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Title | CRYSTAL STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN RECOGNITIO WITH ALPHA-D-GLUCOPYRANOSYL ALPHA-D-GLUCOPYRANOSIDE AT 3.4 RESOLUTION | |
Keywords | PEPTIDOGLYCAN RECOGNITION PROTEIN, COMPLEX, TREHALOSE, IMMUN RESPONSE, SECRETED, ANTIMICROBIAL, PGRP, ANTIBIOTIC | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3CXA | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | PEPTIDOGLYCAN RECOGNITION PROTEIN | A | 171 | 1336 | 0 |
2 | Protein | PEPTIDOGLYCAN RECOGNITION PROTEIN | B | 171 | 1336 | 0 |
3 | Protein | PEPTIDOGLYCAN RECOGNITION PROTEIN | C | 171 | 1336 | 0 |
4 | Protein | PEPTIDOGLYCAN RECOGNITION PROTEIN | D | 171 | 1336 | 0 |
5 | Ligand | E | 2 | 0 | 23 | |
6 | Ligand | F | 2 | 0 | 23 | |
7 | Ligand | PEPTIDOGLYCAN RECOGNITION PROTEIN | C | 1 | 0 | 10 |
total | 689 | 5344 | 56 |
Unit 1 | GLU1 ASP2 PRO3 PRO4 ALA5 CYS6 GLY7 SER8 ILE9 VAL10 PRO11 ARG12 ARG13 GLU14 TRP15 ARG16 ALA17 LEU18 ALA19 SER20 GLU21 CYS22 ARG23 GLU24 ARG25 LEU26 THR27 ARG28 PRO29 VAL30 ARG31 TYR32 VAL33 VAL34 VAL35 SER36 HIS37 THR38 ALA39 GLY40 SER41 HIS42 CYS43 ASP44 THR45 PRO46 ALA47 SER48 CYS49 ALA50 GLN51 GLN52 ALA53 GLN54 ASN55 VAL56 GLN57 SER58 TYR59 HIS60 VAL61 ARG62 ASN63 LEU64 GLY65 TRP66 CYS67 ASP68 VAL69 GLY70 TYR71 ASN72 PHE73 LEU74 ILE75 GLY76 GLU77 ASP78 GLY79 LEU80 VAL81 TYR82 GLU83 GLY84 ARG85 GLY86 TRP87 ASN88 ILE89 LYS90 GLY91 ALA92 HIS93 ALA94 GLY95 PRO96 THR97 TRP98 ASN99 PRO100 ILE101 SER102 ILE103 GLY104 ILE105 SER106 PHE107 MET108 GLY109 ASN110 TYR111 MET112 ASN113 ARG114 VAL115 PRO116 PRO117 PRO118 ARG119 ALA120 LEU121 ARG122 ALA123 ALA124 GLN125 ASN126 LEU127 LEU128 ALA129 CYS130 GLY131 VAL132 ALA133 LEU134 GLY135 ALA136 LEU137 ARG138 SER139 ASN140 TYR141 GLU142 VAL143 LYS144 GLY145 HIS146 ARG147 ASP148 VAL149 GLN150 PRO151 THR152 LEU153 SER154 PRO155 GLY156 ASP157 ARG158 LEU159 TYR160 GLU161 ILE162 ILE163 GLN164 THR165 TRP166 SER167 HIS168 TYR169 ARG170 ALA171 |
Unit 2 | GLU1 ASP2 PRO3 PRO4 ALA5 CYS6 GLY7 SER8 ILE9 VAL10 PRO11 ARG12 ARG13 GLU14 TRP15 ARG16 ALA17 LEU18 ALA19 SER20 GLU21 CYS22 ARG23 GLU24 ARG25 LEU26 THR27 ARG28 PRO29 VAL30 ARG31 TYR32 VAL33 VAL34 VAL35 SER36 HIS37 THR38 ALA39 GLY40 SER41 HIS42 CYS43 ASP44 THR45 PRO46 ALA47 SER48 CYS49 ALA50 GLN51 GLN52 ALA53 GLN54 ASN55 VAL56 GLN57 SER58 TYR59 HIS60 VAL61 ARG62 ASN63 LEU64 GLY65 TRP66 CYS67 ASP68 VAL69 GLY70 TYR71 ASN72 PHE73 LEU74 ILE75 GLY76 GLU77 ASP78 GLY79 LEU80 VAL81 TYR82 GLU83 GLY84 ARG85 GLY86 TRP87 ASN88 ILE89 LYS90 GLY91 ALA92 HIS93 ALA94 GLY95 PRO96 THR97 TRP98 ASN99 PRO100 ILE101 SER102 ILE103 GLY104 ILE105 SER106 PHE107 MET108 GLY109 ASN110 TYR111 MET112 ASN113 ARG114 VAL115 PRO116 PRO117 PRO118 ARG119 ALA120 LEU121 ARG122 ALA123 ALA124 GLN125 ASN126 LEU127 LEU128 ALA129 CYS130 GLY131 VAL132 ALA133 LEU134 GLY135 ALA136 LEU137 ARG138 SER139 ASN140 TYR141 GLU142 VAL143 LYS144 GLY145 HIS146 ARG147 ASP148 VAL149 GLN150 PRO151 THR152 LEU153 SER154 PRO155 GLY156 ASP157 ARG158 LEU159 TYR160 GLU161 ILE162 ILE163 GLN164 THR165 TRP166 SER167 HIS168 TYR169 ARG170 ALA171 |
Unit 3 | GLU1 ASP2 PRO3 PRO4 ALA5 CYS6 GLY7 SER8 ILE9 VAL10 PRO11 ARG12 ARG13 GLU14 TRP15 ARG16 ALA17 LEU18 ALA19 SER20 GLU21 CYS22 ARG23 GLU24 ARG25 LEU26 THR27 ARG28 PRO29 VAL30 ARG31 TYR32 VAL33 VAL34 VAL35 SER36 HIS37 THR38 ALA39 GLY40 SER41 HIS42 CYS43 ASP44 THR45 PRO46 ALA47 SER48 CYS49 ALA50 GLN51 GLN52 ALA53 GLN54 ASN55 VAL56 GLN57 SER58 TYR59 HIS60 VAL61 ARG62 ASN63 LEU64 GLY65 TRP66 CYS67 ASP68 VAL69 GLY70 TYR71 ASN72 PHE73 LEU74 ILE75 GLY76 GLU77 ASP78 GLY79 LEU80 VAL81 TYR82 GLU83 GLY84 ARG85 GLY86 TRP87 ASN88 ILE89 LYS90 GLY91 ALA92 HIS93 ALA94 GLY95 PRO96 THR97 TRP98 ASN99 PRO100 ILE101 SER102 ILE103 GLY104 ILE105 SER106 PHE107 MET108 GLY109 ASN110 TYR111 MET112 ASN113 ARG114 VAL115 PRO116 PRO117 PRO118 ARG119 ALA120 LEU121 ARG122 ALA123 ALA124 GLN125 ASN126 LEU127 LEU128 ALA129 CYS130 GLY131 VAL132 ALA133 LEU134 GLY135 ALA136 LEU137 ARG138 SER139 ASN140 TYR141 GLU142 VAL143 LYS144 GLY145 HIS146 ARG147 ASP148 VAL149 GLN150 PRO151 THR152 LEU153 SER154 PRO155 GLY156 ASP157 ARG158 LEU159 TYR160 GLU161 ILE162 ILE163 GLN164 THR165 TRP166 SER167 HIS168 TYR169 ARG170 ALA171 |
Unit 4 | GLU1 ASP2 PRO3 PRO4 ALA5 CYS6 GLY7 SER8 ILE9 VAL10 PRO11 ARG12 ARG13 GLU14 TRP15 ARG16 ALA17 LEU18 ALA19 SER20 GLU21 CYS22 ARG23 GLU24 ARG25 LEU26 THR27 ARG28 PRO29 VAL30 ARG31 TYR32 VAL33 VAL34 VAL35 SER36 HIS37 THR38 ALA39 GLY40 SER41 HIS42 CYS43 ASP44 THR45 PRO46 ALA47 SER48 CYS49 ALA50 GLN51 GLN52 ALA53 GLN54 ASN55 VAL56 GLN57 SER58 TYR59 HIS60 VAL61 ARG62 ASN63 LEU64 GLY65 TRP66 CYS67 ASP68 VAL69 GLY70 TYR71 ASN72 PHE73 LEU74 ILE75 GLY76 GLU77 ASP78 GLY79 LEU80 VAL81 TYR82 GLU83 GLY84 ARG85 GLY86 TRP87 ASN88 ILE89 LYS90 GLY91 ALA92 HIS93 ALA94 GLY95 PRO96 THR97 TRP98 ASN99 PRO100 ILE101 SER102 ILE103 GLY104 ILE105 SER106 PHE107 MET108 GLY109 ASN110 TYR111 MET112 ASN113 ARG114 VAL115 PRO116 PRO117 PRO118 ARG119 ALA120 LEU121 ARG122 ALA123 ALA124 GLN125 ASN126 LEU127 LEU128 ALA129 CYS130 GLY131 VAL132 ALA133 LEU134 GLY135 ALA136 LEU137 ARG138 SER139 ASN140 TYR141 GLU142 VAL143 LYS144 GLY145 HIS146 ARG147 ASP148 VAL149 GLN150 PRO151 THR152 LEU153 SER154 PRO155 GLY156 ASP157 ARG158 LEU159 TYR160 GLU161 ILE162 ILE163 GLN164 THR165 TRP166 SER167 HIS168 TYR169 ARG170 ALA171 |
Unit 5 | GLC1 GLC2 |
Unit 6 | GLC1 GLC2 |
Unit 7 | TLA172 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |