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Title | STRUCTURE OF SENECA VALLEY VIRUS-001 | |
Keywords | VIRUS CAPSID PROTEIN STRUCTURE, ATP-BINDING, CYTOPLASM, CYTOPLASMIC VESICLE, HELICASE, HYDROLASE, MEMBRANE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, PHOSPHOPROTEIN, PROTEASE, RNA REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, VIRION, ICOSAHEDRAL VIRUS, VIRUS | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3CJI | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | POLYPROTEIN | A | 258 | 2015 | 0 |
2 | Protein | POLYPROTEIN | B | 238 | 1855 | 0 |
3 | Protein | POLYPROTEIN | C | 268 | 2105 | 0 |
4 | Protein | POLYPROTEIN | D | 35 | 278 | 0 |
5 | Ligand | POLYPROTEIN | B | 1 | 0 | 1 |
6 | Water | 267 | 0 | 267 | ||
total | 1067 | 6253 | 268 |
Unit 1 | SER1 THR2 ASP3 ASN4 ALA5 GLU6 THR7 GLY8 VAL9 ILE10 GLU11 ALA12 GLY13 ASN14 THR15 ASP16 THR17 ASP18 PHE19 SER20 GLY21 GLU22 LEU23 ALA24 ALA25 PRO26 GLY27 SER28 ASN29 HIS30 THR31 ASN32 VAL33 LYS34 PHE35 LEU36 PHE37 ASP38 ARG39 SER40 ARG41 LEU42 LEU43 ASN44 VAL45 ILE46 LYS47 VAL48 LEU49 GLU50 LYS51 ASP52 ALA53 VAL54 PHE55 PRO56 ARG57 PRO58 PHE59 PRO60 THR61 GLN62 GLU63 GLY64 ALA65 GLN66 GLN67 ASP68 ASP69 GLY70 TYR71 PHE72 CYS73 LEU74 LEU75 THR76 PRO77 ARG78 PRO79 THR80 VAL81 ALA82 SER83 ARG84 PRO85 ALA86 THR87 ARG88 PHE89 GLY90 LEU91 TYR92 ALA93 ASN94 PRO95 SER96 GLY97 SER98 GLY99 VAL100 LEU101 ALA102 ASN103 THR104 SER105 LEU106 ASP107 PHE108 ASN109 PHE110 TYR111 SER112 LEU113 ALA114 CYS115 PHE116 THR117 TYR118 PHE119 ARG120 SER121 ASP122 LEU123 GLU124 VAL125 THR126 VAL127 VAL128 SER129 LEU130 GLU131 PRO132 ASP133 LEU134 GLU135 PHE136 ALA137 VAL138 GLY139 TRP140 PHE141 PRO142 SER143 GLY144 SER145 GLU146 TYR147 GLN148 ALA149 SER150 SER151 PHE152 VAL153 TYR154 ASP155 GLN156 LEU157 HIS158 VAL159 PRO160 PHE161 HIS162 PHE163 THR164 GLY165 ARG166 THR167 PRO168 ARG169 ALA170 PHE171 ALA172 SER173 LYS174 GLY175 GLY176 LYS177 VAL178 SER179 PHE180 VAL181 LEU182 PRO183 TRP184 ASN185 SER186 VAL187 SER188 SER189 VAL190 LEU191 PRO192 VAL193 ARG194 TRP195 GLY196 GLY197 ALA198 SER199 LYS200 LEU201 SER202 SER203 ALA204 THR205 ARG206 GLY207 LEU208 PRO209 ALA210 HIS211 ALA212 ASP213 TRP214 GLY215 THR216 ILE217 TYR218 ALA219 PHE220 VAL221 PRO222 ARG223 PRO224 ASN225 GLU226 LYS227 LYS228 SER229 THR230 ALA231 VAL232 LYS233 HIS234 VAL235 ALA236 VAL237 TYR238 ILE239 ARG240 TYR241 LYS242 ASN243 ALA244 ARG245 ALA246 TRP247 CYS248 PRO249 SER250 MET251 LEU252 PRO253 PHE254 ARG255 SER256 TYR257 LYS258 |
Unit 2 | GLY1 PRO2 ILE3 PRO4 THR5 ALA6 PRO7 ARG8 GLU9 ASN10 SER11 LEU12 MET13 PHE14 LEU15 SER16 THR17 LEU18 PRO19 ASP20 ASP21 THR22 VAL23 PRO24 ALA25 TYR26 GLY27 ASN28 VAL29 ARG30 THR31 PRO32 PRO33 VAL34 ASN35 TYR36 LEU37 PRO38 GLY39 GLU40 ILE41 THR42 ASP43 LEU44 LEU45 GLN46 LEU47 ALA48 ARG49 ILE50 PRO51 THR52 LEU53 MET54 ALA55 PHE56 GLU57 ARG58 VAL59 PRO60 GLU61 PRO62 VAL63 PRO64 ALA65 SER66 ASP67 THR68 TYR69 VAL70 PRO71 TYR72 VAL73 ALA74 VAL75 PRO76 THR77 GLN78 PHE79 ASP80 ASP81 ARG82 PRO83 LEU84 ILE85 SER86 PHE87 PRO88 ILE89 THR90 LEU91 SER92 ASP93 PRO94 VAL95 TYR96 GLN97 ASN98 THR99 LEU100 VAL101 GLY102 ALA103 ILE104 SER105 SER106 ASN107 PHE108 ALA109 ASN110 TYR111 ARG112 GLY113 CYS114 ILE115 GLN116 ILE117 THR118 LEU119 THR120 PHE121 CYS122 GLY123 PRO124 MET125 MET126 ALA127 ARG128 GLY129 LYS130 PHE131 LEU132 LEU133 SER134 TYR135 SER136 PRO137 PRO138 ASN139 GLY140 THR141 GLN142 PRO143 GLN144 THR145 LEU146 SER147 GLU148 ALA149 MET150 GLN151 CYS152 THR153 TYR154 SER155 ILE156 TRP157 ASP158 ILE159 GLY160 LEU161 ASN162 SER163 SER164 TRP165 THR166 PHE167 VAL168 VAL169 PRO170 TYR171 ILE172 SER173 PRO174 SER175 ASP176 TYR177 ARG178 GLU179 THR180 ARG181 ALA182 ILE183 THR184 ASN185 SER186 VAL187 TYR188 SER189 ALA190 ASP191 GLY192 TRP193 PHE194 SER195 LEU196 HIS197 LYS198 LEU199 THR200 LYS201 ILE202 THR203 LEU204 PRO205 PRO206 ASP207 CYS208 PRO209 GLN210 SER211 PRO212 CYS213 ILE214 LEU215 PHE216 PHE217 ALA218 SER219 ALA220 GLY221 GLU222 ASP223 TYR224 THR225 LEU226 ARG227 LEU228 PRO229 VAL230 ASP231 CYS232 ASN233 PRO234 SER235 TYR236 VAL237 PHE238 |
Unit 3 | ASP12 ARG13 VAL14 THR15 THR16 GLN17 THR18 ALA19 GLY20 ASN21 THR22 ALA23 ILE24 ASN25 THR26 GLN27 SER28 SER29 LEU30 GLY31 VAL32 LEU33 CYS34 ALA35 TYR36 VAL37 GLU38 ASP39 PRO40 THR41 LYS42 SER43 ASP44 PRO45 PRO46 SER47 SER48 SER49 THR50 ASP51 GLN52 PRO53 THR54 THR55 THR56 PHE57 THR58 ALA59 ILE60 ASP61 ARG62 TRP63 TYR64 THR65 GLY66 ARG67 LEU68 ASN69 SER70 TRP71 THR72 LYS73 ALA74 VAL75 LYS76 THR77 PHE78 SER79 PHE80 GLN81 ALA82 VAL83 PRO84 LEU85 PRO86 GLY87 ALA88 PHE89 LEU90 SER91 ARG92 GLN93 GLY94 GLY95 LEU96 ASN97 GLY98 GLY99 ALA100 PHE101 THR102 ALA103 THR104 LEU105 HIS106 ARG107 HIS108 PHE109 LEU110 MET111 LYS112 CYS113 GLY114 TRP115 GLN116 VAL117 GLN118 VAL119 GLN120 CYS121 ASN122 LEU123 THR124 GLN125 PHE126 HIS127 GLN128 GLY129 ALA130 LEU131 LEU132 VAL133 ALA134 MET135 VAL136 PRO137 GLU138 THR139 THR140 LEU141 ASP142 VAL143 LYS144 PRO145 ASP146 GLY147 LYS148 ALA149 LYS150 SER151 LEU152 GLN153 GLU154 LEU155 ASN156 GLU157 GLU158 GLN159 TRP160 VAL161 GLU162 MET163 SER164 ASP165 ASP166 TYR167 ARG168 THR169 GLY170 LYS171 ASN172 MET173 PRO174 PHE175 GLN176 SER177 LEU178 GLY179 THR180 TYR181 TYR182 ARG183 PRO184 PRO185 ASN186 TRP187 THR188 TRP189 GLY190 PRO191 ASN192 PHE193 ILE194 ASN195 PRO196 TYR197 GLN198 VAL199 THR200 VAL201 PHE202 PRO203 HIS204 GLN205 ILE206 LEU207 ASN208 ALA209 ARG210 THR211 SER212 THR213 SER214 VAL215 ASP216 ILE217 ASN218 VAL219 PRO220 TYR221 ILE222 GLY223 GLU224 THR225 PRO226 THR227 GLN228 SER229 SER230 GLU231 THR232 GLN233 ASN234 SER235 TRP236 THR237 LEU238 LEU239 VAL240 MET241 VAL242 LEU243 VAL244 PRO245 LEU246 ASP247 TYR248 LYS249 GLU250 GLY251 ALA252 THR253 THR254 ASP255 PRO256 GLU257 ILE258 THR259 PHE260 SER261 VAL262 ARG263 PRO264 THR265 SER266 PRO267 TYR268 PHE269 ASN270 GLY271 LEU272 ARG273 ASN274 ARG275 TYR276 THR277 ALA278 GLY279 |
Unit 4 | ARG14 GLY15 ASN16 ASN17 GLY18 ASN19 MET20 THR21 PHE22 ASN23 TYR24 TYR25 ALA26 ASN27 THR28 TYR29 GLN30 ASN31 SER32 VAL33 ASP34 PHE35 SER36 THR37 SER38 GLY63 ILE64 LEU65 ASN66 PRO67 LEU68 GLY69 TYR70 LEU71 LYS72 |
Unit 5 | CA500 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |