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Title | STRUCTURAL BASIS OF THIAMINE PYROPHOSPHATE ANALOGUES BINDING EUKARYOTIC RIBOSWITCH | |
Keywords | RNA, RIBOSWITCH, TPP, THIAMINE ANALOGUES, ANTIBIOTICS, ARABI THALIANA, EUKARYOTE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3D2G | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 77 | 1655 | 0 | |
2 | RNA | B | 77 | 1655 | 0 | |
3 | Ligand | TPP-SPECIFIC RIBOSWITCH | B | 2 | 0 | 2 |
4 | Ligand | TPP-SPECIFIC RIBOSWITCH | A | 3 | 0 | 3 |
5 | Ligand | TPP-SPECIFIC RIBOSWITCH | B | 1 | 0 | 1 |
6 | Ligand | TPP-SPECIFIC RIBOSWITCH | A | 2 | 0 | 2 |
7 | Ligand | TPP-SPECIFIC RIBOSWITCH | B | 2 | 0 | 2 |
8 | Ligand | TPP-SPECIFIC RIBOSWITCH | A | 1 | 0 | 26 |
9 | Ligand | TPP-SPECIFIC RIBOSWITCH | B | 1 | 0 | 26 |
10 | Water | 163 | 0 | 163 | ||
total | 329 | 3310 | 225 |
Unit 1 | G1 G2 G3 A4 C5 C6 A7 G8 G9 G10 G11 U12 G13 C14 U15 U16 G17 U18 U19 C20 A21 C22 A23 G24 G25 C26 U27 G28 A29 G30 A31 A32 A33 G34 U35 C36 C37 C38 U39 U40 U41 G42 A43 A44 C45 C46 U47 G48 A49 A50 C51 A52 G53 G54 G55 U56 A57 A58 U59 G60 C61 C62 U63 G64 C65 G66 C67 A68 G69 G70 G71 A72 G73 U74 G75 U76 C77 |
Unit 2 | G1 G2 G3 A4 C5 C6 A7 G8 G9 G10 G11 U12 G13 C14 U15 U16 G17 U18 U19 C20 A21 C22 A23 G24 G25 C26 U27 G28 A29 G30 A31 A32 A33 G34 U35 C36 C37 C38 U39 U40 U41 G42 A43 A44 C45 C46 U47 G48 A49 A50 C51 A52 G53 G54 G55 U56 A57 A58 U59 G60 C61 C62 U63 G64 C65 G66 C67 A68 G69 G70 G71 A72 G73 U74 G75 U76 C77 |
Unit 3 | MG78 MG79 |
Unit 4 | MG78 MG79 MG80 |
Unit 5 | MG80 |
Unit 6 | MG81 MG82 |
Unit 7 | MG81 MG82 |
Unit 8 | TPP83 |
Unit 9 | TPP83 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |