3CMD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM VRE-E.FAECIUM
• Keywords: PDF, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3CMD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PEPTIDE DEFORMYLASE	A	186	1460	0
2	Protein	PEPTIDE DEFORMYLASE	B	188	1470	0
3	Ligand	PEPTIDE DEFORMYLASE	A	6	0	24
4	Ligand	PEPTIDE DEFORMYLASE	B	8	0	14
5	Water			207	0	207
total				595	2930	245

Proteins

Unit 1

LEU -6 VAL -5 PRO -4 GLY -3 ARG -2 HIS -1 MET 0 MET 1 ILE 2 THR 3 MET 4 ASP 5 ASP 6 ILE 7 ILE 8 ARG 9 GLU 10 GLY 11 ASN 12 PRO 13 THR 14 LEU 15 ARG 16 GLU 17 VAL 18 ALA 19 LYS 20 GLU 21 VAL 22 SER 23 LEU 24 PRO 25 LEU 26 SER 27 GLU 28 GLU 29 ASP 30 ILE 31 SER 32 LEU 33 GLY 34 LYS 35 GLU 36 MET 37 LEU 38 GLU 39 PHE 40 LEU 41 LYS 42 ASN 43 SER 44 GLN 45 ASP 46 PRO 47 ILE 48 LYS 49 ALA 50 GLU 51 GLU 52 LEU 53 HIS 54 LEU 55 ARG 56 GLY 57 GLY 58 VAL 59 GLY 60 LEU 61 ALA 62 ALA 63 PRO 64 GLN 65 LEU 66 ASP 67 ILE 68 SER 69 LYS 70 ARG 71 ILE 72 ILE 73 ALA 74 VAL 75 HIS 76 VAL 77 PRO 78 SER 79 SER 88 LEU 89 SER 90 THR 91 VAL 92 MET 93 TYR 94 ASN 95 PRO 96 LYS 97 ILE 98 LEU 99 SER 100 HIS 101 SER 102 VAL 103 GLN 104 ASP 105 ALA 106 CYS 107 LEU 108 GLY 109 GLU 110 GLY 111 GLU 112 GLY 113 CYS 114 LEU 115 SER 116 VAL 117 ASP 118 ARG 119 GLU 120 VAL 121 PRO 122 GLY 123 TYR 124 VAL 125 VAL 126 ARG 127 HIS 128 ALA 129 LYS 130 ILE 131 THR 132 VAL 133 SER 134 TYR 135 TYR 136 ASP 137 MET 138 ASN 139 GLY 140 GLU 141 LYS 142 HIS 143 LYS 144 ILE 145 ARG 146 LEU 147 LYS 148 ASN 149 TYR 150 GLU 151 SER 152 ILE 153 VAL 154 VAL 155 GLN 156 HIS 157 GLU 158 ILE 159 ASP 160 HIS 161 ILE 162 ASN 163 GLY 164 VAL 165 MET 166 PHE 167 TYR 168 ASP 169 HIS 170 ILE 171 ASN 172 ASP 173 GLN 174 ASN 175 PRO 176 PHE 177 ALA 178 LEU 179 LYS 180 GLU 181 GLY 182 VAL 183 LEU 184 VAL 185 ILE 186 GLU 187

Unit 2

SER -8 GLY -7 LEU -6 VAL -5 PRO -4 GLY -3 ARG -2 HIS -1 MET 0 MET 1 ILE 2 THR 3 MET 4 ASP 5 ASP 6 ILE 7 ILE 8 ARG 9 GLU 10 GLY 11 ASN 12 PRO 13 THR 14 LEU 15 ARG 16 GLU 17 VAL 18 ALA 19 LYS 20 GLU 21 VAL 22 SER 23 LEU 24 PRO 25 LEU 26 SER 27 GLU 28 GLU 29 ASP 30 ILE 31 SER 32 LEU 33 GLY 34 LYS 35 GLU 36 MET 37 LEU 38 GLU 39 PHE 40 LEU 41 LYS 42 ASN 43 SER 44 GLN 45 ASP 46 PRO 47 ILE 48 LYS 49 ALA 50 GLU 51 GLU 52 LEU 53 HIS 54 LEU 55 ARG 56 GLY 57 GLY 58 VAL 59 GLY 60 LEU 61 ALA 62 ALA 63 PRO 64 GLN 65 LEU 66 ASP 67 ILE 68 SER 69 LYS 70 ARG 71 ILE 72 ILE 73 ALA 74 VAL 75 HIS 76 VAL 77 PRO 78 SER 79 SER 88 LEU 89 SER 90 THR 91 VAL 92 MET 93 TYR 94 ASN 95 PRO 96 LYS 97 ILE 98 LEU 99 SER 100 HIS 101 SER 102 VAL 103 GLN 104 ASP 105 ALA 106 CYS 107 LEU 108 GLY 109 GLU 110 GLY 111 GLU 112 GLY 113 CYS 114 LEU 115 SER 116 VAL 117 ASP 118 ARG 119 GLU 120 VAL 121 PRO 122 GLY 123 TYR 124 VAL 125 VAL 126 ARG 127 HIS 128 ALA 129 LYS 130 ILE 131 THR 132 VAL 133 SER 134 TYR 135 TYR 136 ASP 137 MET 138 ASN 139 GLY 140 GLU 141 LYS 142 HIS 143 LYS 144 ILE 145 ARG 146 LEU 147 LYS 148 ASN 149 TYR 150 GLU 151 SER 152 ILE 153 VAL 154 VAL 155 GLN 156 HIS 157 GLU 158 ILE 159 ASP 160 HIS 161 ILE 162 ASN 163 GLY 164 VAL 165 MET 166 PHE 167 TYR 168 ASP 169 HIS 170 ILE 171 ASN 172 ASP 173 GLN 174 ASN 175 PRO 176 PHE 177 ALA 178 LEU 179 LYS 180 GLU 181 GLY 182 VAL 183 LEU 184 VAL 185 ILE 186 GLU 187

Ligands

Unit 3	FE 188 NA 189 NA 190 MLI 191 MLI 192 MLI 193
Unit 4	FE 188 NA 189 NA 190 NA 191 NA 192 NA 193 NA 194 MLI 195