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Title | CRYSTAL STRUCTURE OF NEW TRIGONAL FORM OF PHOTOSYNTHETIC REA CENTER FROM BLASTOCHLORIS VIRIDIS. CRYSTALS GROWN IN MICROF DETERGENT CAPTURE. | |
Keywords | DETERGENT EXTRACTION, REACTION CENTER, MICROFLUDICS, PLUGS, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, ACCELERATED TECHNOLOGIES CENTER FOR GENE TO 3D STRUCTURE, A ELECTRON TRANSPORT, HEME, IRON, LIPOPROTEIN, MEMBRANE, META BINDING, PHOTOSYNTHESIS, TRANSPORT, BACTERIOCHLOROPHYLL, CHLOROPHYLL, CHROMOPHORE, FORMYLATION, TRANSMEMBRANE, MAGNE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3D38 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | C | 332 | 2598 | 0 | |
2 | Protein | REACTION CENTER PROTEIN H CHAIN | H | 250 | 1948 | 10 |
3 | Protein | REACTION CENTER PROTEIN L CHAIN | L | 273 | 2171 | 0 |
4 | Protein | REACTION CENTER PROTEIN M CHAIN | M | 323 | 2555 | 0 |
5 | Ligand | C | 13 | 0 | 227 | |
6 | Ligand | REACTION CENTER PROTEIN H CHAIN | H | 7 | 0 | 62 |
7 | Ligand | REACTION CENTER PROTEIN L CHAIN | L | 6 | 0 | 249 |
8 | Ligand | REACTION CENTER PROTEIN M CHAIN | M | 11 | 0 | 332 |
9 | Water | 159 | 0 | 159 | ||
total | 1374 | 9272 | 1039 |
Unit 1 | CYS1 PHE2 GLU3 PRO4 PRO5 PRO6 ALA7 THR8 THR9 THR10 GLN11 THR12 GLY13 PHE14 ARG15 GLY16 LEU17 SER18 MET19 GLY20 GLU21 VAL22 LEU23 HIS24 PRO25 ALA26 THR27 VAL28 LYS29 ALA30 LYS31 LYS32 GLU33 ARG34 ASP35 ALA36 GLN37 TYR38 PRO39 PRO40 ALA41 LEU42 ALA43 ALA44 VAL45 LYS46 ALA47 GLU48 GLY49 PRO50 PRO51 VAL52 SER53 GLN54 VAL55 TYR56 LYS57 ASN58 VAL59 LYS60 VAL61 LEU62 GLY63 ASN64 LEU65 THR66 GLU67 ALA68 GLU69 PHE70 LEU71 ARG72 THR73 MET74 THR75 ALA76 ILE77 THR78 GLU79 TRP80 VAL81 SER82 PRO83 GLN84 GLU85 GLY86 CYS87 THR88 TYR89 CYS90 HIS91 ASP92 GLU93 ASN94 ASN95 LEU96 ALA97 SER98 GLU99 ALA100 LYS101 TYR102 PRO103 TYR104 VAL105 VAL106 ALA107 ARG108 ARG109 MET110 LEU111 GLU112 MET113 THR114 ARG115 ALA116 ILE117 ASN118 THR119 ASN120 TRP121 THR122 GLN123 HIS124 VAL125 ALA126 GLN127 THR128 GLY129 VAL130 THR131 CYS132 TYR133 THR134 CYS135 HIS136 ARG137 GLY138 THR139 PRO140 LEU141 PRO142 PRO143 TYR144 VAL145 ARG146 TYR147 LEU148 GLU149 PRO150 THR151 LEU152 PRO153 LEU154 ASN155 ASN156 ARG157 GLU158 THR159 PRO160 THR161 HIS162 VAL163 GLU164 ARG165 VAL166 GLU167 THR168 ARG169 SER170 GLY171 TYR172 VAL173 VAL174 ARG175 LEU176 ALA177 LYS178 TYR179 THR180 ALA181 TYR182 SER183 ALA184 LEU185 ASN186 TYR187 ASP188 PRO189 PHE190 THR191 MET192 PHE193 LEU194 ALA195 ASN196 ASP197 LYS198 ARG199 GLN200 VAL201 ARG202 VAL203 VAL204 PRO205 GLN206 THR207 ALA208 LEU209 PRO210 LEU211 VAL212 GLY213 VAL214 SER215 ARG216 GLY217 LYS218 GLU219 ARG220 ARG221 PRO222 LEU223 SER224 ASP225 ALA226 TYR227 ALA228 THR229 PHE230 ALA231 LEU232 MET233 MET234 SER235 ILE236 SER237 ASP238 SER239 LEU240 GLY241 THR242 ASN243 CYS244 THR245 PHE246 CYS247 HIS248 ASN249 ALA250 GLN251 THR252 PHE253 GLU254 SER255 TRP256 GLY257 LYS258 LYS259 SER260 THR261 PRO262 GLN263 ARG264 ALA265 ILE266 ALA267 TRP268 TRP269 GLY270 ILE271 ARG272 MET273 VAL274 ARG275 ASP276 LEU277 ASN278 MET279 ASN280 TYR281 LEU282 ALA283 PRO284 LEU285 ASN286 ALA287 SER288 LEU289 PRO290 ALA291 SER292 ARG293 LEU294 GLY295 ARG296 GLN297 GLY298 GLU299 ALA300 PRO301 GLN302 ALA303 ASP304 CYS305 ARG306 THR307 CYS308 HIS309 GLN310 GLY311 VAL312 THR313 LYS314 PRO315 LEU316 PHE317 GLY318 ALA319 SER320 ARG321 LEU322 LYS323 ASP324 TYR325 PRO326 GLU327 LEU328 GLY329 PRO330 ILE331 LYS332 |
Unit 2 | FME1 TYR2 HIS3 GLY4 ALA5 LEU6 ALA7 GLN8 HIS9 LEU10 ASP11 ILE12 ALA13 GLN14 LEU15 VAL16 TRP17 TYR18 ALA19 GLN20 TRP21 LEU22 VAL23 ILE24 TRP25 THR26 VAL27 VAL28 LEU29 LEU30 TYR31 LEU32 ARG33 ARG34 GLU35 ASP36 ARG37 ARG38 GLU39 GLY40 TYR41 PRO42 LEU43 VAL44 GLU45 PRO54 GLU55 ASP56 GLY57 GLN58 VAL59 TYR60 GLU61 LEU62 PRO63 TYR64 PRO65 LYS66 THR67 PHE68 VAL69 LEU70 PRO71 HIS72 GLY73 GLY74 THR75 VAL76 THR77 VAL78 PRO79 ARG80 ARG81 ARG82 PRO83 GLU84 THR85 ARG86 GLU87 LEU88 LYS89 LEU90 ALA91 GLN92 THR93 ASP94 GLY95 PHE96 GLU97 GLY98 ALA99 PRO100 LEU101 GLN102 PRO103 THR104 GLY105 ASN106 PRO107 LEU108 VAL109 ASP110 ALA111 VAL112 GLY113 PRO114 ALA115 SER116 TYR117 ALA118 GLU119 ARG120 ALA121 GLU122 VAL123 VAL124 ASP125 ALA126 THR127 VAL128 ASP129 GLY130 LYS131 ALA132 LYS133 ILE134 VAL135 PRO136 LEU137 ARG138 VAL139 ALA140 THR141 ASP142 PHE143 SER144 ILE145 ALA146 GLU147 GLY148 ASP149 VAL150 ASP151 PRO152 ARG153 GLY154 LEU155 PRO156 VAL157 VAL158 ALA159 ALA160 ASP161 GLY162 VAL163 GLU164 ALA165 GLY166 THR167 VAL168 THR169 ASP170 LEU171 TRP172 VAL173 ASP174 ARG175 SER176 GLU177 HIS178 TYR179 PHE180 ARG181 TYR182 LEU183 GLU184 LEU185 SER186 VAL187 ALA188 GLY189 SER190 ALA191 ARG192 THR193 ALA194 LEU195 ILE196 PRO197 LEU198 GLY199 PHE200 CYS201 ASP202 VAL203 LYS204 LYS205 ASP206 LYS207 ILE208 VAL209 VAL210 THR211 SER212 ILE213 LEU214 SER215 GLU216 GLN217 PHE218 ALA219 ASN220 VAL221 PRO222 ARG223 LEU224 GLN225 SER226 ARG227 ASP228 GLN229 ILE230 THR231 LEU232 ARG233 GLU234 GLU235 ASP236 LYS237 VAL238 SER239 ALA240 TYR241 TYR242 ALA243 GLY244 GLY245 LEU246 LEU247 TYR248 ALA249 THR250 PRO251 GLU252 ARG253 ALA254 GLU255 SER256 LEU257 LEU258 |
Unit 3 | ALA1 LEU2 LEU3 SER4 PHE5 GLU6 ARG7 LYS8 TYR9 ARG10 VAL11 ARG12 GLY13 GLY14 THR15 LEU16 ILE17 GLY18 GLY19 ASP20 LEU21 PHE22 ASP23 PHE24 TRP25 VAL26 GLY27 PRO28 TYR29 PHE30 VAL31 GLY32 PHE33 PHE34 GLY35 VAL36 SER37 ALA38 ILE39 PHE40 PHE41 ILE42 PHE43 LEU44 GLY45 VAL46 SER47 LEU48 ILE49 GLY50 TYR51 ALA52 ALA53 SER54 GLN55 GLY56 PRO57 THR58 TRP59 ASP60 PRO61 PHE62 ALA63 ILE64 SER65 ILE66 ASN67 PRO68 PRO69 ASP70 LEU71 LYS72 TYR73 GLY74 LEU75 GLY76 ALA77 ALA78 PRO79 LEU80 LEU81 GLU82 GLY83 GLY84 PHE85 TRP86 GLN87 ALA88 ILE89 THR90 VAL91 CYS92 ALA93 LEU94 GLY95 ALA96 PHE97 ILE98 SER99 TRP100 MET101 LEU102 ARG103 GLU104 VAL105 GLU106 ILE107 SER108 ARG109 LYS110 LEU111 GLY112 ILE113 GLY114 TRP115 HIS116 VAL117 PRO118 LEU119 ALA120 PHE121 CYS122 VAL123 PRO124 ILE125 PHE126 MET127 PHE128 CYS129 VAL130 LEU131 GLN132 VAL133 PHE134 ARG135 PRO136 LEU137 LEU138 LEU139 GLY140 SER141 TRP142 GLY143 HIS144 ALA145 PHE146 PRO147 TYR148 GLY149 ILE150 LEU151 SER152 HIS153 LEU154 ASP155 TRP156 VAL157 ASN158 ASN159 PHE160 GLY161 TYR162 GLN163 TYR164 LEU165 ASN166 TRP167 HIS168 TYR169 ASN170 PRO171 GLY172 HIS173 MET174 SER175 SER176 VAL177 SER178 PHE179 LEU180 PHE181 VAL182 ASN183 ALA184 MET185 ALA186 LEU187 GLY188 LEU189 HIS190 GLY191 GLY192 LEU193 ILE194 LEU195 SER196 VAL197 ALA198 ASN199 PRO200 GLY201 ASP202 GLY203 ASP204 LYS205 VAL206 LYS207 THR208 ALA209 GLU210 HIS211 GLU212 ASN213 GLN214 TYR215 PHE216 ARG217 ASP218 VAL219 VAL220 GLY221 TYR222 SER223 ILE224 GLY225 ALA226 LEU227 SER228 ILE229 HIS230 ARG231 LEU232 GLY233 LEU234 PHE235 LEU236 ALA237 SER238 ASN239 ILE240 PHE241 LEU242 THR243 GLY244 ALA245 PHE246 GLY247 THR248 ILE249 ALA250 SER251 GLY252 PRO253 PHE254 TRP255 THR256 ARG257 GLY258 TRP259 PRO260 GLU261 TRP262 TRP263 GLY264 TRP265 TRP266 LEU267 ASP268 ILE269 PRO270 PHE271 TRP272 SER273 |
Unit 4 | ALA1 ASP2 TYR3 GLN4 THR5 ILE6 TYR7 THR8 GLN9 ILE10 GLN11 ALA12 ARG13 GLY14 PRO15 HIS16 ILE17 THR18 VAL19 SER20 GLY21 GLU22 TRP23 GLY24 ASP25 ASN26 ASP27 ARG28 VAL29 GLY30 LYS31 PRO32 PHE33 TYR34 SER35 TYR36 TRP37 LEU38 GLY39 LYS40 ILE41 GLY42 ASP43 ALA44 GLN45 ILE46 GLY47 PRO48 ILE49 TYR50 LEU51 GLY52 ALA53 SER54 GLY55 ILE56 ALA57 ALA58 PHE59 ALA60 PHE61 GLY62 SER63 THR64 ALA65 ILE66 LEU67 ILE68 ILE69 LEU70 PHE71 ASN72 MET73 ALA74 ALA75 GLU76 VAL77 HIS78 PHE79 ASP80 PRO81 LEU82 GLN83 PHE84 PHE85 ARG86 GLN87 PHE88 PHE89 TRP90 LEU91 GLY92 LEU93 TYR94 PRO95 PRO96 LYS97 ALA98 GLN99 TYR100 GLY101 MET102 GLY103 ILE104 PRO105 PRO106 LEU107 HIS108 ASP109 GLY110 GLY111 TRP112 TRP113 LEU114 MET115 ALA116 GLY117 LEU118 PHE119 MET120 THR121 LEU122 SER123 LEU124 GLY125 SER126 TRP127 TRP128 ILE129 ARG130 VAL131 TYR132 SER133 ARG134 ALA135 ARG136 ALA137 LEU138 GLY139 LEU140 GLY141 THR142 HIS143 ILE144 ALA145 TRP146 ASN147 PHE148 ALA149 ALA150 ALA151 ILE152 PHE153 PHE154 VAL155 LEU156 CYS157 ILE158 GLY159 CYS160 ILE161 HIS162 PRO163 THR164 LEU165 VAL166 GLY167 SER168 TRP169 SER170 GLU171 GLY172 VAL173 PRO174 PHE175 GLY176 ILE177 TRP178 PRO179 HIS180 ILE181 ASP182 TRP183 LEU184 THR185 ALA186 PHE187 SER188 ILE189 ARG190 TYR191 GLY192 ASN193 PHE194 TYR195 TYR196 CYS197 PRO198 TRP199 HIS200 GLY201 PHE202 SER203 ILE204 GLY205 PHE206 ALA207 TYR208 GLY209 CYS210 GLY211 LEU212 LEU213 PHE214 ALA215 ALA216 HIS217 GLY218 ALA219 THR220 ILE221 LEU222 ALA223 VAL224 ALA225 ARG226 PHE227 GLY228 GLY229 ASP230 ARG231 GLU232 ILE233 GLU234 GLN235 ILE236 THR237 ASP238 ARG239 GLY240 THR241 ALA242 VAL243 GLU244 ARG245 ALA246 ALA247 LEU248 PHE249 TRP250 ARG251 TRP252 THR253 ILE254 GLY255 PHE256 ASN257 ALA258 THR259 ILE260 GLU261 SER262 VAL263 HIS264 ARG265 TRP266 GLY267 TRP268 PHE269 PHE270 SER271 LEU272 MET273 VAL274 MET275 VAL276 SER277 ALA278 SER279 VAL280 GLY281 ILE282 LEU283 LEU284 THR285 GLY286 THR287 PHE288 VAL289 ASP290 ASN291 TRP292 TYR293 LEU294 TRP295 CYS296 VAL297 LYS298 HIS299 GLY300 ALA301 ALA302 PRO303 ASP304 TYR305 PRO306 ALA307 TYR308 LEU309 PRO310 ALA311 THR312 PRO313 ASP314 PRO315 ALA316 SER317 LEU318 PRO319 GLY320 ALA321 PRO322 LYS323 |
Unit 5 | HEC401 HEC402 HEC403 HEC404 HTO706 HTO707 SO4808 SO4809 SO4810 SO4811 SO4813 SO4814 SO4815 |
Unit 6 | LDA701 LDA703 HTO705 SO4803 SO4806 SO4807 SO4812 |
Unit 7 | BCB400 BCB401 BPB402 UQ1502 UQ1503 LDA702 |
Unit 8 | BCB400 BCB401 BPB402 FE2500 MQ9501 NS5600 LDA704 SO4801 SO4802 SO4804 SO4805 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |