3CFI - Sequence, Chains, Asymmetric and Biological Units

• Title: NANOBODY-AIDED STRUCTURE DETERMINATION OF THE EPSI:EPSJ PSEU HETERDIMER FROM VIBRIO VULNIFICUS
• Keywords: GENERAL SECRETORY PATHWAY, PSEUDOPILINS, SINGLE CHAIN ANTIBO METHYLATION, PROTEIN TRANSPORT-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3CFI	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSI	A	76	587	0
2	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	B	160	1322	0
3	Protein	NANOBODY NBEPSIJ_11	C	115	879	0
4	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSI	D	80	611	0
5	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	E	158	1306	0
6	Protein	NANOBODY NBEPSIJ_11	F	114	872	0
7	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSI	G	74	573	0
8	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	H	157	1303	0
9	Protein	NANOBODY NBEPSIJ_11	I	116	888	0
10	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSI	J	81	624	0
11	Protein	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	K	153	1270	0
12	Protein	NANOBODY NBEPSIJ_11	L	109	835	0
13	Ligand	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	H	1	0	1
14	Ligand	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	E	1	0	1
15	Ligand	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	K	1	0	1
16	Ligand	TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSJ	B	1	0	1
17	Water			155	0	155
total				1552	11070	159

Proteins

Unit 1	TYR 33 LEU 34 GLU 35 GLN 36 LYS 37 MET 38 PHE 39 ALA 40 ALA 41 MET 42 VAL 43 ALA 44 ASP 45 ASN 46 GLN 47 MET 48 ALA 49 MET 50 VAL 51 MET 52 LEU 53 ASN 54 LYS 56 ASN 57 LEU 58 LYS 59 ALA 60 SER 61 ASN 62 GLY 63 GLU 64 GLU 65 GLU 66 LEU 67 ALA 68 GLY 69 GLN 70 THR 71 TRP 72 TYR 73 TRP 74 LYS 75 VAL 76 ALA 77 PRO 78 VAL 79 ALA 80 THR 81 THR 82 GLN 83 PRO 84 LEU 85 LYS 87 ALA 88 PHE 89 ASP 90 VAL 91 SER 92 VAL 93 ALA 94 ALA 95 GLU 96 LYS 97 GLN 98 ALA 99 SER 100 PRO 101 ILE 102 ILE 103 THR 104 VAL 105 ARG 106 SER 107 TYR 108 VAL 109 ALA 110
Unit 2	GLU 32 LEU 33 SER 34 GLN 35 GLU 36 ARG 37 THR 38 ALA 39 ARG 40 LEU 41 ASN 42 GLU 43 LEU 44 GLN 45 ARG 46 ALA 47 LEU 48 VAL 49 MET 50 MET 51 ASP 52 SER 53 ASP 54 PHE 55 ARG 56 GLN 57 ILE 58 ALA 59 LEU 60 ARG 61 GLN 62 THR 63 ARG 64 THR 65 ASN 66 GLY 67 GLU 68 SER 71 LYS 72 LYS 73 LEU 74 LEU 75 HIS 76 TRP 77 ALA 78 ASP 79 TYR 80 LEU 81 LEU 82 ASP 83 SER 84 ASP 85 ASN 86 LYS 87 GLY 88 ILE 89 MET 90 PHE 91 ALA 92 ARG 93 LEU 94 GLY 95 TRP 96 HIS 97 ASN 98 PRO 99 GLN 100 GLN 101 GLN 102 PHE 103 PRO 104 ARG 105 GLY 106 GLU 107 VAL 108 THR 109 LYS 110 VAL 111 GLY 112 TYR 113 ARG 114 ILE 115 LYS 116 ASP 117 GLU 118 ARG 119 LEU 120 GLU 121 ARG 122 VAL 123 TRP 124 TRP 125 ARG 126 TYR 127 PRO 128 ASP 129 THR 130 PRO 131 ALA 132 GLY 133 GLN 134 GLU 135 GLY 136 VAL 137 VAL 138 THR 139 PRO 140 LEU 141 LEU 142 SER 143 ASP 144 VAL 145 GLU 146 GLU 147 LEU 148 ASN 149 VAL 150 ARG 151 PHE 152 TYR 153 ASP 154 GLY 155 LYS 156 GLN 157 TRP 158 ILE 159 ASN 160 GLU 161 TRP 162 SER 163 ASN 164 GLU 165 LEU 166 THR 167 LEU 168 PRO 169 ALA 170 ALA 171 ILE 172 SER 173 VAL 174 GLU 175 LEU 176 THR 177 LEU 178 LYS 179 ASP 180 TYR 181 GLY 182 LYS 183 ILE 184 ALA 185 ARG 186 THR 187 TYR 188 LEU 189 THR 190 PRO 191 GLU 192 GLY 193
Unit 3	VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ALA 28 PHE 29 SER 30 GLY 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 GLY 50 ILE 51 ASN 52 ARG 53 ASP 54 GLY 55 SER 56 THR 57 SER 58 TYR 59 THR 60 ALA 61 PRO 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 ARG 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 LYS 97 TRP 98 LEU 99 GLY 100 GLY 101 ARG 102 ASP 103 TRP 104 TYR 105 ASP 106 ARG 107 GLY 108 GLN 109 GLY 110 THR 111 GLN 112 VAL 113 THR 114 VAL 115 SER 116
Unit 4	ILE 28 ASN 29 THR 30 VAL 31 GLY 32 TYR 33 LEU 34 GLU 35 GLN 36 LYS 37 MET 38 PHE 39 ALA 40 ALA 41 MET 42 VAL 43 ALA 44 ASP 45 ASN 46 GLN 47 MET 48 ALA 49 MET 50 VAL 51 MET 52 LEU 53 ASN 54 PRO 55 ASN 57 LEU 58 LYS 59 ALA 60 SER 61 ASN 62 GLY 63 GLU 64 GLU 65 GLU 66 LEU 67 ALA 68 GLY 69 GLN 70 THR 71 TRP 72 TYR 73 TRP 74 LYS 75 VAL 76 ALA 77 PRO 78 VAL 79 ALA 80 THR 81 THR 82 LEU 85 LEU 86 LYS 87 ALA 88 PHE 89 ASP 90 VAL 91 SER 92 VAL 93 ALA 94 ALA 95 GLU 96 LYS 97 GLN 98 ALA 99 SER 100 PRO 101 ILE 102 ILE 103 THR 104 VAL 105 ARG 106 SER 107 TYR 108 VAL 109 ALA 110
Unit 5	ASN 31 GLU 32 LEU 33 SER 34 GLN 35 GLU 36 ARG 37 THR 38 ALA 39 ARG 40 LEU 41 ASN 42 GLU 43 LEU 44 GLN 45 ARG 46 ALA 47 LEU 48 VAL 49 MET 50 MET 51 ASP 52 SER 53 ASP 54 PHE 55 ARG 56 GLN 57 ILE 58 ALA 59 LEU 60 ARG 61 GLN 62 THR 63 ARG 64 THR 65 ASN 66 SER 71 LYS 72 LYS 73 LEU 74 LEU 75 HIS 76 TRP 77 ALA 78 ASP 79 TYR 80 LEU 81 LEU 82 ASP 83 SER 84 ASP 85 ASN 86 LYS 87 GLY 88 ILE 89 MET 90 PHE 91 ALA 92 ARG 93 LEU 94 GLY 95 TRP 96 HIS 97 ASN 98 PRO 99 GLN 100 GLN 101 PRO 104 ARG 105 GLY 106 GLU 107 VAL 108 THR 109 LYS 110 VAL 111 GLY 112 TYR 113 ARG 114 ILE 115 LYS 116 ASP 117 GLU 118 ARG 119 LEU 120 GLU 121 ARG 122 VAL 123 TRP 124 TRP 125 ARG 126 TYR 127 PRO 128 ASP 129 THR 130 PRO 131 ALA 132 GLY 133 GLN 134 GLU 135 GLY 136 VAL 137 VAL 138 THR 139 PRO 140 LEU 141 LEU 142 SER 143 ASP 144 VAL 145 GLU 146 GLU 147 LEU 148 ASN 149 VAL 150 ARG 151 PHE 152 TYR 153 ASP 154 GLY 155 LYS 156 GLN 157 TRP 158 ILE 159 ASN 160 GLU 161 TRP 162 SER 163 ASN 164 GLU 165 LEU 166 THR 167 LEU 168 PRO 169 ALA 170 ALA 171 ILE 172 SER 173 VAL 174 GLU 175 LEU 176 THR 177 LEU 178 LYS 179 ASP 180 TYR 181 GLY 182 LYS 183 ILE 184 ALA 185 ARG 186 THR 187 TYR 188 LEU 189 THR 190 PRO 191 GLU 192 GLY 193 ASN 194
Unit 6	VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ALA 28 PHE 29 SER 30 GLY 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 GLY 50 ILE 51 ASN 52 ARG 53 ASP 54 GLY 55 SER 56 THR 57 SER 58 TYR 59 THR 60 ALA 61 PRO 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 ARG 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 LYS 97 TRP 98 LEU 99 GLY 100 GLY 101 ARG 102 ASP 103 TRP 104 TYR 105 ASP 106 ARG 107 GLY 108 GLN 109 GLY 110 THR 111 GLN 112 VAL 113 THR 114 VAL 115
Unit 7	ILE 28 ASN 29 THR 30 VAL 31 GLY 32 TYR 33 LEU 34 GLU 35 GLN 36 LYS 37 MET 38 PHE 39 ALA 40 ALA 41 MET 42 VAL 43 ALA 44 ASP 45 ASN 46 GLN 47 MET 48 ALA 49 MET 50 VAL 51 MET 52 LEU 53 ASN 54 PRO 55 LYS 56 ASN 57 LYS 59 ALA 60 SER 61 ASN 62 GLY 63 GLU 64 GLU 65 GLU 66 LEU 67 ALA 68 GLY 69 GLN 70 THR 71 TRP 72 TYR 73 TRP 74 LYS 75 VAL 76 ALA 77 PRO 78 VAL 79 ALA 80 LEU 86 LYS 87 ALA 88 PHE 89 ASP 90 VAL 91 SER 92 VAL 93 ALA 94 ALA 95 GLU 96 LYS 97 GLN 98 SER 100 PRO 101 ILE 102 ILE 103 THR 104 VAL 105 ARG 106 SER 107 TYR 108
Unit 8	GLU 32 LEU 33 SER 34 GLN 35 GLU 36 ARG 37 THR 38 ALA 39 ARG 40 LEU 41 ASN 42 GLU 43 LEU 44 GLN 45 ARG 46 ALA 47 LEU 48 VAL 49 MET 50 MET 51 ASP 52 SER 53 ASP 54 PHE 55 ARG 56 GLN 57 ILE 58 ALA 59 LEU 60 ARG 61 GLN 62 THR 63 ARG 64 THR 65 ASN 66 GLY 67 GLU 68 LYS 72 LYS 73 LEU 74 LEU 75 HIS 76 TRP 77 ALA 78 ASP 79 TYR 80 LEU 81 LEU 82 ASP 83 SER 84 ASP 85 ASN 86 LYS 87 GLY 88 ILE 89 MET 90 PHE 91 ALA 92 ARG 93 LEU 94 GLY 95 TRP 96 HIS 97 ASN 98 PRO 99 GLN 100 GLN 101 GLN 102 PHE 103 PRO 104 ARG 105 GLY 106 GLU 107 VAL 108 THR 109 LYS 110 VAL 111 GLY 112 TYR 113 ARG 114 ILE 115 LYS 116 ASP 117 GLU 118 ARG 119 LEU 120 GLU 121 ARG 122 VAL 123 TRP 124 TRP 125 ARG 126 TYR 127 PRO 128 ASP 129 THR 130 PRO 131 ALA 132 GLY 133 GLN 134 GLU 135 GLY 136 VAL 137 VAL 138 THR 139 PRO 140 LEU 141 LEU 142 SER 143 ASP 144 VAL 145 GLU 146 GLU 147 LEU 148 ASN 149 VAL 150 ARG 151 PHE 152 TYR 153 ASP 154 GLY 155 LYS 156 GLN 157 TRP 158 ILE 159 ASN 160 GLU 161 TRP 162 SER 163 ASN 164 GLU 165 LEU 166 THR 167 LEU 168 PRO 169 ALA 170 ALA 171 ILE 172 SER 173 VAL 174 GLU 175 LEU 176 THR 177 LEU 178 LYS 179 ASP 180 TYR 181 GLY 182 LYS 183 ILE 184 ALA 185 ARG 186 THR 187 TYR 188 LEU 189 THR 190 PRO 191
Unit 9	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ALA 28 PHE 29 SER 30 GLY 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 GLY 50 ILE 51 ASN 52 ARG 53 ASP 54 GLY 55 SER 56 THR 57 SER 58 TYR 59 THR 60 ALA 61 PRO 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 ARG 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 LYS 97 TRP 98 LEU 99 GLY 100 GLY 101 ARG 102 ASP 103 TRP 104 TYR 105 ASP 106 ARG 107 GLY 108 GLN 109 GLY 110 THR 111 GLN 112 VAL 113 THR 114 VAL 115 SER 116
Unit 10	ILE 28 ASN 29 THR 30 VAL 31 GLY 32 TYR 33 LEU 34 GLU 35 GLN 36 LYS 37 MET 38 PHE 39 ALA 40 ALA 41 MET 42 VAL 43 ALA 44 ASP 45 ASN 46 GLN 47 MET 48 ALA 49 MET 50 VAL 51 MET 52 LEU 53 ASN 54 PRO 55 LYS 56 ASN 57 LEU 58 LYS 59 ALA 60 SER 61 ASN 62 GLY 63 GLU 64 GLU 65 GLU 66 LEU 67 ALA 68 GLY 69 GLN 70 THR 71 TRP 72 TYR 73 TRP 74 LYS 75 VAL 76 ALA 77 PRO 78 VAL 79 ALA 80 THR 81 THR 82 GLN 83 PRO 84 LEU 85 LEU 86 LYS 87 ALA 88 PHE 89 ASP 90 VAL 91 SER 92 VAL 93 ALA 94 ALA 95 GLU 96 LYS 97 GLN 98 ALA 99 SER 100 PRO 101 ILE 102 ILE 103 THR 104 VAL 105 ARG 106 SER 107 TYR 108
Unit 11	GLU 32 LEU 33 SER 34 GLN 35 GLU 36 ARG 37 THR 38 ALA 39 ARG 40 LEU 41 ASN 42 GLU 43 LEU 44 GLN 45 ARG 46 ALA 47 LEU 48 VAL 49 MET 50 MET 51 ASP 52 SER 53 ASP 54 PHE 55 ARG 56 GLN 57 ILE 58 ALA 59 LEU 60 ARG 61 GLN 62 THR 63 ARG 64 THR 65 PRO 70 SER 71 LYS 72 LYS 73 LEU 74 LEU 75 HIS 76 TRP 77 ALA 78 ASP 79 TYR 80 LEU 81 LEU 82 ASP 83 SER 84 ASP 85 ASN 86 LYS 87 GLY 88 ILE 89 MET 90 PHE 91 ALA 92 ARG 93 LEU 94 GLY 95 TRP 96 HIS 97 ASN 98 PRO 99 GLN 100 GLN 101 GLN 102 PHE 103 GLY 106 GLU 107 VAL 108 THR 109 LYS 110 VAL 111 GLY 112 TYR 113 ARG 114 ILE 115 LYS 116 ASP 117 GLU 118 ARG 119 LEU 120 GLU 121 ARG 122 VAL 123 TRP 124 TRP 125 ARG 126 TYR 127 PRO 128 ASP 129 THR 130 PRO 131 ALA 132 GLY 133 GLN 134 GLU 135 GLY 136 VAL 137 VAL 138 THR 139 PRO 140 LEU 141 LEU 142 SER 143 ASP 144 VAL 145 GLU 146 GLU 147 LEU 148 ASN 149 VAL 150 ARG 151 PHE 152 TYR 153 ASP 154 GLY 155 LYS 156 GLN 157 TRP 158 ILE 159 ASN 160 GLU 161 TRP 162 SER 163 ASN 164 GLU 165 LEU 166 THR 167 LEU 168 PRO 169 ALA 170 ALA 171 ILE 172 SER 173 VAL 174 GLU 175 LEU 176 THR 177 LEU 178 LYS 179 ASP 180 TYR 181 GLY 182 LYS 183 ILE 184 ALA 185 ARG 186 THR 187 TYR 188 LEU 189 THR 190
Unit 12	GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ALA 28 PHE 29 SER 30 GLY 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 GLY 50 ILE 51 ASN 52 ARG 53 ASP 54 GLY 55 SER 56 THR 57 SER 58 TYR 59 THR 60 ALA 61 PRO 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 ARG 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 LYS 97 TRP 98 LEU 99 GLY 100 GLY 101 ARG 102 ASP 103 TRP 104 TYR 105 ASP 106 ARG 107 GLY 108 GLN 109 GLY 110 THR 111 GLN 112 VAL 113

Ligands

Unit 13	CL 1
Unit 14	CL 1
Unit 15	CL 1
Unit 16	CL 1