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Sequence, Chains, Asymmetric and Biological Units

Title MOUSE TOLL-LIKE RECEPTOR 3 ECTODOMAIN COMPLEXED WITH DOUBLE- RNA
Keywords LEUCINE RICH REPEAT, LRR, PROTEIN-DSRNA COMPLEX, INNATE IMMU TLR, DSRNA, GLYCOPROTEIN, IMMUNE RESPONSE, INFLAMMATORY RES LEUCINE-RICH REPEAT, MEMBRANE, RECEPTOR, TRANSMEMBRANE, IMM SYSTEM-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3CIY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 46 978 0
2  RNA    D 46 968 0
3  Protein   TOLL-LIKE RECEPTOR 3  A 661 5310 0
4  Protein   TOLL-LIKE RECEPTOR 3  B 668 5360 0
5  Ligand    E 2 0 28
6  Ligand    F 3 0 39
7  Ligand    G 3 0 38
8  Ligand    H 2 0 28
9  Ligand    I 5 0 61
10  Ligand    J 3 0 39
11  Ligand    K 2 0 28
12  Ligand    L 2 0 28
13  Ligand    M 3 0 39
14  Ligand    N 3 0 38
15  Ligand    O 2 0 28
16  Ligand    P 5 0 61
17  Ligand    Q 3 0 39
18  Ligand    R 2 0 28
19  Ligand   TOLL-LIKE RECEPTOR 3  A 2 0 28
20  Ligand   TOLL-LIKE RECEPTOR 3  B 2 0 28
total       1465 12616 578
Proteins
Unit 3 CYS28 THR29 VAL30 ARG31 TYR32 ASN33 VAL34 ALA35 ASP36 CYS37 SER38 HIS39 LEU40 LYS41 LEU42 THR43 HIS44 ILE45 PRO46 ASP47 ASP48 LEU49 PRO50 SER51 ASN52 ILE53 THR54 VAL55 LEU56 ASN57 LEU58 THR59 HIS60 ASN61 GLN62 LEU63 ARG64 ARG65 LEU66 PRO67 PRO68 THR69 ASN70 PHE71 THR72 ARG73 TYR74 SER75 GLN76 LEU77 ALA78 ILE79 LEU80 ASP81 ALA82 GLY83 PHE84 ASN85 SER86 ILE87 SER88 LYS89 LEU90 GLU91 PRO92 GLU93 LEU94 CYS95 GLN96 ILE97 LEU98 PRO99 LEU100 LEU101 LYS102 VAL103 LEU104 ASN105 LEU106 GLN107 HIS108 ASN109 GLU110 LEU111 SER112 GLN113 ILE114 SER115 ASP116 GLN117 THR118 PHE119 VAL120 PHE121 CYS122 THR123 ASN124 LEU125 THR126 GLU127 LEU128 ASP129 LEU130 MET131 SER132 ASN133 SER134 ILE135 HIS136 LYS137 ILE138 LYS139 SER140 ASN141 PRO142 PHE143 LYS144 ASN145 GLN146 LYS147 ASN148 LEU149 ILE150 LYS151 LEU152 ASP153 LEU154 SER155 HIS156 ASN157 GLY158 LEU159 SER160 SER161 THR162 LYS163 LEU164 GLY165 THR166 GLY167 VAL168 GLN169 LEU170 GLU171 ASN172 LEU173 GLN174 GLU175 LEU176 LEU177 LEU178 ALA179 LYS180 ASN181 LYS182 ILE183 LEU184 ALA185 LEU186 ARG187 SER188 GLU189 GLU190 LEU191 GLU192 PHE193 LEU194 GLY195 ASN196 SER197 SER198 LEU199 ARG200 LYS201 LEU202 ASP203 LEU204 SER205 SER206 ASN207 PRO208 LEU209 LYS210 GLU211 PHE212 SER213 PRO214 GLY215 CYS216 PHE217 GLN218 THR219 ILE220 GLY221 LYS222 LEU223 PHE224 ALA225 LEU226 LEU227 LEU228 ASN229 ASN230 ALA231 GLN232 LEU233 ASN234 PRO235 HIS236 LEU237 THR238 GLU239 LYS240 LEU241 CYS242 TRP243 GLU244 LEU245 SER246 ASN247 THR248 SER249 ILE250 GLN251 ASN252 LEU253 SER254 LEU255 ALA256 ASN257 ASN258 GLN259 LEU260 LEU261 ALA262 THR263 SER264 GLU265 SER266 THR267 PHE268 SER269 GLY270 LEU271 LYS272 TRP273 THR274 ASN275 LEU276 THR277 GLN278 LEU279 ASP280 LEU281 SER282 TYR283 ASN284 ASN285 LEU286 HIS287 ASP288 VAL289 GLY290 ASN291 GLY292 SER293 PHE294 SER295 TYR296 LEU297 PRO298 SER299 LEU300 ARG301 TYR302 LEU303 SER304 LEU305 GLU306 TYR307 ASN308 ASN309 ILE310 GLN311 ARG312 LEU313 SER314 PRO315 ARG316 SER317 PHE318 TYR319 GLY320 LEU321 SER322 ASN323 LEU324 ARG325 TYR326 LEU327 SER328 LEU329 LYS330 ARG331 ALA332 PHE333 THR334 LYS335 SER342 HIS343 PRO344 ASN345 ILE346 ASP347 ASP348 PHE349 SER350 PHE351 GLN352 TRP353 LEU354 LYS355 TYR356 LEU357 GLU358 TYR359 LEU360 ASN361 MET362 ASP363 ASP364 ASN365 ASN366 ILE367 PRO368 SER369 THR370 LYS371 SER372 ASN373 THR374 PHE375 THR376 GLY377 LEU378 VAL379 SER380 LEU381 LYS382 TYR383 LEU384 SER385 LEU386 SER387 LYS388 THR389 PHE390 THR391 SER392 LEU393 GLN394 THR395 LEU396 THR397 ASN398 GLU399 THR400 PHE401 VAL402 SER403 LEU404 ALA405 HIS406 SER407 PRO408 LEU409 LEU410 THR411 LEU412 ASN413 LEU414 THR415 LYS416 ASN417 HIS418 ILE419 SER420 LYS421 ILE422 ALA423 ASN424 GLY425 THR426 PHE427 SER428 TRP429 LEU430 GLY431 GLN432 LEU433 ARG434 ILE435 LEU436 ASP437 LEU438 GLY439 LEU440 ASN441 GLU442 ILE443 GLU444 GLN445 LYS446 LEU447 SER448 GLY449 GLN450 GLU451 TRP452 ARG453 GLY454 LEU455 ARG456 ASN457 ILE458 PHE459 GLU460 ILE461 TYR462 LEU463 SER464 TYR465 ASN466 LYS467 TYR468 LEU469 GLN470 LEU471 SER472 THR473 SER474 SER475 PHE476 ALA477 LEU478 VAL479 PRO480 SER481 LEU482 GLN483 ARG484 LEU485 MET486 LEU487 ARG488 ARG489 VAL490 ALA491 LEU492 LYS493 ASN494 VAL495 ASP496 ILE497 SER498 PRO499 SER500 PRO501 PHE502 ARG503 PRO504 LEU505 ARG506 ASN507 LEU508 THR509 ILE510 LEU511 ASP512 LEU513 SER514 ASN515 ASN516 ASN517 ILE518 ALA519 ASN520 ILE521 ASN522 GLU523 ASP524 LEU525 LEU526 GLU527 GLY528 LEU529 GLU530 ASN531 LEU532 GLU533 ILE534 LEU535 ASP536 PHE537 GLN538 HIS539 ASN540 ASN541 LEU542 ALA543 ARG544 LEU545 TRP546 ASN550 PRO551 GLY552 GLY553 PRO554 VAL555 ASN556 PHE557 LEU558 LYS559 GLY560 LEU561 SER562 HIS563 LEU564 HIS565 ILE566 LEU567 ASN568 LEU569 GLU570 SER571 ASN572 GLY573 LEU574 ASP575 GLU576 ILE577 PRO578 VAL579 GLY580 VAL581 PHE582 LYS583 ASN584 LEU585 PHE586 GLU587 LEU588 LYS589 SER590 ILE591 ASN592 LEU593 GLY594 LEU595 ASN596 ASN597 LEU598 ASN599 LYS600 LEU601 GLU602 PRO603 PHE604 ILE605 PHE606 ASP607 ASP608 GLN609 THR610 SER611 LEU612 ARG613 SER614 LEU615 ASN616 LEU617 GLN618 LYS619 ASN620 LEU621 ILE622 THR623 SER624 VAL625 GLU626 LYS627 ASP628 VAL629 PHE630 GLY631 PRO632 PRO633 PHE634 GLN635 ASN636 LEU637 ASN638 SER639 LEU640 ASP641 MET642 ARG643 PHE644 ASN645 PRO646 PHE647 ASP648 CYS649 THR650 CYS651 GLU652 SER653 ILE654 SER655 TRP656 PHE657 VAL658 ASN659 TRP660 ILE661 ASN662 GLN663 THR664 HIS665 THR666 ASN667 ILE668 SER669 GLU670 LEU671 SER672 THR673 HIS674 TYR675 LEU676 CYS677 ASN678 THR679 PRO680 HIS681 HIS682 TYR683 TYR684 GLY685 PHE686 PRO687 LEU688 LYS689 LEU690 PHE691 ASP692 THR693 SER694 SER695 CYS696 LYS697
Unit 4 GLN27 CYS28 THR29 VAL30 ARG31 TYR32 ASN33 VAL34 ALA35 ASP36 CYS37 SER38 HIS39 LEU40 LYS41 LEU42 THR43 HIS44 ILE45 PRO46 ASP47 ASP48 LEU49 PRO50 SER51 ASN52 ILE53 THR54 VAL55 LEU56 ASN57 LEU58 THR59 HIS60 ASN61 GLN62 LEU63 ARG64 ARG65 LEU66 PRO67 PRO68 THR69 ASN70 PHE71 THR72 ARG73 TYR74 SER75 GLN76 LEU77 ALA78 ILE79 LEU80 ASP81 ALA82 GLY83 PHE84 ASN85 SER86 ILE87 SER88 LYS89 LEU90 GLU91 PRO92 GLU93 LEU94 CYS95 GLN96 ILE97 LEU98 PRO99 LEU100 LEU101 LYS102 VAL103 LEU104 ASN105 LEU106 GLN107 HIS108 ASN109 GLU110 LEU111 SER112 GLN113 ILE114 SER115 ASP116 GLN117 THR118 PHE119 VAL120 PHE121 CYS122 THR123 ASN124 LEU125 THR126 GLU127 LEU128 ASP129 LEU130 MET131 SER132 ASN133 SER134 ILE135 HIS136 LYS137 ILE138 LYS139 SER140 ASN141 PRO142 PHE143 LYS144 ASN145 GLN146 LYS147 ASN148 LEU149 ILE150 LYS151 LEU152 ASP153 LEU154 SER155 HIS156 ASN157 GLY158 LEU159 SER160 SER161 THR162 LYS163 LEU164 GLY165 THR166 GLY167 VAL168 GLN169 LEU170 GLU171 ASN172 LEU173 GLN174 GLU175 LEU176 LEU177 LEU178 ALA179 LYS180 ASN181 LYS182 ILE183 LEU184 ALA185 LEU186 ARG187 SER188 GLU189 GLU190 LEU191 GLU192 PHE193 LEU194 GLY195 ASN196 SER197 SER198 LEU199 ARG200 LYS201 LEU202 ASP203 LEU204 SER205 SER206 ASN207 PRO208 LEU209 LYS210 GLU211 PHE212 SER213 PRO214 GLY215 CYS216 PHE217 GLN218 THR219 ILE220 GLY221 LYS222 LEU223 PHE224 ALA225 LEU226 LEU227 LEU228 ASN229 ASN230 ALA231 GLN232 LEU233 ASN234 PRO235 HIS236 LEU237 THR238 GLU239 LYS240 LEU241 CYS242 TRP243 GLU244 LEU245 SER246 ASN247 THR248 SER249 ILE250 GLN251 ASN252 LEU253 SER254 LEU255 ALA256 ASN257 ASN258 GLN259 LEU260 LEU261 ALA262 THR263 SER264 GLU265 SER266 THR267 PHE268 SER269 GLY270 LEU271 LYS272 TRP273 THR274 ASN275 LEU276 THR277 GLN278 LEU279 ASP280 LEU281 SER282 TYR283 ASN284 ASN285 LEU286 HIS287 ASP288 VAL289 GLY290 ASN291 GLY292 SER293 PHE294 SER295 TYR296 LEU297 PRO298 SER299 LEU300 ARG301 TYR302 LEU303 SER304 LEU305 GLU306 TYR307 ASN308 ASN309 ILE310 GLN311 ARG312 LEU313 SER314 PRO315 ARG316 SER317 PHE318 TYR319 GLY320 LEU321 SER322 ASN323 LEU324 ARG325 TYR326 LEU327 SER328 LEU329 LYS330 ARG331 ALA332 PHE333 THR334 LYS335 GLN336 SER337 VAL338 SER339 LEU340 ALA341 SER342 HIS343 PRO344 ASN345 ILE346 ASP347 ASP348 PHE349 SER350 PHE351 GLN352 TRP353 LEU354 LYS355 TYR356 LEU357 GLU358 TYR359 LEU360 ASN361 MET362 ASP363 ASP364 ASN365 ASN366 ILE367 PRO368 SER369 THR370 LYS371 SER372 ASN373 THR374 PHE375 THR376 GLY377 LEU378 VAL379 SER380 LEU381 LYS382 TYR383 LEU384 SER385 LEU386 SER387 LYS388 THR389 PHE390 THR391 SER392 LEU393 GLN394 THR395 LEU396 THR397 ASN398 GLU399 THR400 PHE401 VAL402 SER403 LEU404 ALA405 HIS406 SER407 PRO408 LEU409 LEU410 THR411 LEU412 ASN413 LEU414 THR415 LYS416 ASN417 HIS418 ILE419 SER420 LYS421 ILE422 ALA423 ASN424 GLY425 THR426 PHE427 SER428 TRP429 LEU430 GLY431 GLN432 LEU433 ARG434 ILE435 LEU436 ASP437 LEU438 GLY439 LEU440 ASN441 GLU442 ILE443 GLU444 GLN445 LYS446 LEU447 SER448 GLY449 GLN450 GLU451 TRP452 ARG453 GLY454 LEU455 ARG456 ASN457 ILE458 PHE459 GLU460 ILE461 TYR462 LEU463 SER464 TYR465 ASN466 LYS467 TYR468 LEU469 GLN470 LEU471 SER472 THR473 SER474 SER475 PHE476 ALA477 LEU478 VAL479 PRO480 SER481 LEU482 GLN483 ARG484 LEU485 MET486 LEU487 ARG488 ARG489 VAL490 ALA491 LEU492 LYS493 ASN494 VAL495 ASP496 ILE497 SER498 PRO499 SER500 PRO501 PHE502 ARG503 PRO504 LEU505 ARG506 ASN507 LEU508 THR509 ILE510 LEU511 ASP512 LEU513 SER514 ASN515 ASN516 ASN517 ILE518 ALA519 ASN520 ILE521 ASN522 GLU523 ASP524 LEU525 LEU526 GLU527 GLY528 LEU529 GLU530 ASN531 LEU532 GLU533 ILE534 LEU535 ASP536 PHE537 GLN538 HIS539 ASN540 ASN541 LEU542 ALA543 ARG544 LEU545 TRP546 ASN550 PRO551 GLY552 GLY553 PRO554 VAL555 ASN556 PHE557 LEU558 LYS559 GLY560 LEU561 SER562 HIS563 LEU564 HIS565 ILE566 LEU567 ASN568 LEU569 GLU570 SER571 ASN572 GLY573 LEU574 ASP575 GLU576 ILE577 PRO578 VAL579 GLY580 VAL581 PHE582 LYS583 ASN584 LEU585 PHE586 GLU587 LEU588 LYS589 SER590 ILE591 ASN592 LEU593 GLY594 LEU595 ASN596 ASN597 LEU598 ASN599 LYS600 LEU601 GLU602 PRO603 PHE604 ILE605 PHE606 ASP607 ASP608 GLN609 THR610 SER611 LEU612 ARG613 SER614 LEU615 ASN616 LEU617 GLN618 LYS619 ASN620 LEU621 ILE622 THR623 SER624 VAL625 GLU626 LYS627 ASP628 VAL629 PHE630 GLY631 PRO632 PRO633 PHE634 GLN635 ASN636 LEU637 ASN638 SER639 LEU640 ASP641 MET642 ARG643 PHE644 ASN645 PRO646 PHE647 ASP648 CYS649 THR650 CYS651 GLU652 SER653 ILE654 SER655 TRP656 PHE657 VAL658 ASN659 TRP660 ILE661 ASN662 GLN663 THR664 HIS665 THR666 ASN667 ILE668 SER669 GLU670 LEU671 SER672 THR673 HIS674 TYR675 LEU676 CYS677 ASN678 THR679 PRO680 HIS681 HIS682 TYR683 TYR684 GLY685 PHE686 PRO687 LEU688 LYS689 LEU690 PHE691 ASP692 THR693 SER694 SER695 CYS696 LYS697
Nucleic acids
Unit 1 A1 U2 U3 C4 U5 G6 C7 G8 G9 A10 U11 U12 A13 U14 U15 U16 G17 G18 C19 A20 A21 A22 G23 G24 A25 A26 G27 C28 A29 U30 U31 G32 A33 C34 A35 C36 A37 U38 G39 C40 G41 C42 C43 A44 A45 U46
Unit 2 A1 U2 U3 G4 G5 C6 G7 C8 A9 U10 G11 U12 G13 U14 C15 A16 A17 U18 G19 C20 U21 U22 C23 C24 U25 U26 U27 G28 C29 C30 A31 A32 A33 U34 A35 A36 U37 C38 C39 G40 C41 A42 G43 A44 A45 U46
Ligands
Unit 5 NAG1 NDG2
Unit 6 NAG1 NAG2 MAN3
Unit 7 NAG1 NAG2 FUC3
Unit 8 NAG1 NDG2
Unit 9 NAG1 NAG2 MAN3 MAN4 MAN5
Unit 10 NAG1 NDG2 BMA3
Unit 11 NAG1 NAG2
Unit 12 NAG1 NDG2
Unit 13 NAG1 NAG2 BMA3
Unit 14 NAG1 NAG2 FUL3
Unit 15 NAG1 NDG2
Unit 16 NAG1 NDG2 MAN3 MAN4 MAN5
Unit 17 NAG1 NDG2 BMA3
Unit 18 NAG1 NAG2
Unit 19 NAG724 NAG1961
Unit 20 NAG724 NAG1961
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany