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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MOUSE PARN IN COMPLEX WITH M7GPPPG
Keywords PARN, CAP ANALOGUE, EXONUCLEASE, HYDROLASE, MAGNESIUM, METAL NONSENSE-MEDIATED MRNA DECAY, NUCLEASE, NUCLEUS, PHOSPHOPRO RNA-BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3D45     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POLY(A)-SPECIFIC RIBONUCLEASE PARN  A 383 3109 0
2  Protein   POLY(A)-SPECIFIC RIBONUCLEASE PARN  B 373 3016 0
3  Ligand   POLY(A)-SPECIFIC RIBONUCLEASE PARN  A 2 0 52
4  Ligand   POLY(A)-SPECIFIC RIBONUCLEASE PARN  B 2 0 52
5 Water     78 0 78
total       838 6125 182
Proteins
Unit 1 MET1 GLU2 ILE3 ILE4 ARG5 SER6 ASN7 PHE8 LYS9 ILE10 ASN11 LEU12 HIS13 LYS14 VAL15 TYR16 GLN17 ALA18 ILE19 GLU20 GLU21 ALA22 ASP23 PHE24 PHE25 ALA26 ILE27 ASP28 GLY29 GLU30 PHE31 SER32 GLY33 ILE34 SER35 ASP36 SER45 GLY46 PHE47 ASP48 THR49 PRO50 GLU51 GLU52 ARG53 TYR54 GLN55 LYS56 LEU57 LYS58 LYS59 HIS60 SER61 MET62 ASP63 PHE64 LEU65 LEU66 PHE67 GLN68 PHE69 GLY70 LEU71 CYS72 ALA73 PHE74 LYS75 TYR76 ASP77 HIS78 THR79 ASP80 SER81 LYS82 HIS83 VAL84 THR85 LYS86 SER87 PHE88 ASN89 PHE90 TYR91 VAL92 PHE93 PRO94 LYS95 PRO96 PHE97 SER98 ARG99 SER100 SER101 PRO102 ASP103 VAL104 LYS105 PHE106 VAL107 CYS108 GLN109 SER110 SER111 SER112 ILE113 ASP114 PHE115 LEU116 ALA117 SER118 GLN119 GLY120 PHE121 ASP122 PHE123 ASN124 LYS125 VAL126 PHE127 CYS128 SER129 GLY130 ILE131 PRO132 TYR133 LEU134 ASN135 GLN136 GLU137 GLU138 GLU139 ARG140 GLN141 LEU142 ARG143 GLU144 GLN145 PHE146 ASP147 GLU148 TYR250 THR251 LYS252 GLU253 GLN254 GLU255 GLU256 LEU257 ASN258 ASP259 ALA260 VAL261 GLY262 PHE263 SER264 ARG265 VAL266 ILE267 HIS268 ALA269 ILE270 ALA271 ASN272 SER273 GLY274 LYS275 LEU276 VAL277 VAL278 GLY279 HIS280 ASN281 MET282 LEU283 LEU284 ASP285 VAL286 MET287 HIS288 THR289 ILE290 HIS291 GLN292 PHE293 TYR294 CYS295 PRO296 LEU297 PRO298 ALA299 ASP300 LEU301 ASN302 GLU303 PHE304 LYS305 GLU306 MET307 ALA308 ILE309 CYS310 VAL311 PHE312 PRO313 ARG314 LEU315 LEU316 ASP317 THR318 LYS319 LEU320 MET321 ALA322 SER323 THR324 GLN325 PRO326 PHE327 LYS328 ASP329 ILE330 ILE331 ASN332 ASN333 THR334 SER335 LEU336 ALA337 GLU338 LEU339 GLU340 LYS341 ARG342 LEU343 LYS344 GLU345 THR346 PRO347 PHE348 ASP349 PRO350 PRO351 LYS352 VAL353 GLU354 SER355 ALA356 GLU357 GLY358 PHE359 PRO360 SER361 TYR362 ASP363 GLN368 LEU369 HIS370 GLU371 ALA372 GLY373 TYR374 ASP375 ALA376 TYR377 ILE378 THR379 GLY380 LEU381 CYS382 PHE383 ILE384 SER385 MET386 ALA387 ASN388 TYR389 LEU390 GLY391 SER392 SER402 ALA403 ARG404 SER405 LYS406 LEU407 ILE408 GLU409 PRO410 PHE411 PHE412 ASN413 LYS414 LEU415 PHE416 LEU417 MET418 ARG419 VAL420 MET421 ASP422 ILE423 PRO424 TYR425 LEU426 ASN427 LEU428 GLU429 GLY430 PRO431 ASP432 LEU433 GLN434 PRO435 LYS436 ARG437 ASP438 HIS439 VAL440 LEU441 HIS442 VAL443 THR444 PHE445 PRO446 LYS447 GLU448 TRP449 LYS450 THR451 SER452 ASP453 LEU454 TYR455 GLN456 LEU457 PHE458 SER459 ALA460 PHE461 GLY462 ASN463 ILE464 GLN465 ILE466 SER467 TRP468 ILE469 ASP470 ASP471 THR472 SER473 ALA474 PHE475 VAL476 SER477 LEU478 SER479 GLN480 PRO481 GLU482 GLN483 VAL484 GLN485 ILE486 ALA487 VAL488 ASN489 THR490 SER491 LYS492 TYR493 ALA494 GLU495 SER496 TYR497 ARG498 ILE499 GLN500 THR501 TYR502 ALA503 PRO900 GLY901
Unit 2 MET1 GLU2 ILE3 ILE4 ARG5 SER6 ASN7 PHE8 LYS9 ILE10 ASN11 LEU12 HIS13 LYS14 VAL15 TYR16 GLN17 ALA18 ILE19 GLU20 GLU21 ALA22 ASP23 PHE24 PHE25 ALA26 ILE27 ASP28 GLY29 GLU30 PHE31 SER32 GLY33 ILE34 SER35 ASP36 GLY37 PRO38 SER39 VAL40 THR41 ALA42 LEU43 THR44 SER45 GLY46 PHE47 ASP48 THR49 PRO50 GLU51 GLU52 ARG53 TYR54 GLN55 LYS56 LEU57 LYS58 LYS59 HIS60 SER61 MET62 ASP63 PHE64 LEU65 LEU66 PHE67 GLN68 PHE69 GLY70 LEU71 CYS72 ALA73 PHE74 LYS75 TYR76 ASP77 HIS78 THR79 ASP80 SER81 LYS82 HIS83 VAL84 THR85 LYS86 SER87 PHE88 ASN89 PHE90 TYR91 VAL92 PHE93 PRO94 LYS95 PRO96 PHE97 SER98 ARG99 SER100 SER101 PRO102 ASP103 VAL104 LYS105 PHE106 VAL107 CYS108 GLN109 SER110 SER111 SER112 ILE113 ASP114 PHE115 LEU116 ALA117 SER118 GLN119 GLY120 PHE121 ASP122 PHE123 ASN124 LYS125 VAL126 PHE127 CYS128 SER129 GLY130 ILE131 PRO132 TYR133 LEU134 ASN135 GLN136 GLU137 GLU138 GLU139 ARG140 GLN141 LEU142 ARG143 GLU144 THR251 LYS252 GLU253 GLN254 GLU255 GLU256 LEU257 ASN258 ASP259 ALA260 VAL261 GLY262 PHE263 SER264 ARG265 VAL266 ILE267 HIS268 ALA269 ILE270 ALA271 ASN272 SER273 GLY274 LYS275 LEU276 VAL277 VAL278 GLY279 HIS280 ASN281 MET282 LEU283 LEU284 ASP285 VAL286 MET287 HIS288 THR289 ILE290 HIS291 GLN292 PHE293 TYR294 CYS295 PRO296 LEU297 PRO298 ALA299 ASP300 LEU301 ASN302 GLU303 PHE304 LYS305 GLU306 MET307 ALA308 ILE309 CYS310 VAL311 PHE312 PRO313 ARG314 LEU315 LEU316 ASP317 THR318 LYS319 LEU320 MET321 ALA322 SER323 THR324 GLN325 PRO326 PHE327 LYS328 ASP329 ILE330 ILE331 ASN332 ASN333 THR334 SER335 LEU336 ALA337 GLU338 LEU339 GLU340 LYS341 ARG342 LEU343 LYS344 GLU345 THR346 PRO347 PHE348 ASP349 PRO350 PRO351 LYS352 VAL353 GLU354 SER355 ALA356 GLU357 HIS370 GLU371 ALA372 GLY373 TYR374 ASP375 ALA376 TYR377 ILE378 THR379 GLY380 LEU381 CYS382 PHE383 ILE384 SER385 MET386 ALA387 ASN388 TYR389 LEU390 GLY391 SER405 LYS406 LEU407 ILE408 GLU409 PRO410 PHE411 PHE412 ASN413 LYS414 LEU415 PHE416 LEU417 MET418 ARG419 ILE423 PRO424 TYR425 LEU426 ASN427 LEU428 GLU429 GLY430 PRO431 ASP432 LEU433 GLN434 PRO435 LYS436 ARG437 ASP438 HIS439 VAL440 LEU441 HIS442 VAL443 THR444 PHE445 PRO446 LYS447 GLU448 TRP449 LYS450 THR451 SER452 ASP453 LEU454 TYR455 GLN456 LEU457 PHE458 SER459 ALA460 PHE461 GLY462 ASN463 ILE464 GLN465 ILE466 SER467 TRP468 ILE469 ASP470 ASP471 THR472 SER473 ALA474 PHE475 VAL476 SER477 LEU478 SER479 GLN480 PRO481 GLU482 GLN483 VAL484 GLN485 ILE486 ALA487 VAL488 ASN489 THR490 SER491 LYS492 TYR493 ALA494 GLU495 SER496 TYR497 ARG498 ILE499 GLN500 THR501 TYR502 ALA503 GLU504 TYR505 PRO900 GLY901
Ligands
Unit 3 7MG651 GDP652
Unit 4 GDP1151 7MG1152
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany