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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TOMATO ASPERMY VIRUS 2B IN COMPLEX WITH
Keywords PROTEIN-DSRNA COMPLEX, COILED COIL, NUCLEUS, SUPPRESSOR OF R SILENCING, VIRAL PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3CZ3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA/protein    E 58 1768 0
2  RNA    F 19 404 0
3  DNA/RNA/protein    G 58 1768 0
4  RNA    H 19 404 0
5  DNA/RNA/protein    A 58 1768 0
6  Protein   PROTEIN 2B  B 56 485 0
7  DNA/RNA/protein    C 58 1768 0
8  Protein   PROTEIN 2B  D 56 485 0
total       382 8850 0

Proteins
Unit 6 SER3 ILE4 GLU5 ILE6 PRO7 LEU8 HIS9 GLU10 ILE11 ILE12 ARG13 LYS14 LEU15 GLU16 ARG17 MET18 ASN19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58
Unit 8 SER3 ILE4 GLU5 ILE6 PRO7 LEU8 HIS9 GLU10 ILE11 ILE12 ARG13 LYS14 LEU15 GLU16 ARG17 MET18 ASN19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58

Nucleic acids
Unit 1 C1 G2 U3 A4 C5 G6 C7 G8 G9 A10 A11 U12 A13 C14 U15 U16 C17 G18 A19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58
Unit 2 U1 C2 G3 A4 A5 G6 U7 A8 U9 U10 C11 C12 G13 C14 G15 U16 A17 C18 G19
Unit 3 C1 G2 U3 A4 C5 G6 C7 G8 G9 A10 A11 U12 A13 C14 U15 U16 C17 G18 A19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58
Unit 4 U1 C2 G3 A4 A5 G6 U7 A8 U9 U10 C11 C12 G13 C14 G15 U16 A17 C18 G19
Unit 5 C1 G2 U3 A4 C5 G6 C7 G8 G9 A10 A11 U12 A13 C14 U15 U16 C17 G18 A19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58
Unit 7 C1 G2 U3 A4 C5 G6 C7 G8 G9 A10 A11 U12 A13 C14 U15 U16 C17 G18 A19 GLN20 LYS21 LYS22 GLN23 ALA24 GLN25 ARG26 LYS27 ARG28 HIS29 LYS30 LEU31 ASN32 ARG33 LYS34 GLU35 ARG36 GLY37 HIS38 LYS39 SER40 PRO41 SER42 GLU43 GLN44 ARG45 ARG46 SER47 GLU48 LEU49 TRP50 HIS51 ALA52 ARG53 GLN54 VAL55 GLU56 LEU57 SER58

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany