|
[Image Library Home] | [Image Library Entry] |
| Title | CRYSTAL STRUCTURAL OF ESCHERICHIA COLI K12 YGJK, A GLUCOSIDA BELONGING TO GLYCOSIDE HYDROLASE FAMILY 63 | |
| Keywords | GH63, PROCESSING ALPHA-GLUCOSIDASE, ALPHA/ALPHA BARREL, HYDR | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 3D3I | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | UNCHARACTERIZED PROTEIN YGJK | A | 758 | 5933 | 120 |
| 2 | Protein | UNCHARACTERIZED PROTEIN YGJK | B | 758 | 5933 | 120 |
| 3 | Ligand | UNCHARACTERIZED PROTEIN YGJK | A | 3 | 0 | 13 |
| 4 | Ligand | UNCHARACTERIZED PROTEIN YGJK | B | 3 | 0 | 13 |
| 5 | Water | 2004 | 0 | 2004 | ||
| total | 3526 | 11866 | 2270 |
| Unit 1 | ALA2 ASP3 ASN4 TYR5 LYS6 ASN7 VAL8 ILE9 ASN10 ARG11 THR12 GLY13 ALA14 PRO15 GLN16 TYR17 MSE18 LYS19 ASP20 TYR21 ASP22 TYR23 ASP24 ASP25 HIS26 GLN27 ARG28 PHE29 ASN30 PRO31 PHE32 PHE33 ASP34 LEU35 GLY36 ALA37 TRP38 HIS39 GLY40 HIS41 LEU42 LEU43 PRO44 ASP45 GLY46 PRO47 ASN48 THR49 MSE50 GLY51 GLY52 PHE53 PRO54 GLY55 VAL56 ALA57 LEU58 LEU59 THR60 GLU61 GLU62 TYR63 ILE64 ASN65 PHE66 MSE67 ALA68 SER69 ASN70 PHE71 ASP72 ARG73 LEU74 THR75 VAL76 TRP77 GLN78 ASP79 GLY80 LYS81 LYS82 VAL83 ASP84 PHE85 THR86 LEU87 GLU88 ALA89 TYR90 SER91 ILE92 PRO93 GLY94 ALA95 LEU96 VAL97 GLN98 LYS99 LEU100 THR101 ALA102 LYS103 ASP104 VAL105 GLN106 VAL107 GLU108 MSE109 THR110 LEU111 ARG112 PHE113 ALA114 THR115 PRO116 ARG117 THR118 SER119 LEU120 LEU121 GLU122 THR123 LYS124 ILE125 THR126 SER127 ASN128 LYS129 PRO130 LEU131 ASP132 LEU133 VAL134 TRP135 ASP136 GLY137 GLU138 LEU139 LEU140 GLU141 LYS142 LEU143 GLU144 ALA145 LYS146 GLU147 GLY148 LYS149 PRO150 LEU151 SER152 ASP153 LYS154 THR155 ILE156 ALA157 GLY158 GLU159 TYR160 PRO161 ASP162 TYR163 GLN164 ARG165 LYS166 ILE167 SER168 ALA169 THR170 ARG171 ASP172 GLY173 LEU174 LYS175 VAL176 THR177 PHE178 GLY179 LYS180 VAL181 ARG182 ALA183 THR184 TRP185 ASP186 LEU187 LEU188 THR189 SER190 GLY191 GLU192 SER193 GLU194 TYR195 GLN196 VAL197 HIS198 LYS199 SER200 LEU201 PRO202 VAL203 GLN204 THR205 GLU206 ILE207 ASN208 GLY209 ASN210 ARG211 PHE212 THR213 SER214 LYS215 ALA216 HIS217 ILE218 ASN219 GLY220 SER221 THR222 THR223 LEU224 TYR225 THR226 THR227 TYR228 SER229 HIS230 LEU231 LEU232 THR233 ALA234 GLN235 GLU236 VAL237 SER238 LYS239 GLU240 GLN241 MSE242 GLN243 ILE244 ARG245 ASP246 ILE247 LEU248 ALA249 ARG250 PRO251 ALA252 PHE253 TYR254 LEU255 THR256 ALA257 SER258 GLN259 GLN260 ARG261 TRP262 GLU263 GLU264 TYR265 LEU266 LYS267 LYS268 GLY269 LEU270 THR271 ASN272 PRO273 ASP274 ALA275 THR276 PRO277 GLU278 GLN279 THR280 ARG281 VAL282 ALA283 VAL284 LYS285 ALA286 ILE287 GLU288 THR289 LEU290 ASN291 GLY292 ASN293 TRP294 ARG295 SER296 PRO297 GLY298 GLY299 ALA300 VAL301 LYS302 PHE303 ASN304 THR305 VAL306 THR307 PRO308 SER309 VAL310 THR311 GLY312 ARG313 TRP314 PHE315 SER316 GLY317 ASN318 GLN319 THR320 TRP321 PRO322 TRP323 ASP324 THR325 TRP326 LYS327 GLN328 ALA329 PHE330 ALA331 MSE332 ALA333 HIS334 PHE335 ASN336 PRO337 ASP338 ILE339 ALA340 LYS341 GLU342 ASN343 ILE344 ARG345 ALA346 VAL347 PHE348 SER349 TRP350 GLN351 ILE352 GLN353 PRO354 GLY355 ASP356 SER357 VAL358 ARG359 PRO360 GLN361 ASP362 VAL363 GLY364 PHE365 VAL366 PRO367 ASP368 LEU369 ILE370 ALA371 TRP372 ASN373 LEU374 SER375 PRO376 GLU377 ARG378 GLY379 GLY380 ASP381 GLY382 GLY383 ASN384 TRP385 ASN386 GLU387 ARG388 ASN389 THR390 LYS391 PRO392 SER393 LEU394 ALA395 ALA396 TRP397 SER398 VAL399 MSE400 GLU401 VAL402 TYR403 ASN404 VAL405 THR406 GLN407 ASP408 LYS409 THR410 TRP411 VAL412 ALA413 GLU414 MSE415 TYR416 PRO417 LYS418 LEU419 VAL420 ALA421 TYR422 HIS423 ASP424 TRP425 TRP426 LEU427 ARG428 ASN429 ARG430 ASP431 HIS432 ASN433 GLY434 ASN435 GLY436 VAL437 PRO438 GLU439 TYR440 GLY441 ALA442 THR443 ARG444 ASP445 LYS446 ALA447 HIS448 ASN449 THR450 GLU451 SER452 GLY453 GLU454 MSE455 LEU456 PHE457 THR458 VAL459 LYS460 LYS461 GLY462 ASP463 LYS464 GLU465 GLU466 THR467 GLN468 SER469 GLY470 LEU471 ASN472 ASN473 TYR474 ALA475 ARG476 VAL477 VAL478 GLU479 LYS480 GLY481 GLN482 TYR483 ASP484 SER485 LEU486 GLU487 ILE488 PRO489 ALA490 GLN491 VAL492 ALA493 ALA494 SER495 TRP496 GLU497 SER498 GLY499 ARG500 ASP501 ASP502 ALA503 ALA504 VAL505 PHE506 GLY507 PHE508 ILE509 ASP510 LYS511 GLU512 GLN513 LEU514 ASP515 LYS516 TYR517 VAL518 ALA519 ASN520 GLY521 GLY522 LYS523 ARG524 SER525 ASP526 TRP527 THR528 VAL529 LYS530 PHE531 ALA532 GLU533 ASN534 ARG535 SER536 GLN537 ASP538 GLY539 THR540 LEU541 LEU542 GLY543 TYR544 SER545 LEU546 LEU547 GLN548 GLU549 SER550 VAL551 ASP552 GLN553 ALA554 SER555 TYR556 MSE557 TYR558 SER559 ASP560 ASN561 HIS562 TYR563 LEU564 ALA565 GLU566 MSE567 ALA568 THR569 ILE570 LEU571 GLY572 LYS573 PRO574 GLU575 GLU576 ALA577 LYS578 ARG579 TYR580 ARG581 GLN582 LEU583 ALA584 GLN585 GLN586 LEU587 ALA588 ASP589 TYR590 ILE591 ASN592 THR593 CYS594 MSE595 PHE596 ASP597 PRO598 THR599 THR600 GLN601 PHE602 TYR603 TYR604 ASP605 VAL606 ARG607 ILE608 GLU609 ASP610 LYS611 PRO612 LEU613 ALA614 ASN615 GLY616 CYS617 ALA618 GLY619 LYS620 PRO621 ILE622 VAL623 GLU624 ARG625 GLY626 LYS627 GLY628 PRO629 GLU630 GLY631 TRP632 SER633 PRO634 LEU635 PHE636 ASN637 GLY638 ALA639 ALA640 THR641 GLN642 ALA643 ASN644 ALA645 ASP646 ALA647 VAL648 VAL649 LYS650 VAL651 MSE652 LEU653 ASP654 PRO655 LYS656 GLU657 PHE658 ASN659 THR660 PHE661 VAL662 PRO663 LEU664 GLY665 THR666 ALA667 ALA668 LEU669 THR670 ASN671 PRO672 ALA673 PHE674 GLY675 ALA676 ASP677 ILE678 TYR679 TRP680 ARG681 GLY682 ARG683 VAL684 TRP685 VAL686 ASP687 GLN688 PHE689 TRP690 PHE691 GLY692 LEU693 LYS694 GLY695 MSE696 GLU697 ARG698 TYR699 GLY700 TYR701 ARG702 ASP703 ASP704 ALA705 LEU706 LYS707 LEU708 ALA709 ASP710 THR711 PHE712 PHE713 ARG714 HIS715 ALA716 LYS717 GLY718 LEU719 THR720 ALA721 ASP722 GLY723 PRO724 ILE725 GLN726 GLU727 ASN728 TYR729 ASN730 PRO731 LEU732 THR733 GLY734 ALA735 GLN736 GLN737 GLY738 ALA739 PRO740 ASN741 PHE742 SER743 TRP744 SER745 ALA746 ALA747 HIS748 LEU749 TYR750 MSE751 LEU752 TYR753 ASN754 ASP755 PHE756 PHE757 ARG758 LYS759 |
| Unit 2 | ALA2 ASP3 ASN4 TYR5 LYS6 ASN7 VAL8 ILE9 ASN10 ARG11 THR12 GLY13 ALA14 PRO15 GLN16 TYR17 MSE18 LYS19 ASP20 TYR21 ASP22 TYR23 ASP24 ASP25 HIS26 GLN27 ARG28 PHE29 ASN30 PRO31 PHE32 PHE33 ASP34 LEU35 GLY36 ALA37 TRP38 HIS39 GLY40 HIS41 LEU42 LEU43 PRO44 ASP45 GLY46 PRO47 ASN48 THR49 MSE50 GLY51 GLY52 PHE53 PRO54 GLY55 VAL56 ALA57 LEU58 LEU59 THR60 GLU61 GLU62 TYR63 ILE64 ASN65 PHE66 MSE67 ALA68 SER69 ASN70 PHE71 ASP72 ARG73 LEU74 THR75 VAL76 TRP77 GLN78 ASP79 GLY80 LYS81 LYS82 VAL83 ASP84 PHE85 THR86 LEU87 GLU88 ALA89 TYR90 SER91 ILE92 PRO93 GLY94 ALA95 LEU96 VAL97 GLN98 LYS99 LEU100 THR101 ALA102 LYS103 ASP104 VAL105 GLN106 VAL107 GLU108 MSE109 THR110 LEU111 ARG112 PHE113 ALA114 THR115 PRO116 ARG117 THR118 SER119 LEU120 LEU121 GLU122 THR123 LYS124 ILE125 THR126 SER127 ASN128 LYS129 PRO130 LEU131 ASP132 LEU133 VAL134 TRP135 ASP136 GLY137 GLU138 LEU139 LEU140 GLU141 LYS142 LEU143 GLU144 ALA145 LYS146 GLU147 GLY148 LYS149 PRO150 LEU151 SER152 ASP153 LYS154 THR155 ILE156 ALA157 GLY158 GLU159 TYR160 PRO161 ASP162 TYR163 GLN164 ARG165 LYS166 ILE167 SER168 ALA169 THR170 ARG171 ASP172 GLY173 LEU174 LYS175 VAL176 THR177 PHE178 GLY179 LYS180 VAL181 ARG182 ALA183 THR184 TRP185 ASP186 LEU187 LEU188 THR189 SER190 GLY191 GLU192 SER193 GLU194 TYR195 GLN196 VAL197 HIS198 LYS199 SER200 LEU201 PRO202 VAL203 GLN204 THR205 GLU206 ILE207 ASN208 GLY209 ASN210 ARG211 PHE212 THR213 SER214 LYS215 ALA216 HIS217 ILE218 ASN219 GLY220 SER221 THR222 THR223 LEU224 TYR225 THR226 THR227 TYR228 SER229 HIS230 LEU231 LEU232 THR233 ALA234 GLN235 GLU236 VAL237 SER238 LYS239 GLU240 GLN241 MSE242 GLN243 ILE244 ARG245 ASP246 ILE247 LEU248 ALA249 ARG250 PRO251 ALA252 PHE253 TYR254 LEU255 THR256 ALA257 SER258 GLN259 GLN260 ARG261 TRP262 GLU263 GLU264 TYR265 LEU266 LYS267 LYS268 GLY269 LEU270 THR271 ASN272 PRO273 ASP274 ALA275 THR276 PRO277 GLU278 GLN279 THR280 ARG281 VAL282 ALA283 VAL284 LYS285 ALA286 ILE287 GLU288 THR289 LEU290 ASN291 GLY292 ASN293 TRP294 ARG295 SER296 PRO297 GLY298 GLY299 ALA300 VAL301 LYS302 PHE303 ASN304 THR305 VAL306 THR307 PRO308 SER309 VAL310 THR311 GLY312 ARG313 TRP314 PHE315 SER316 GLY317 ASN318 GLN319 THR320 TRP321 PRO322 TRP323 ASP324 THR325 TRP326 LYS327 GLN328 ALA329 PHE330 ALA331 MSE332 ALA333 HIS334 PHE335 ASN336 PRO337 ASP338 ILE339 ALA340 LYS341 GLU342 ASN343 ILE344 ARG345 ALA346 VAL347 PHE348 SER349 TRP350 GLN351 ILE352 GLN353 PRO354 GLY355 ASP356 SER357 VAL358 ARG359 PRO360 GLN361 ASP362 VAL363 GLY364 PHE365 VAL366 PRO367 ASP368 LEU369 ILE370 ALA371 TRP372 ASN373 LEU374 SER375 PRO376 GLU377 ARG378 GLY379 GLY380 ASP381 GLY382 GLY383 ASN384 TRP385 ASN386 GLU387 ARG388 ASN389 THR390 LYS391 PRO392 SER393 LEU394 ALA395 ALA396 TRP397 SER398 VAL399 MSE400 GLU401 VAL402 TYR403 ASN404 VAL405 THR406 GLN407 ASP408 LYS409 THR410 TRP411 VAL412 ALA413 GLU414 MSE415 TYR416 PRO417 LYS418 LEU419 VAL420 ALA421 TYR422 HIS423 ASP424 TRP425 TRP426 LEU427 ARG428 ASN429 ARG430 ASP431 HIS432 ASN433 GLY434 ASN435 GLY436 VAL437 PRO438 GLU439 TYR440 GLY441 ALA442 THR443 ARG444 ASP445 LYS446 ALA447 HIS448 ASN449 THR450 GLU451 SER452 GLY453 GLU454 MSE455 LEU456 PHE457 THR458 VAL459 LYS460 LYS461 GLY462 ASP463 LYS464 GLU465 GLU466 THR467 GLN468 SER469 GLY470 LEU471 ASN472 ASN473 TYR474 ALA475 ARG476 VAL477 VAL478 GLU479 LYS480 GLY481 GLN482 TYR483 ASP484 SER485 LEU486 GLU487 ILE488 PRO489 ALA490 GLN491 VAL492 ALA493 ALA494 SER495 TRP496 GLU497 SER498 GLY499 ARG500 ASP501 ASP502 ALA503 ALA504 VAL505 PHE506 GLY507 PHE508 ILE509 ASP510 LYS511 GLU512 GLN513 LEU514 ASP515 LYS516 TYR517 VAL518 ALA519 ASN520 GLY521 GLY522 LYS523 ARG524 SER525 ASP526 TRP527 THR528 VAL529 LYS530 PHE531 ALA532 GLU533 ASN534 ARG535 SER536 GLN537 ASP538 GLY539 THR540 LEU541 LEU542 GLY543 TYR544 SER545 LEU546 LEU547 GLN548 GLU549 SER550 VAL551 ASP552 GLN553 ALA554 SER555 TYR556 MSE557 TYR558 SER559 ASP560 ASN561 HIS562 TYR563 LEU564 ALA565 GLU566 MSE567 ALA568 THR569 ILE570 LEU571 GLY572 LYS573 PRO574 GLU575 GLU576 ALA577 LYS578 ARG579 TYR580 ARG581 GLN582 LEU583 ALA584 GLN585 GLN586 LEU587 ALA588 ASP589 TYR590 ILE591 ASN592 THR593 CYS594 MSE595 PHE596 ASP597 PRO598 THR599 THR600 GLN601 PHE602 TYR603 TYR604 ASP605 VAL606 ARG607 ILE608 GLU609 ASP610 LYS611 PRO612 LEU613 ALA614 ASN615 GLY616 CYS617 ALA618 GLY619 LYS620 PRO621 ILE622 VAL623 GLU624 ARG625 GLY626 LYS627 GLY628 PRO629 GLU630 GLY631 TRP632 SER633 PRO634 LEU635 PHE636 ASN637 GLY638 ALA639 ALA640 THR641 GLN642 ALA643 ASN644 ALA645 ASP646 ALA647 VAL648 VAL649 LYS650 VAL651 MSE652 LEU653 ASP654 PRO655 LYS656 GLU657 PHE658 ASN659 THR660 PHE661 VAL662 PRO663 LEU664 GLY665 THR666 ALA667 ALA668 LEU669 THR670 ASN671 PRO672 ALA673 PHE674 GLY675 ALA676 ASP677 ILE678 TYR679 TRP680 ARG681 GLY682 ARG683 VAL684 TRP685 VAL686 ASP687 GLN688 PHE689 TRP690 PHE691 GLY692 LEU693 LYS694 GLY695 MSE696 GLU697 ARG698 TYR699 GLY700 TYR701 ARG702 ASP703 ASP704 ALA705 LEU706 LYS707 LEU708 ALA709 ASP710 THR711 PHE712 PHE713 ARG714 HIS715 ALA716 LYS717 GLY718 LEU719 THR720 ALA721 ASP722 GLY723 PRO724 ILE725 GLN726 GLU727 ASN728 TYR729 ASN730 PRO731 LEU732 THR733 GLY734 ALA735 GLN736 GLN737 GLY738 ALA739 PRO740 ASN741 PHE742 SER743 TRP744 SER745 ALA746 ALA747 HIS748 LEU749 TYR750 MSE751 LEU752 TYR753 ASN754 ASP755 PHE756 PHE757 ARG758 LYS759 |
| Unit 3 | CA1001 GOL2001 GOL2002 |
| Unit 4 | CA1001 GOL2001 GOL2002 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |