY476 LEU477 PRO478 LEU479 TYR480 THR481 LEU482 HIS483 SER484 SER485 VAL486 ASN487 ASP488 LYS489 GLY490 LEU491 ARG492 VAL493 LEU494 GLU495 ASP496 ASN497 SER498 ALA499 LEU500 ASP501 LYS502 MET503 LEU504 GLN505 ASN506 VAL507 GLN508 MET509 PRO510 SER511 LYS512 LYS513 LEU514 ASP515 PHE516 ILE517 ILE518 LEU519 ASN520 GLU521 THR522 LYS523 PHE524 TRP525 TYR526 GLN527 MET528 ILE529 LEU530 PRO531 PRO532 HIS533 PHE534 ASP535 LYS536 SER537 LYS538 LYS539 TYR540 PRO541 LEU542 LEU543 LEU544 ASP545 VAL546 TYR547 ALA548 GLY549 PRO550 CYS551 SER552 GLN553 LYS554 ALA555 ASP556 THR557 VAL558 PHE559 ARG560 LEU561 ASN562 TRP563 ALA564 THR565 TYR566 LEU567 ALA568 SER569 THR570 GLU571 ASN572 ILE573 ILE574 VAL575 ALA576 SER577 PHE578 ASP579 GLY580 ARG581 GLY582 SER583 GLY584 TYR585 GLN586 GLY587 ASP588 LYS589 ILE590 MET591 HIS592 ALA593 ILE594 ASN595 ARG596 ARG597 LEU598 GLY599 THR600 PHE601 GLU602 VAL603 GLU604 ASP605 GLN606 ILE607 GLU608 ALA609 ALA610 ARG611 GLN612 PHE613 SER614 LYS615 MET616 GLY617 PHE618 VAL619 ASP620 ASN621 LYS622 ARG623 ILE624 ALA625 ILE626 TRP627 GLY628 TRP629 SER630 TYR631 GLY632 GLY633 TYR634 VAL635 THR636 SER637 MET638 VAL639 LEU640 GLY641 SER642 GLY643 SER644 GLY645 VAL646 PHE647 LYS648 CYS649 GLY650 ILE651 ALA652 VAL653 ALA654 PRO655 VAL656 SER657 ARG658 TRP659 GLU660 TYR661 TYR662 ASP663 SER664 VAL665 TYR666 THR667 GLU668 ARG669 TYR670 MET671 GLY672 LEU673 PRO674 THR675 PRO676 GLU677 ASP678 ASN679 LEU680 ASP681 HIS682 TYR683 ARG684 ASN685 SER686 THR687 VAL688 MET689 SER690 ARG691 ALA692 GLU693 ASN694 PHE695 LYS696 GLN697 VAL698 GLU699 TYR700 LEU701 LEU702 ILE703 HIS704 GLY705 THR706 ALA707 ASP708 ASP709 ASN710 VAL711 HIS712 PHE713 GLN714 GLN715 SER716 ALA717 GLN718 ILE719 SER720 LYS721 ALA722 LEU723 VAL724 ASP725 VAL726 GLY727 VAL728 ASP729 PHE730 GLN731 ALA732 MET733 TRP734 TYR735 THR736 ASP737 GLU738 ASP739 HIS740 GLY741 ILE742 ALA743 SER744 SER745 THR746 ALA747 HIS748 GLN749 HIS750 ILE751 TYR752 THR753 HIS754 MET755 SER756 HIS757 PHE758 ILE759 LYS760 GLN761 CYS762 PHE763 SER764 LEU765 PRO766
Unit 2 THR39 ARG40 LYS41 THR42 TYR43 THR44 LEU45 THR46 ASP47 TYR48 LEU49 LYS50 ASN51 THR52 TYR53 ARG54 LEU55 LYS56 LEU57 TYR58 SER59 LEU60 ARG61 TRP62 ILE63 SER64 ASP65 HIS66 GLU67 TYR68 LEU69 TYR70 LYS71 GLN72 GLU73 ASN74 ASN75 ILE76 LEU77 VAL78 PHE79 ASN80 ALA81 GLU82 TYR83 GLY84 ASN85 SER86 SER87 VAL88 PHE89 LEU90 GLU91 ASN92 SER93 THR94 PHE95 ASP96 GLU97 PHE98 GLY99 HIS100 SER101 ILE102 ASN103 ASP104 TYR105 SER106 ILE107 SER108 PRO109 ASP110 GLY111 GLN112 PHE113 ILE114 LEU115 LEU116 GLU117 TYR118 ASN119 TYR120 VAL121 LYS122 GLN123 TRP124 ARG125 HIS126 SER127 TYR128 THR129 ALA130 SER131 TYR132 ASP133 ILE134 TYR135 ASP136 LEU137 ASN138 LYS139 ARG140 GLN141 LEU142 ILE143 THR144 GLU145 GLU146 ARG147 ILE148 PRO149 ASN150 ASN151 THR152 GLN153 TRP154 VAL155 THR156 TRP157 SER158 PRO159 VAL160 GLY161 HIS162 LYS163 LEU164 ALA165 TYR166 VAL167 TRP168 ASN169 ASN170 ASP171 ILE172 TYR173 VAL174 LYS175 ILE176 GLU177 PRO178 ASN179 LEU180 PRO181 SER182 TYR183 ARG184 ILE185 THR186 TRP187 THR188 GLY189 LYS190 GLU191 ASP192 ILE193 ILE194 TYR195 ASN196 GLY197 ILE198 THR199 ASP200 TRP201 VAL202 TYR203 GLU204 GLU205 GLU206 VAL207 PHE208 SER209 ALA210 TYR211 SER212 ALA213 LEU214 TRP215 TRP216 SER217 PRO218 ASN219 GLY220 THR221 PHE222 LEU223 ALA224 TYR225 ALA226 GLN227 PHE228 ASN229 ASP230 THR231 GLU232 VAL233 PRO234 LEU235 ILE236 GLU237 TYR238 SER239 PHE240 TYR241 SER242 ASP243 GLU244 SER245 LEU246 GLN247 TYR248 PRO249 LYS250 THR251 VAL252 ARG253 VAL254 PRO255 TYR256 PRO257 LYS258 ALA259 GLY260 ALA261 VAL262 ASN263 PRO264 THR265 VAL266 LYS267 PHE268 PHE269 VAL270 VAL271 ASN272 THR273 ASP274 SER275 LEU276 SER277 SER278 VAL279 THR280 ASN281 ALA282 THR283 SER284 ILE285 GLN286 ILE287 THR288 ALA289 PRO290 ALA291 SER292 MET293 LEU294 ILE295 GLY296 ASP297 HIS298 TYR299 LEU300 CYS301 ASP302 VAL303 THR304 TRP305 ALA306 THR307 GLN308 GLU309 ARG310 ILE311 SER312 LEU313 GLN314 TRP315 LEU316 ARG317 ARG318 ILE319 GLN320 ASN321 TYR322 SER323 VAL324 MET325 ASP326 ILE327 CYS328 ASP329 TYR330 ASP331 GLU332 SER333 SER334 GLY335 ARG336 TRP337 ASN338 CYS339 LEU340 VAL341 ALA342 ARG343 GLN344 HIS345 ILE346 GLU347 MET348 SER349 THR350 THR351 GLY352 TRP353 VAL354 GLY355 ARG356 PHE357 ARG358 PRO359 SER360 GLU361 PRO362 HIS363 PHE364 THR365 LEU366 ASP367 GLY368 ASN369 SER370 PHE371 TYR372 LYS373 ILE374 ILE375 SER376 ASN377 GLU378 GLU379 GLY380 TYR381 ARG382 HIS383 ILE384 CYS385 TYR386 PHE387 GLN388 ILE389 ASP390 LYS391 LYS392 ASP393 CYS394 THR395 PHE396 ILE397 THR398 LYS399 GLY400 THR401 TRP402 GLU403 VAL404 ILE405 GLY406 ILE407 GLU408 ALA409 LEU410 THR411 SER412 ASP413 TYR414 LEU415 TYR416 TYR417 ILE418 SER419 ASN420 GLU421 TYR422 LYS423 GLY424 MET425 PRO426 GLY427 GLY428 ARG429 ASN430 LEU431 TYR432 LYS433 ILE434 GLN435 LEU436 SER437 ASP438 TYR439 THR440 LYS441 VAL442 THR443 CYS444 LEU445 SER446 CYS447 GLU448 LEU449 ASN450 PRO451 GLU452 ARG453 CYS454 GLN455 TYR456 TYR457 SER458 VAL459 SER460 PHE461 SER462 LYS463 GLU464 ALA465 LYS466 TYR467 TYR468 GLN469 LEU470 ARG471 CYS472 SER473 GLY474 PRO475 GLY476 LEU477 PRO478 LEU479 TYR480 THR481 LEU482 HIS483 SER484 SER485 VAL486 ASN487 ASP488 LYS489 GLY490 LEU491 ARG492 VAL493 LEU494 GLU495 ASP496 ASN497 SER498 ALA499 LEU500 ASP501 LYS502 MET503 LEU504 GLN505 ASN506 VAL507 GLN508 MET509 PRO510 SER511 LYS512 LYS513 LEU514 ASP515 PHE516 ILE517 ILE518 LEU519 ASN520 GLU521 THR522 LYS523 PHE524 TRP525 TYR526 GLN527 MET528 ILE529 LEU530 PRO531 PRO532 HIS533 PHE534 ASP535 LYS536 SER537 LYS538 LYS539 TYR540 PRO541 LEU542 LEU543 LEU544 ASP545 VAL546 TYR547 ALA548 GLY549 PRO550 CYS551 SER552 GLN553 LYS554 ALA555 ASP556 THR557 VAL558 PHE559 ARG560 LEU561 ASN562 TRP563 ALA564 THR565 TYR566 LEU567 ALA568 SER569 THR570 GLU571 ASN572 ILE573 ILE574 VAL575 ALA576 SER577 PHE578 ASP579 GLY580 ARG581 GLY582 SER583 GLY584 TYR585 GLN586 GLY587 ASP588 LYS589 ILE590 MET591 HIS592 ALA593 ILE594 ASN595 ARG596 ARG597 LEU598 GLY599 THR600 PHE601 GLU602 VAL603 GLU604 ASP605 GLN606 ILE607 GLU608 ALA609 ALA610 ARG611 GLN612 PHE613 SER614 LYS615 MET616 GLY617 PHE618 VAL619 ASP620 ASN621 LYS622 ARG623 ILE624 ALA625 ILE626 TRP627 GLY628 TRP629 SER630 TYR631 GLY632 GLY633 TYR634 VAL635 THR636 SER637 MET638 VAL639 LEU640 GLY641 SER642 GLY643 SER644 GLY645 VAL646 PHE647 LYS648 CYS649 GLY650 ILE651 ALA652 VAL653 ALA654 PRO655 VAL656 SER657 ARG658 TRP659 GLU660 TYR661 TYR662 ASP663 SER664 VAL665 TYR666 THR667 GLU668 ARG669 TYR670 MET671 GLY672 LEU673 PRO674 THR675 PRO676 GLU677 ASP678 ASN679 LEU680 ASP681 HIS682 TYR683 ARG684 ASN685 SER686 THR687 VAL688 MET689 SER690 ARG691 ALA692 GLU693 ASN694 PHE695 LYS696 GLN697 VAL698 GLU699 TYR700 LEU701 LEU702 ILE703 HIS704 GLY705 THR706 ALA707 ASP708 ASP709 ASN710 VAL711 HIS712 PHE713 GLN714 GLN715 SER716 ALA717 GLN718 ILE719 SER720 LYS721 ALA722 LEU723 VAL724 ASP725 VAL726 GLY727 VAL728 ASP729 PHE730 GLN731 ALA732 MET733 TRP734 TYR735 THR736 ASP737 GLU738 ASP739 HIS740 GLY741 ILE742 ALA743 SER744 SER745 THR746 ALA747 HIS748 GLN749 HIS750 ILE751 TYR752 THR753 HIS754 MET755 SER756 HIS757 PHE758 ILE759 LYS760 GLN761 CYS762 PHE763 SER764 LEU765 PRO766
Ligands
Unit 3 NAG1 NDG2
Unit 4 NAG1 NAG2
Unit 5 NAG1 NAG2
Unit 6 NAG1 NDG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NA1 NAG1092 NAG1281 NAG1520 6051521
Unit 13 6051521 NAG2092 NAG2150 NAG2321
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany