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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SEC4 IN COMPLEX WITH RAB-GDI
Keywords RAB GTPASE, PRENYLATION, VESICULAR TRANSPORT, CYTOPLASM, CYTOPLASMIC VESICLE, EXOCYTOSIS, GTP-BINDING, LIPOPROTEIN, MEMBRANE, NUCLEOTIDE-BINDING, PALMITATE, PHOSPHOPROTEIN, PROTEIN TRANSPORT, GTPASE ACTIVATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3CPH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAB GDP-DISSOCIATION INHIBITOR  G 441 3519 0
2  Protein   RAS-RELATED PROTEIN SEC4  A 175 1379 0
3  Protein   RAB GDP-DISSOCIATION INHIBITOR  H 436 3475 0
4  Ligand   RAS-RELATED PROTEIN SEC4  A 2 0 29
5 Water     87 0 87
total       1141 8373 116
Proteins
Unit 1 THR5 ILE6 ASP7 THR8 ASP9 TYR10 ASP11 VAL12 ILE13 VAL14 LEU15 GLY16 THR17 GLY18 ILE19 THR20 GLU21 CYS22 ILE23 LEU24 SER25 GLY26 LEU27 LEU28 SER29 VAL30 ASP31 GLY32 LYS33 LYS34 VAL35 LEU36 HIS37 ILE38 ASP39 LYS40 GLN41 ASP42 HIS43 TYR44 GLY45 GLY46 GLU47 ALA48 ALA49 SER50 VAL51 THR52 LEU53 SER54 GLN55 LEU56 TYR57 GLU58 LYS59 PHE60 LYS61 GLN62 ASN63 PRO64 ILE65 SER66 LYS67 GLU68 GLU69 ARG70 GLU71 SER72 LYS73 PHE74 GLY75 LYS76 ASP77 ARG78 ASP79 TRP80 ASN81 VAL82 ASP83 LEU84 ILE85 PRO86 LYS87 PHE88 LEU89 MET90 ALA91 ASN92 GLY93 GLU94 LEU95 THR96 ASN97 ILE98 LEU99 ILE100 HIS101 THR102 ASP103 VAL104 THR105 ARG106 TYR107 VAL108 ASP109 PHE110 LYS111 GLN112 VAL113 SER114 GLY115 SER116 TYR117 VAL118 PHE119 LYS120 GLN121 GLY122 LYS123 ILE124 TYR125 LYS126 VAL127 PRO128 ALA129 ASN130 GLU131 ILE132 GLU133 ALA134 ILE135 SER136 SER137 PRO138 LEU139 MET140 GLY141 ILE142 PHE143 GLU144 LYS145 ARG146 ARG147 MET148 LYS149 LYS150 PHE151 LEU152 GLU153 TRP154 ILE155 SER156 SER157 TYR158 LYS159 GLU160 ASP161 ASP162 LEU163 SER164 THR165 HIS166 GLN167 GLY168 LEU169 ASP170 LEU171 ASP172 LYS173 ASN174 THR175 MET176 ASP177 GLU178 VAL179 TYR180 TYR181 LYS182 PHE183 GLY184 LEU185 GLY186 ASN187 SER188 THR189 LYS190 GLU191 PHE192 ILE193 GLY194 HIS195 ALA196 MET197 ALA198 LEU199 TRP200 THR201 ASN202 ASP203 ASP204 TYR205 LEU206 GLN207 GLN208 PRO209 ALA210 ARG211 PRO212 SER213 PHE214 GLU215 ARG216 ILE217 LEU218 LEU219 TYR220 CYS221 GLN222 SER223 VAL224 ALA225 ARG226 TYR227 GLY228 LYS229 SER230 PRO231 TYR232 LEU233 TYR234 PRO235 MET236 TYR237 GLY238 LEU239 GLY240 GLU241 LEU242 PRO243 GLN244 GLY245 PHE246 ALA247 ARG248 LEU249 SER250 ALA251 ILE252 TYR253 GLY254 GLY255 THR256 TYR257 MET258 LEU259 ASP260 THR261 PRO262 ILE263 ASP264 GLU265 VAL266 LEU267 TYR268 LYS269 LYS270 ASP271 THR272 GLY273 LYS274 PHE275 GLU276 GLY277 VAL278 LYS279 THR280 LYS281 LEU282 GLY283 THR284 PHE285 LYS286 ALA287 PRO288 LEU289 VAL290 ILE291 ALA292 ASP293 PRO294 THR295 TYR296 PHE297 PRO298 GLU299 LYS300 CYS301 LYS302 SER303 THR304 GLY305 GLN306 ARG307 VAL308 ILE309 ARG310 ALA311 ILE312 CYS313 ILE314 LEU315 ASN316 HIS317 PRO318 VAL319 PRO320 ASN321 THR322 SER323 ASN324 ALA325 ASP326 SER327 LEU328 GLN329 ILE330 ILE331 ILE332 PRO333 GLN334 SER335 GLN336 LEU337 GLY338 ARG339 LYS340 SER341 ASP342 ILE343 TYR344 VAL345 ALA346 ILE347 VAL348 SER349 ASP350 ALA351 HIS352 ASN353 VAL354 CYS355 SER356 LYS357 GLY358 HIS359 TYR360 LEU361 ALA362 ILE363 ILE364 SER365 THR366 ILE367 ILE368 GLU369 THR370 ASP371 LYS372 PRO373 HIS374 ILE375 GLU376 LEU377 GLU378 PRO379 ALA380 PHE381 LYS382 LEU383 LEU384 GLY385 PRO386 ILE387 GLU388 GLU389 LYS390 PHE391 MET392 GLY393 ILE394 ALA395 GLU396 LEU397 PHE398 GLU399 PRO400 ARG401 GLU402 ASP403 GLY404 SER405 LYS406 ASP407 ASN408 ILE409 TYR410 LEU411 SER412 ARG413 SER414 TYR415 ASP416 ALA417 SER418 SER419 HIS420 PHE421 GLU422 SER423 MET424 THR425 ASP426 ASP427 VAL428 LYS429 ASP430 ILE431 TYR432 PHE433 ARG434 VAL435 THR436 GLY437 HIS438 PRO439 LEU440 VAL441 LEU442 LYS443 GLN444 ARG445
Unit 2 ILE20 MET21 LYS22 ILE23 LEU24 LEU25 ILE26 GLY27 ASP28 SER29 GLY30 VAL31 GLY32 LYS33 SER34 CYS35 LEU36 LEU37 VAL38 ARG39 PHE40 VAL41 GLU42 ASP43 LYS44 PHE45 ASN46 PRO47 SER48 PHE49 ILE50 THR51 THR52 ILE53 GLY54 ILE55 ASP56 PHE57 LYS58 ILE59 LYS60 THR61 VAL62 ASP63 ILE64 ASN65 GLY66 LYS67 LYS68 VAL69 LYS70 LEU71 GLN72 LEU73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 PHE82 ARG83 THR84 ILE85 THR86 THR87 ALA88 TYR89 TYR90 ARG91 GLY92 ALA93 MET94 GLY95 ILE96 ILE97 LEU98 VAL99 TYR100 ASP101 VAL102 THR103 ASP104 GLU105 ARG106 THR107 PHE108 THR109 ASN110 ILE111 LYS112 GLN113 TRP114 PHE115 LYS116 THR117 VAL118 ASN119 GLU120 HIS121 ALA122 ASN123 ASP124 GLU125 ALA126 GLN127 LEU128 LEU129 LEU130 VAL131 GLY132 ASN133 LYS134 SER135 ASP136 MET137 GLU138 THR139 ARG140 VAL141 VAL142 THR143 ALA144 ASP145 GLN146 GLY147 GLU148 ALA149 LEU150 ALA151 LYS152 GLU153 LEU154 GLY155 ILE156 PRO157 PHE158 ILE159 GLU160 SER161 SER162 ALA163 LYS164 ASN165 ASP166 ASP167 ASN168 VAL169 ASN170 GLU171 ILE172 PHE173 PHE174 THR175 LEU176 ALA177 LYS178 LEU179 ILE180 GLN181 GLU182 LYS183 ILE184 ASP185 SER186 ASN187 LYS188 LEU189 VAL190 GLY191 VAL192 GLY193 ASN194
Unit 3 ASP7 THR8 ASP9 TYR10 ASP11 VAL12 ILE13 VAL14 LEU15 GLY16 THR17 GLY18 ILE19 THR20 GLU21 CYS22 ILE23 LEU24 SER25 GLY26 LEU27 LEU28 SER29 VAL30 ASP31 GLY32 LYS33 LYS34 VAL35 LEU36 HIS37 ILE38 ASP39 LYS40 GLN41 ASP42 HIS43 TYR44 GLY45 GLY46 GLU47 ALA48 ALA49 SER50 VAL51 THR52 LEU53 SER54 GLN55 LEU56 TYR57 GLU58 LYS59 PHE60 LYS61 GLN62 ASN63 PRO64 ILE65 SER66 LYS67 GLU68 GLU69 ARG70 GLU71 SER72 LYS73 PHE74 GLY75 LYS76 ASP77 ARG78 ASP79 TRP80 ASN81 VAL82 ASP83 LEU84 ILE85 PRO86 LYS87 PHE88 LEU89 MET90 ALA91 ASN92 GLY93 GLU94 LEU95 THR96 ASN97 ILE98 LEU99 ILE100 HIS101 THR102 ASP103 VAL104 THR105 ARG106 TYR107 VAL108 ASP109 PHE110 LYS111 GLN112 VAL113 SER114 GLY115 SER116 TYR117 VAL118 PHE119 LYS120 GLN121 GLY122 LYS123 ILE124 TYR125 LYS126 VAL127 PRO128 ALA129 ASN130 GLU131 ILE132 GLU133 ALA134 ILE135 SER136 SER137 PRO138 LEU139 MET140 GLY141 ILE142 PHE143 GLU144 LYS145 ARG146 ARG147 MET148 LYS149 LYS150 PHE151 LEU152 GLU153 TRP154 ILE155 SER156 SER157 TYR158 LYS159 GLU160 ASP161 ASP162 LEU163 SER164 THR165 HIS166 GLN167 GLY168 LEU169 ASP170 LEU171 ASP172 LYS173 ASN174 THR175 MET176 ASP177 GLU178 VAL179 TYR180 TYR181 LYS182 PHE183 GLY184 LEU185 GLY186 ASN187 SER188 THR189 LYS190 GLU191 PHE192 ILE193 GLY194 HIS195 ALA196 MET197 ALA198 LEU199 TRP200 THR201 ASN202 ASP203 ASP204 TYR205 LEU206 GLN207 GLN208 PRO209 ALA210 ARG211 PRO212 SER213 PHE214 GLU215 ARG216 ILE217 LEU218 LEU219 TYR220 CYS221 GLN222 SER223 VAL224 ALA225 ARG226 TYR227 GLY228 LYS229 SER230 PRO231 TYR232 LEU233 TYR234 PRO235 MET236 TYR237 GLY238 LEU239 GLY240 GLU241 LEU242 PRO243 GLN244 GLY245 PHE246 ALA247 ARG248 LEU249 SER250 ALA251 ILE252 TYR253 GLY254 GLY255 THR256 TYR257 MET258 LEU259 ASP260 THR261 PRO262 ILE263 ASP264 GLU265 VAL266 LEU267 TYR268 LYS269 LYS270 ASP271 THR272 GLY273 LYS274 PHE275 GLU276 GLY277 VAL278 LYS279 THR280 LYS281 LEU282 GLY283 THR284 PHE285 LYS286 ALA287 PRO288 LEU289 VAL290 ILE291 ALA292 ASP293 PRO294 THR295 TYR296 PHE297 PRO298 GLU299 LYS300 CYS301 LYS302 SER303 THR304 GLY305 GLN306 ARG307 VAL308 ILE309 ARG310 ALA311 ILE312 CYS313 ILE314 LEU315 ASN316 HIS317 PRO318 VAL319 PRO320 ASN321 THR322 SER323 ASN324 ALA325 ASP326 SER327 LEU328 GLN329 ILE330 ILE331 ILE332 PRO333 GLN334 SER335 GLN336 LEU337 GLY338 ARG339 LYS340 SER341 ASP342 ILE343 TYR344 VAL345 ALA346 ILE347 VAL348 SER349 ASP350 ALA351 HIS352 ASN353 VAL354 CYS355 SER356 LYS357 GLY358 HIS359 TYR360 LEU361 ALA362 ILE363 ILE364 SER365 THR366 ILE367 ILE368 GLU369 THR370 ASP371 LYS372 PRO373 HIS374 ILE375 GLU376 LEU377 GLU378 PRO379 ALA380 PHE381 LYS382 LEU383 LEU384 GLY385 PRO386 ILE387 GLU388 GLU389 LYS390 PHE391 MET392 GLY393 ILE394 ALA395 GLU396 LEU397 PHE398 GLU399 PRO400 ARG401 GLU402 ASP403 GLY404 SER405 LYS406 ASP407 ASN408 ILE409 TYR410 LEU411 SER412 ARG413 SER414 TYR415 ASP416 ALA417 SER418 SER419 HIS420 PHE421 GLU422 SER423 MET424 THR425 ASP426 ASP427 VAL428 LYS429 ASP430 ILE431 TYR432 PHE433 ARG434 VAL435 THR436 GLY437 HIS438 PRO439 LEU440 VAL441 LEU442
Ligands
Unit 4 MG301 GDP302
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany