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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF FAB F22-4 IN COMPLEX WITH A SHIGELLA FL O-AG PENTADECASACCHARIDE
Keywords O-ANTIGEN, LPS, SHIGELLA FLEXNERI, ANTIBODY COMPLEX, IMMUNE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3C6S     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FAB F22-4 LIGHT CHAIN  A 216 1673 0
2  Protein   FAB F22-4 HEAVY CHAIN  B 209 1604 0
3  Protein   FAB F22-4 LIGHT CHAIN  C 218 1690 0
4  Protein   FAB F22-4 HEAVY CHAIN  D 209 1604 0
5  Protein   FAB F22-4 LIGHT CHAIN  E 216 1673 0
6  Protein   FAB F22-4 HEAVY CHAIN  F 209 1604 0
7  Protein   FAB F22-4 LIGHT CHAIN  G 216 1673 0
8  Protein   FAB F22-4 HEAVY CHAIN  H 209 1604 0
9  Ligand    I 11 0 120
10  Ligand    J 11 0 120
11  Ligand    K 11 0 120
12  Ligand    L 11 0 120
13  Ligand   FAB F22-4 LIGHT CHAIN  A 1 0 1
14 Water     2124 0 2124
total       3871 13125 2605

Proteins
Unit 1 ASP1 ILE2 VAL3 MET4 THR5 GLN6 ALA7 ALA8 PHE9 SER10 ASN11 PRO12 VAL13 THR14 LEU15 GLY16 THR17 SER18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 LYS27 SER27A LEU27B LEU27C HIS27D SER27E ASP28 GLY29 ILE30 THR31 TYR32 LEU33 TYR34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 HIS45 LEU46 LEU47 ILE48 TYR49 HIS50 LEU51 SER52 ASN53 LEU54 ALA55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 SER64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ARG74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 ILE85 TYR86 TYR87 CYS88 ALA89 HIS90 ASN91 VAL92 GLU93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 2 GLU1 VAL2 LYS3 VAL4 GLU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 MET18 LYS19 ILE20 SER21 CYS22 VAL23 VAL24 SER25 GLY26 LEU27 THR28 PHE29 SER30 ASN31 TYR32 TRP33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLU42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 GLU50 ILE51 ARG52 LEU52A LYS52B SER52C ASP53 ASN54 TYR55 ALA56 THR57 TYR58 TYR59 ALA60 GLU61 SER62 VAL63 LYS64 GLY65 LYS66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 LYS75 SER76 ARG77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A ASN82B LEU82C ARG83 THR84 GLU85 ASP86 THR87 GLY88 ILE89 TYR90 TYR91 CYS92 PHE93 LEU94 PRO95 MET96 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER136 MET137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 PRO186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLU193 THR194 VAL195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 VAL213 PRO214 ARG215
Unit 3 ASP1 ILE2 VAL3 MET4 THR5 GLN6 ALA7 ALA8 PHE9 SER10 ASN11 PRO12 VAL13 THR14 LEU15 GLY16 THR17 SER18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 LYS27 SER27A LEU27B LEU27C HIS27D SER27E ASP28 GLY29 ILE30 THR31 TYR32 LEU33 TYR34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 HIS45 LEU46 LEU47 ILE48 TYR49 HIS50 LEU51 SER52 ASN53 LEU54 ALA55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 SER64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ARG74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 ILE85 TYR86 TYR87 CYS88 ALA89 HIS90 ASN91 VAL92 GLU93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213
Unit 4 GLU1 VAL2 LYS3 VAL4 GLU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 MET18 LYS19 ILE20 SER21 CYS22 VAL23 VAL24 SER25 GLY26 LEU27 THR28 PHE29 SER30 ASN31 TYR32 TRP33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLU42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 GLU50 ILE51 ARG52 LEU52A LYS52B SER52C ASP53 ASN54 TYR55 ALA56 THR57 TYR58 TYR59 ALA60 GLU61 SER62 VAL63 LYS64 GLY65 LYS66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 LYS75 SER76 ARG77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A ASN82B LEU82C ARG83 THR84 GLU85 ASP86 THR87 GLY88 ILE89 TYR90 TYR91 CYS92 PHE93 LEU94 PRO95 MET96 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER136 MET137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 PRO186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLU193 THR194 VAL195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 VAL213 PRO214 ARG215
Unit 5 ASP1 ILE2 VAL3 MET4 THR5 GLN6 ALA7 ALA8 PHE9 SER10 ASN11 PRO12 VAL13 THR14 LEU15 GLY16 THR17 SER18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 LYS27 SER27A LEU27B LEU27C HIS27D SER27E ASP28 GLY29 ILE30 THR31 TYR32 LEU33 TYR34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 HIS45 LEU46 LEU47 ILE48 TYR49 HIS50 LEU51 SER52 ASN53 LEU54 ALA55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 SER64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ARG74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 ILE85 TYR86 TYR87 CYS88 ALA89 HIS90 ASN91 VAL92 GLU93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 6 GLU1 VAL2 LYS3 VAL4 GLU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 MET18 LYS19 ILE20 SER21 CYS22 VAL23 VAL24 SER25 GLY26 LEU27 THR28 PHE29 SER30 ASN31 TYR32 TRP33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLU42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 GLU50 ILE51 ARG52 LEU52A LYS52B SER52C ASP53 ASN54 TYR55 ALA56 THR57 TYR58 TYR59 ALA60 GLU61 SER62 VAL63 LYS64 GLY65 LYS66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 LYS75 SER76 ARG77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A ASN82B LEU82C ARG83 THR84 GLU85 ASP86 THR87 GLY88 ILE89 TYR90 TYR91 CYS92 PHE93 LEU94 PRO95 MET96 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER136 MET137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 PRO186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLU193 THR194 VAL195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 VAL213 PRO214 ARG215
Unit 7 ASP1 ILE2 VAL3 MET4 THR5 GLN6 ALA7 ALA8 PHE9 SER10 ASN11 PRO12 VAL13 THR14 LEU15 GLY16 THR17 SER18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 LYS27 SER27A LEU27B LEU27C HIS27D SER27E ASP28 GLY29 ILE30 THR31 TYR32 LEU33 TYR34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 HIS45 LEU46 LEU47 ILE48 TYR49 HIS50 LEU51 SER52 ASN53 LEU54 ALA55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 SER64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ARG74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 ILE85 TYR86 TYR87 CYS88 ALA89 HIS90 ASN91 VAL92 GLU93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 8 GLU1 VAL2 LYS3 VAL4 GLU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 MET18 LYS19 ILE20 SER21 CYS22 VAL23 VAL24 SER25 GLY26 LEU27 THR28 PHE29 SER30 ASN31 TYR32 TRP33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLU42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 GLU50 ILE51 ARG52 LEU52A LYS52B SER52C ASP53 ASN54 TYR55 ALA56 THR57 TYR58 TYR59 ALA60 GLU61 SER62 VAL63 LYS64 GLY65 LYS66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 LYS75 SER76 ARG77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A ASN82B LEU82C ARG83 THR84 GLU85 ASP86 THR87 GLY88 ILE89 TYR90 TYR91 CYS92 PHE93 LEU94 PRO95 MET96 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER136 MET137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 PRO186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLU193 THR194 VAL195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 VAL213 PRO214 ARG215

Ligands
Unit 9 RAM1 NAG2 RAM3 RAM4 RAM5 NAG6 RAM7 RAM8 RAM9 GLC10 GLC11
Unit 10 RAM1 NAG2 RAM3 RAM4 RAM5 NAG6 RAM7 RAM8 RAM9 GLC10 GLC11
Unit 11 RAM1 NAG2 RAM3 RAM4 RAM5 NAG6 RAM7 RAM8 RAM9 GLC10 GLC11
Unit 12 RAM1 NAG2 RAM3 RAM4 RAM5 NAG6 RAM7 RAM8 RAM9 GLC10 GLC11
Unit 13 PD215

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany