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| Title | THE SET AND RING ASSOCIATED (SRA) DOMAIN OF UHRF1 BOUND TO METHYLATED DNA | |
| Keywords | CELL CYCLE, DNA DAMAGE, DNA REPAIR, DNA-BINDING, BASE FLIPPING, LIGASE, METAL BINDING, NUCLEASE, DNA REPLICATION, TRANSCRIPTIONAL SILENCING, CHROMATIN, PHOSPHORYLATION, TRANSCRIPTION, TRANSCRIPTION REGULATION, UBL CONJUGATION, UBL CONJUGATION PATHWAY, ZINC, ZINC-FINGER, STRUCTURAL GENOMICS CONSORTIUM, SGC, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 3CLZ | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | E3 UBIQUITIN-PROTEIN LIGASE UHRF1 | A | 204 | 1598 | 0 |
| 2 | Protein | E3 UBIQUITIN-PROTEIN LIGASE UHRF1 | B | 210 | 1635 | 0 |
| 3 | Protein | E3 UBIQUITIN-PROTEIN LIGASE UHRF1 | C | 204 | 1588 | 0 |
| 4 | Protein | E3 UBIQUITIN-PROTEIN LIGASE UHRF1 | D | 209 | 1638 | 0 |
| 5 | Other macromolecule | 5'-D(*DGP*DGP*DGP*DCP*DCP*(5CM) P*DGP*DCP*DAP*DGP*DGP*DG)-3' | E | 12 | 229 | 20 |
| 6 | Other macromolecule | 5'- D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DGP*DGP*DCP*DCP*DC)-3' | F | 12 | 238 | 0 |
| 7 | Other macromolecule | 5'-D(*DGP*DGP*DGP*DCP*DCP*(5CM) P*DGP*DCP*DAP*DGP*DGP*DG)-3' | G | 12 | 229 | 20 |
| 8 | Other macromolecule | 5'- D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DGP*DGP*DCP*DCP*DC)-3' | H | 12 | 238 | 0 |
| 9 | Other macromolecule | 5'-D(*DGP*DGP*DGP*DCP*DCP*(5CM) P*DGP*DCP*DAP*DGP*DGP*DG)-3' | I | 12 | 229 | 20 |
| 10 | Other macromolecule | 5'- D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DGP*DGP*DCP*DCP*DC)-3' | J | 12 | 238 | 0 |
| 11 | Other macromolecule | 5'-D(*DGP*DGP*DGP*DCP*DCP*(5CM) P*DGP*DCP*DAP*DGP*DGP*DG)-3' | K | 12 | 229 | 20 |
| 12 | Other macromolecule | 5'- D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DGP*DGP*DCP*DCP*DC)-3' | L | 12 | 238 | 0 |
| 13 | Water | 640 | 0 | 640 | ||
| total | 1563 | 8327 | 720 |
| Unit 1 | ASN416 HIS417 TYR418 GLY419 PRO420 ILE421 PRO422 GLY423 ILE424 PRO425 VAL426 GLY427 THR428 MET429 TRP430 ARG431 PHE432 ARG433 VAL434 GLN435 VAL436 SER437 GLU438 SER439 GLY440 VAL441 HIS442 ARG443 PRO444 HIS445 VAL446 ALA447 GLY448 ILE449 HIS450 GLY451 ARG452 SER453 ASN454 ASP455 GLY456 ALA457 TYR458 SER459 LEU460 VAL461 LEU462 ALA463 GLY464 GLY465 TYR466 GLU467 ASP468 ASP469 VAL470 ASP471 HIS472 GLY473 ASN474 PHE475 PHE476 THR477 TYR478 THR479 GLY480 SER481 GLY482 GLY483 ARG484 ASP485 LEU486 SER487 GLY488 ASN489 LYS490 ARG491 THR492 ALA493 GLU494 GLN495 SER496 CYS497 ASP498 GLN499 LYS500 LEU501 THR502 ASN503 THR504 ASN505 ARG506 ALA507 LEU508 ALA509 LEU510 ASN511 CYS512 PHE513 ALA514 PRO515 ILE516 ASN517 ASP518 GLN519 GLU520 GLY521 ALA522 GLU523 ALA524 LYS525 ASP526 TRP527 ARG528 SER529 GLY530 LYS531 PRO532 VAL533 ARG534 VAL535 VAL536 ARG537 ASN538 VAL539 LYS540 GLY541 GLY542 LYS543 ASN544 SER545 LYS546 TYR547 ALA548 PRO549 ALA550 GLU551 GLY552 ASN553 ARG554 TYR555 ASP556 GLY557 ILE558 TYR559 LYS560 VAL561 VAL562 LYS563 TYR564 TRP565 PRO566 GLU567 LYS568 GLY569 LYS570 SER571 GLY572 PHE573 LEU574 VAL575 TRP576 ARG577 TYR578 LEU579 LEU580 ARG581 ARG582 ASP583 ASP584 ASP585 GLU586 PRO587 GLY588 PRO589 TRP590 THR591 LYS592 GLU593 GLY594 LYS595 ASP596 ARG597 ILE598 LYS599 LYS600 LEU601 GLY602 LEU603 THR604 MET605 GLN606 TYR607 PRO608 GLU609 GLY610 TYR611 LEU612 GLU613 ALA614 LEU615 ALA616 ASN617 ALA618 HIS619 |
| Unit 2 | SER415 ASN416 HIS417 TYR418 GLY419 PRO420 ILE421 PRO422 GLY423 ILE424 PRO425 VAL426 GLY427 THR428 MET429 TRP430 ARG431 PHE432 ARG433 VAL434 GLN435 VAL436 SER437 GLU438 SER439 GLY440 VAL441 HIS442 ARG443 PRO444 HIS445 VAL446 ALA447 GLY448 ILE449 HIS450 GLY451 ARG452 SER453 ASN454 ASP455 GLY456 ALA457 TYR458 SER459 LEU460 VAL461 LEU462 ALA463 GLY464 GLY465 TYR466 GLU467 ASP468 ASP469 VAL470 ASP471 HIS472 GLY473 ASN474 PHE475 PHE476 THR477 TYR478 THR479 GLY480 SER481 GLY482 GLY483 ARG484 ASP485 LEU486 SER487 GLY488 ASN489 LYS490 ARG491 THR492 ALA493 GLU494 GLN495 SER496 CYS497 ASP498 GLN499 LYS500 LEU501 THR502 ASN503 THR504 ASN505 ARG506 ALA507 LEU508 ALA509 LEU510 ASN511 CYS512 PHE513 ALA514 PRO515 ILE516 ASN517 ASP518 GLN519 GLU520 GLY521 ALA522 GLU523 ALA524 LYS525 ASP526 TRP527 ARG528 SER529 GLY530 LYS531 PRO532 VAL533 ARG534 VAL535 VAL536 ARG537 ASN538 VAL539 LYS540 GLY541 GLY542 LYS543 ASN544 SER545 LYS546 TYR547 ALA548 PRO549 ALA550 GLU551 GLY552 ASN553 ARG554 TYR555 ASP556 GLY557 ILE558 TYR559 LYS560 VAL561 VAL562 LYS563 TYR564 TRP565 PRO566 GLU567 LYS568 GLY569 LYS570 SER571 GLY572 PHE573 LEU574 VAL575 TRP576 ARG577 TYR578 LEU579 LEU580 ARG581 ARG582 ASP583 ASP584 ASP585 GLU586 PRO587 GLY588 PRO589 TRP590 THR591 LYS592 GLU593 GLY594 LYS595 ASP596 ARG597 ILE598 LYS599 LYS600 LEU601 GLY602 LEU603 THR604 MET605 GLN606 TYR607 PRO608 GLU609 GLY610 TYR611 LEU612 GLU613 ALA614 LEU615 ALA616 ASN617 ALA618 HIS619 HIS620 HIS621 HIS622 HIS623 HIS624 |
| Unit 3 | ASN416 HIS417 TYR418 GLY419 PRO420 ILE421 PRO422 GLY423 ILE424 PRO425 VAL426 GLY427 THR428 MET429 TRP430 ARG431 PHE432 ARG433 VAL434 GLN435 VAL436 SER437 GLU438 SER439 GLY440 VAL441 HIS442 ARG443 PRO444 HIS445 VAL446 ALA447 GLY448 ILE449 HIS450 GLY451 ARG452 SER453 ASN454 ASP455 GLY456 ALA457 TYR458 SER459 LEU460 VAL461 LEU462 ALA463 GLY464 GLY465 TYR466 GLU467 ASP468 ASP469 VAL470 ASP471 HIS472 GLY473 ASN474 PHE475 PHE476 THR477 TYR478 THR479 GLY480 SER481 GLY482 GLY483 ARG484 ASP485 LEU486 SER487 GLY488 ASN489 LYS490 ARG491 THR492 ALA493 GLU494 GLN495 SER496 CYS497 ASP498 GLN499 LYS500 LEU501 THR502 ASN503 THR504 ASN505 ARG506 ALA507 LEU508 ALA509 LEU510 ASN511 CYS512 PHE513 ALA514 PRO515 ILE516 ASN517 ASP518 GLN519 GLU520 GLY521 ALA522 GLU523 ALA524 LYS525 ASP526 TRP527 ARG528 SER529 GLY530 LYS531 PRO532 VAL533 ARG534 VAL535 VAL536 ARG537 ASN538 VAL539 LYS540 GLY541 GLY542 LYS543 ASN544 SER545 LYS546 TYR547 ALA548 PRO549 ALA550 GLU551 GLY552 ASN553 ARG554 TYR555 ASP556 GLY557 ILE558 TYR559 LYS560 VAL561 VAL562 LYS563 TYR564 TRP565 PRO566 GLU567 LYS568 GLY569 LYS570 SER571 GLY572 PHE573 LEU574 VAL575 TRP576 ARG577 TYR578 LEU579 LEU580 ARG581 ARG582 ASP583 ASP584 ASP585 GLU586 PRO587 GLY588 PRO589 TRP590 THR591 LYS592 GLU593 GLY594 LYS595 ASP596 ARG597 ILE598 LYS599 LYS600 LEU601 GLY602 LEU603 THR604 MET605 GLN606 TYR607 PRO608 GLU609 GLY610 TYR611 LEU612 GLU613 ALA614 LEU615 ALA616 ASN617 ALA618 HIS619 |
| Unit 4 | ASN416 HIS417 TYR418 GLY419 PRO420 ILE421 PRO422 GLY423 ILE424 PRO425 VAL426 GLY427 THR428 MET429 TRP430 ARG431 PHE432 ARG433 VAL434 GLN435 VAL436 SER437 GLU438 SER439 GLY440 VAL441 HIS442 ARG443 PRO444 HIS445 VAL446 ALA447 GLY448 ILE449 HIS450 GLY451 ARG452 SER453 ASN454 ASP455 GLY456 ALA457 TYR458 SER459 LEU460 VAL461 LEU462 ALA463 GLY464 GLY465 TYR466 GLU467 ASP468 ASP469 VAL470 ASP471 HIS472 GLY473 ASN474 PHE475 PHE476 THR477 TYR478 THR479 GLY480 SER481 GLY482 GLY483 ARG484 ASP485 LEU486 SER487 GLY488 ASN489 LYS490 ARG491 THR492 ALA493 GLU494 GLN495 SER496 CYS497 ASP498 GLN499 LYS500 LEU501 THR502 ASN503 THR504 ASN505 ARG506 ALA507 LEU508 ALA509 LEU510 ASN511 CYS512 PHE513 ALA514 PRO515 ILE516 ASN517 ASP518 GLN519 GLU520 GLY521 ALA522 GLU523 ALA524 LYS525 ASP526 TRP527 ARG528 SER529 GLY530 LYS531 PRO532 VAL533 ARG534 VAL535 VAL536 ARG537 ASN538 VAL539 LYS540 GLY541 GLY542 LYS543 ASN544 SER545 LYS546 TYR547 ALA548 PRO549 ALA550 GLU551 GLY552 ASN553 ARG554 TYR555 ASP556 GLY557 ILE558 TYR559 LYS560 VAL561 VAL562 LYS563 TYR564 TRP565 PRO566 GLU567 LYS568 GLY569 LYS570 SER571 GLY572 PHE573 LEU574 VAL575 TRP576 ARG577 TYR578 LEU579 LEU580 ARG581 ARG582 ASP583 ASP584 ASP585 GLU586 PRO587 GLY588 PRO589 TRP590 THR591 LYS592 GLU593 GLY594 LYS595 ASP596 ARG597 ILE598 LYS599 LYS600 LEU601 GLY602 LEU603 THR604 MET605 GLN606 TYR607 PRO608 GLU609 GLY610 TYR611 LEU612 GLU613 ALA614 LEU615 ALA616 ASN617 ALA618 HIS619 HIS620 HIS621 HIS622 HIS623 HIS624 |
| Unit 5 | DG1 DG2 DG3 DC4 DC5 5CM6 DG7 DC8 DA9 DG10 DG11 DG12 |
| Unit 6 | DC1 DC2 DC3 DT4 DG5 DC6 DG7 DG8 DG9 DC10 DC11 DC12 |
| Unit 7 | DG1 DG2 DG3 DC4 DC5 5CM6 DG7 DC8 DA9 DG10 DG11 DG12 |
| Unit 8 | DC1 DC2 DC3 DT4 DG5 DC6 DG7 DG8 DG9 DC10 DC11 DC12 |
| Unit 9 | DG1 DG2 DG3 DC4 DC5 5CM6 DG7 DC8 DA9 DG10 DG11 DG12 |
| Unit 10 | DC1 DC2 DC3 DT4 DG5 DC6 DG7 DG8 DG9 DC10 DC11 DC12 |
| Unit 11 | DG1 DG2 DG3 DC4 DC5 5CM6 DG7 DC8 DA9 DG10 DG11 DG12 |
| Unit 12 | DC1 DC2 DC3 DT4 DG5 DC6 DG7 DG8 DG9 DC10 DC11 DC12 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |