3CJI - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF SENECA VALLEY VIRUS-001
• Keywords: VIRUS CAPSID PROTEIN STRUCTURE, ATP-BINDING, CYTOPLASM, CYTOPLASMIC VESICLE, HELICASE, HYDROLASE, MEMBRANE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, PHOSPHOPROTEIN, PROTEASE, RNA REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, VIRION, ICOSAHEDRAL VIRUS, VIRUS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3CJI	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	POLYPROTEIN	A	258	2015	0
2	Protein	POLYPROTEIN	B	238	1855	0
3	Protein	POLYPROTEIN	C	268	2105	0
4	Protein	POLYPROTEIN	D	35	278	0
5	Ligand	POLYPROTEIN	B	1	0	1
6	Water			267	0	267
total				1067	6253	268

Proteins

Unit 1	SER 1 THR 2 ASP 3 ASN 4 ALA 5 GLU 6 THR 7 GLY 8 VAL 9 ILE 10 GLU 11 ALA 12 GLY 13 ASN 14 THR 15 ASP 16 THR 17 ASP 18 PHE 19 SER 20 GLY 21 GLU 22 LEU 23 ALA 24 ALA 25 PRO 26 GLY 27 SER 28 ASN 29 HIS 30 THR 31 ASN 32 VAL 33 LYS 34 PHE 35 LEU 36 PHE 37 ASP 38 ARG 39 SER 40 ARG 41 LEU 42 LEU 43 ASN 44 VAL 45 ILE 46 LYS 47 VAL 48 LEU 49 GLU 50 LYS 51 ASP 52 ALA 53 VAL 54 PHE 55 PRO 56 ARG 57 PRO 58 PHE 59 PRO 60 THR 61 GLN 62 GLU 63 GLY 64 ALA 65 GLN 66 GLN 67 ASP 68 ASP 69 GLY 70 TYR 71 PHE 72 CYS 73 LEU 74 LEU 75 THR 76 PRO 77 ARG 78 PRO 79 THR 80 VAL 81 ALA 82 SER 83 ARG 84 PRO 85 ALA 86 THR 87 ARG 88 PHE 89 GLY 90 LEU 91 TYR 92 ALA 93 ASN 94 PRO 95 SER 96 GLY 97 SER 98 GLY 99 VAL 100 LEU 101 ALA 102 ASN 103 THR 104 SER 105 LEU 106 ASP 107 PHE 108 ASN 109 PHE 110 TYR 111 SER 112 LEU 113 ALA 114 CYS 115 PHE 116 THR 117 TYR 118 PHE 119 ARG 120 SER 121 ASP 122 LEU 123 GLU 124 VAL 125 THR 126 VAL 127 VAL 128 SER 129 LEU 130 GLU 131 PRO 132 ASP 133 LEU 134 GLU 135 PHE 136 ALA 137 VAL 138 GLY 139 TRP 140 PHE 141 PRO 142 SER 143 GLY 144 SER 145 GLU 146 TYR 147 GLN 148 ALA 149 SER 150 SER 151 PHE 152 VAL 153 TYR 154 ASP 155 GLN 156 LEU 157 HIS 158 VAL 159 PRO 160 PHE 161 HIS 162 PHE 163 THR 164 GLY 165 ARG 166 THR 167 PRO 168 ARG 169 ALA 170 PHE 171 ALA 172 SER 173 LYS 174 GLY 175 GLY 176 LYS 177 VAL 178 SER 179 PHE 180 VAL 181 LEU 182 PRO 183 TRP 184 ASN 185 SER 186 VAL 187 SER 188 SER 189 VAL 190 LEU 191 PRO 192 VAL 193 ARG 194 TRP 195 GLY 196 GLY 197 ALA 198 SER 199 LYS 200 LEU 201 SER 202 SER 203 ALA 204 THR 205 ARG 206 GLY 207 LEU 208 PRO 209 ALA 210 HIS 211 ALA 212 ASP 213 TRP 214 GLY 215 THR 216 ILE 217 TYR 218 ALA 219 PHE 220 VAL 221 PRO 222 ARG 223 PRO 224 ASN 225 GLU 226 LYS 227 LYS 228 SER 229 THR 230 ALA 231 VAL 232 LYS 233 HIS 234 VAL 235 ALA 236 VAL 237 TYR 238 ILE 239 ARG 240 TYR 241 LYS 242 ASN 243 ALA 244 ARG 245 ALA 246 TRP 247 CYS 248 PRO 249 SER 250 MET 251 LEU 252 PRO 253 PHE 254 ARG 255 SER 256 TYR 257 LYS 258
Unit 2	GLY 1 PRO 2 ILE 3 PRO 4 THR 5 ALA 6 PRO 7 ARG 8 GLU 9 ASN 10 SER 11 LEU 12 MET 13 PHE 14 LEU 15 SER 16 THR 17 LEU 18 PRO 19 ASP 20 ASP 21 THR 22 VAL 23 PRO 24 ALA 25 TYR 26 GLY 27 ASN 28 VAL 29 ARG 30 THR 31 PRO 32 PRO 33 VAL 34 ASN 35 TYR 36 LEU 37 PRO 38 GLY 39 GLU 40 ILE 41 THR 42 ASP 43 LEU 44 LEU 45 GLN 46 LEU 47 ALA 48 ARG 49 ILE 50 PRO 51 THR 52 LEU 53 MET 54 ALA 55 PHE 56 GLU 57 ARG 58 VAL 59 PRO 60 GLU 61 PRO 62 VAL 63 PRO 64 ALA 65 SER 66 ASP 67 THR 68 TYR 69 VAL 70 PRO 71 TYR 72 VAL 73 ALA 74 VAL 75 PRO 76 THR 77 GLN 78 PHE 79 ASP 80 ASP 81 ARG 82 PRO 83 LEU 84 ILE 85 SER 86 PHE 87 PRO 88 ILE 89 THR 90 LEU 91 SER 92 ASP 93 PRO 94 VAL 95 TYR 96 GLN 97 ASN 98 THR 99 LEU 100 VAL 101 GLY 102 ALA 103 ILE 104 SER 105 SER 106 ASN 107 PHE 108 ALA 109 ASN 110 TYR 111 ARG 112 GLY 113 CYS 114 ILE 115 GLN 116 ILE 117 THR 118 LEU 119 THR 120 PHE 121 CYS 122 GLY 123 PRO 124 MET 125 MET 126 ALA 127 ARG 128 GLY 129 LYS 130 PHE 131 LEU 132 LEU 133 SER 134 TYR 135 SER 136 PRO 137 PRO 138 ASN 139 GLY 140 THR 141 GLN 142 PRO 143 GLN 144 THR 145 LEU 146 SER 147 GLU 148 ALA 149 MET 150 GLN 151 CYS 152 THR 153 TYR 154 SER 155 ILE 156 TRP 157 ASP 158 ILE 159 GLY 160 LEU 161 ASN 162 SER 163 SER 164 TRP 165 THR 166 PHE 167 VAL 168 VAL 169 PRO 170 TYR 171 ILE 172 SER 173 PRO 174 SER 175 ASP 176 TYR 177 ARG 178 GLU 179 THR 180 ARG 181 ALA 182 ILE 183 THR 184 ASN 185 SER 186 VAL 187 TYR 188 SER 189 ALA 190 ASP 191 GLY 192 TRP 193 PHE 194 SER 195 LEU 196 HIS 197 LYS 198 LEU 199 THR 200 LYS 201 ILE 202 THR 203 LEU 204 PRO 205 PRO 206 ASP 207 CYS 208 PRO 209 GLN 210 SER 211 PRO 212 CYS 213 ILE 214 LEU 215 PHE 216 PHE 217 ALA 218 SER 219 ALA 220 GLY 221 GLU 222 ASP 223 TYR 224 THR 225 LEU 226 ARG 227 LEU 228 PRO 229 VAL 230 ASP 231 CYS 232 ASN 233 PRO 234 SER 235 TYR 236 VAL 237 PHE 238
Unit 3	ASP 12 ARG 13 VAL 14 THR 15 THR 16 GLN 17 THR 18 ALA 19 GLY 20 ASN 21 THR 22 ALA 23 ILE 24 ASN 25 THR 26 GLN 27 SER 28 SER 29 LEU 30 GLY 31 VAL 32 LEU 33 CYS 34 ALA 35 TYR 36 VAL 37 GLU 38 ASP 39 PRO 40 THR 41 LYS 42 SER 43 ASP 44 PRO 45 PRO 46 SER 47 SER 48 SER 49 THR 50 ASP 51 GLN 52 PRO 53 THR 54 THR 55 THR 56 PHE 57 THR 58 ALA 59 ILE 60 ASP 61 ARG 62 TRP 63 TYR 64 THR 65 GLY 66 ARG 67 LEU 68 ASN 69 SER 70 TRP 71 THR 72 LYS 73 ALA 74 VAL 75 LYS 76 THR 77 PHE 78 SER 79 PHE 80 GLN 81 ALA 82 VAL 83 PRO 84 LEU 85 PRO 86 GLY 87 ALA 88 PHE 89 LEU 90 SER 91 ARG 92 GLN 93 GLY 94 GLY 95 LEU 96 ASN 97 GLY 98 GLY 99 ALA 100 PHE 101 THR 102 ALA 103 THR 104 LEU 105 HIS 106 ARG 107 HIS 108 PHE 109 LEU 110 MET 111 LYS 112 CYS 113 GLY 114 TRP 115 GLN 116 VAL 117 GLN 118 VAL 119 GLN 120 CYS 121 ASN 122 LEU 123 THR 124 GLN 125 PHE 126 HIS 127 GLN 128 GLY 129 ALA 130 LEU 131 LEU 132 VAL 133 ALA 134 MET 135 VAL 136 PRO 137 GLU 138 THR 139 THR 140 LEU 141 ASP 142 VAL 143 LYS 144 PRO 145 ASP 146 GLY 147 LYS 148 ALA 149 LYS 150 SER 151 LEU 152 GLN 153 GLU 154 LEU 155 ASN 156 GLU 157 GLU 158 GLN 159 TRP 160 VAL 161 GLU 162 MET 163 SER 164 ASP 165 ASP 166 TYR 167 ARG 168 THR 169 GLY 170 LYS 171 ASN 172 MET 173 PRO 174 PHE 175 GLN 176 SER 177 LEU 178 GLY 179 THR 180 TYR 181 TYR 182 ARG 183 PRO 184 PRO 185 ASN 186 TRP 187 THR 188 TRP 189 GLY 190 PRO 191 ASN 192 PHE 193 ILE 194 ASN 195 PRO 196 TYR 197 GLN 198 VAL 199 THR 200 VAL 201 PHE 202 PRO 203 HIS 204 GLN 205 ILE 206 LEU 207 ASN 208 ALA 209 ARG 210 THR 211 SER 212 THR 213 SER 214 VAL 215 ASP 216 ILE 217 ASN 218 VAL 219 PRO 220 TYR 221 ILE 222 GLY 223 GLU 224 THR 225 PRO 226 THR 227 GLN 228 SER 229 SER 230 GLU 231 THR 232 GLN 233 ASN 234 SER 235 TRP 236 THR 237 LEU 238 LEU 239 VAL 240 MET 241 VAL 242 LEU 243 VAL 244 PRO 245 LEU 246 ASP 247 TYR 248 LYS 249 GLU 250 GLY 251 ALA 252 THR 253 THR 254 ASP 255 PRO 256 GLU 257 ILE 258 THR 259 PHE 260 SER 261 VAL 262 ARG 263 PRO 264 THR 265 SER 266 PRO 267 TYR 268 PHE 269 ASN 270 GLY 271 LEU 272 ARG 273 ASN 274 ARG 275 TYR 276 THR 277 ALA 278 GLY 279
Unit 4	ARG 14 GLY 15 ASN 16 ASN 17 GLY 18 ASN 19 MET 20 THR 21 PHE 22 ASN 23 TYR 24 TYR 25 ALA 26 ASN 27 THR 28 TYR 29 GLN 30 ASN 31 SER 32 VAL 33 ASP 34 PHE 35 SER 36 THR 37 SER 38 GLY 63 ILE 64 LEU 65 ASN 66 PRO 67 LEU 68 GLY 69 TYR 70 LEU 71 LYS 72

Ligands

Unit 5

CA 500